RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ERCC6L2Q5T890 1561 aa25.54■■□□□ 1.68
LIG1-219ENST00000600055 JPH4Q96JJ6 628 aa25.54■■□□□ 1.68
LIG1-219ENST00000600055 SHROOM2Q13796 1616 aa25.53■■□□□ 1.68
LIG1-219ENST00000600055 KIAA0586Q9BVV6 1533 aa25.52■■□□□ 1.68
LIG1-219ENST00000600055 FAM9AQ8IZU1 332 aaPredicted RBP25.49■■□□□ 1.67
LIG1-219ENST00000600055 CSRNP3Q8WYN3 585 aa25.49■■□□□ 1.67
LIG1-219ENST00000600055 PRG4Q92954 1404 aaPredicted RBP25.48■■□□□ 1.67
LIG1-219ENST00000600055 PRXQ9BXM0 1461 aa25.47■■□□□ 1.67
LIG1-219ENST00000600055 EEA1Q15075 1411 aa25.44■■□□□ 1.66
LIG1-219ENST00000600055 IQGAP2Q13576 1575 aa25.36■■□□□ 1.65
LIG1-219ENST00000600055 CTTNBP2Q8WZ74 1663 aa25.24■■□□□ 1.63
LIG1-219ENST00000600055 UGGT2Q9NYU1 1516 aa25.23■■□□□ 1.63
LIG1-219ENST00000600055 CARMIL2Q6F5E8 1435 aa25.23■■□□□ 1.63
LIG1-219ENST00000600055 DISP1Q96F81 1524 aa25.22■■□□□ 1.63
LIG1-219ENST00000600055 TTBK1Q5TCY1 1321 aaPredicted RBP25.22■■□□□ 1.63
LIG1-219ENST00000600055 EHMT2Q96KQ7 1210 aa25.2■■□□□ 1.62
LIG1-219ENST00000600055 KIF21BO75037 1637 aa25.18■■□□□ 1.62
LIG1-219ENST00000600055 TNIKQ9UKE5 1360 aa25.18■■□□□ 1.62
LIG1-219ENST00000600055 PTPRGP23470 1445 aa25.17■■□□□ 1.62
LIG1-219ENST00000600055 KIAA0556O60303 1618 aa25.13■■□□□ 1.61
LIG1-219ENST00000600055 GOLGA3Q08378 1498 aa25.08■■□□□ 1.6
LIG1-219ENST00000600055 TRHP20396 242 aaPredicted RBP25.07■■□□□ 1.6
LIG1-219ENST00000600055 RANGAP1P46060 587 aaPredicted RBP25.07■■□□□ 1.6
LIG1-219ENST00000600055 ADCY10Q96PN6 1610 aa25.06■■□□□ 1.6
LIG1-219ENST00000600055 UBTFP17480 764 aaKnown RBP25.05■■□□□ 1.6
LIG1-219ENST00000600055 P3H3Q8IVL6 736 aa25.05■■□□□ 1.6
LIG1-219ENST00000600055 NPM1P06748 294 aaKnown RBP eCLIP25■■□□□ 1.59
LIG1-219ENST00000600055 UACAQ9BZF9 1416 aa25■■□□□ 1.59
LIG1-219ENST00000600055 SAMD9Q5K651 1589 aa24.96■■□□□ 1.59
LIG1-219ENST00000600055 UHRF1BP1LA0JNW5 1464 aa24.95■■□□□ 1.58
LIG1-219ENST00000600055 PLB1Q6P1J6 1458 aa24.93■■□□□ 1.58
LIG1-219ENST00000600055 ABCC2Q92887 1545 aa24.92■■□□□ 1.58
LIG1-219ENST00000600055 FHOD3Q2V2M9 1422 aa24.88■■□□□ 1.57
LIG1-219ENST00000600055 MAPKBP1O60336 1514 aa24.87■■□□□ 1.57
LIG1-219ENST00000600055 ABCA8O94911 1581 aa24.87■■□□□ 1.57
LIG1-219ENST00000600055 EFCAB5A4FU69 1503 aa24.83■■□□□ 1.57
LIG1-219ENST00000600055 KDM5BQ9UGL1 1544 aa24.83■■□□□ 1.57
LIG1-219ENST00000600055 ASXL2Q76L83 1435 aa24.79■■□□□ 1.56
LIG1-219ENST00000600055 ABCC10Q5T3U5 1492 aa24.78■■□□□ 1.56
LIG1-219ENST00000600055 ARHGAP35Q9NRY4 1499 aa24.78■■□□□ 1.56
LIG1-219ENST00000600055 ARID3CA6NKF2 412 aa24.78■■□□□ 1.56
LIG1-219ENST00000600055 FAM69CQ0P6D2 419 aa24.78■■□□□ 1.56
LIG1-219ENST00000600055 ZCCHC11Q5TAX3 1644 aaKnown RBP24.78■■□□□ 1.56
LIG1-219ENST00000600055 KIF13AQ9H1H9 1805 aa24.73■■□□□ 1.55
LIG1-219ENST00000600055 DIP2BQ9P265 1576 aa24.73■■□□□ 1.55
LIG1-219ENST00000600055 RAPGEF6Q8TEU7 1601 aa24.72■■□□□ 1.55
LIG1-219ENST00000600055 ATP10BO94823 1461 aa24.7■■□□□ 1.54
LIG1-219ENST00000600055 LOC105371045A0A1W2PR82 267 aa24.69■■□□□ 1.54
LIG1-219ENST00000600055 NUP153P49790 1475 aaKnown RBP24.67■■□□□ 1.54
LIG1-219ENST00000600055 WDR7Q9Y4E6 1490 aa24.64■■□□□ 1.54
LIG1-219ENST00000600055 CLIP1P30622 1438 aa24.63■■□□□ 1.53
LIG1-219ENST00000600055 EPRSP07814 1512 aaKnown RBP24.63■■□□□ 1.53
LIG1-219ENST00000600055 FMN1Q68DA7 1419 aa24.62■■□□□ 1.53
LIG1-219ENST00000600055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.62■■□□□ 1.53
LIG1-219ENST00000600055 HNRNPUL2Q1KMD3 747 aaKnown RBP24.62■■□□□ 1.53
LIG1-219ENST00000600055 KCNH8Q96L42 1107 aa24.6■■□□□ 1.53
LIG1-219ENST00000600055 ATP1B4Q9UN42 357 aaPredicted RBP24.59■■□□□ 1.53
LIG1-219ENST00000600055 GLI2P10070 1586 aa24.59■■□□□ 1.53
LIG1-219ENST00000600055 CEP162Q5TB80 1403 aa24.53■■□□□ 1.52
LIG1-219ENST00000600055 TSPOAP1O95153 1857 aa24.51■■□□□ 1.51
LIG1-219ENST00000600055 CDK13Q14004 1512 aaKnown RBP24.51■■□□□ 1.51
LIG1-219ENST00000600055 HECW1Q76N89 1606 aa24.5■■□□□ 1.51
LIG1-219ENST00000600055 MAP3K4Q9Y6R4 1608 aa24.47■■□□□ 1.51
LIG1-219ENST00000600055 PLEKHD1A6NEE1 506 aa24.47■■□□□ 1.51
LIG1-219ENST00000600055 CASKIN1Q8WXD9 1431 aa24.46■■□□□ 1.51
LIG1-219ENST00000600055 PCF11O94913 1555 aaKnown RBP24.46■■□□□ 1.51
LIG1-219ENST00000600055 PPRC1Q5VV67 1664 aaKnown RBP24.45■■□□□ 1.5
LIG1-219ENST00000600055 CD109Q6YHK3 1445 aa24.44■■□□□ 1.5
LIG1-219ENST00000600055 LRRIQ1Q96JM4 1722 aa24.38■■□□□ 1.49
LIG1-219ENST00000600055 CFAP43Q8NDM7 1665 aa24.38■■□□□ 1.49
LIG1-219ENST00000600055 FYCO1Q9BQS8 1478 aa24.38■■□□□ 1.49
LIG1-219ENST00000600055 ABCA9Q8IUA7 1624 aa24.35■■□□□ 1.49
LIG1-219ENST00000600055 TEX14Q8IWB6 1497 aa24.35■■□□□ 1.49
LIG1-219ENST00000600055 CDK11AQ9UQ88 783 aaPredicted RBP24.35■■□□□ 1.49
LIG1-219ENST00000600055 MAGI3Q5TCQ9 1506 aa24.35■■□□□ 1.49
LIG1-219ENST00000600055 CCDC18Q5T9S5 1454 aa24.32■■□□□ 1.48
LIG1-219ENST00000600055 KDM6BO15054 1643 aa24.32■■□□□ 1.48
LIG1-219ENST00000600055 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.3■■□□□ 1.48
LIG1-219ENST00000600055 COL17A1Q9UMD9 1497 aaPredicted RBP24.3■■□□□ 1.48
LIG1-219ENST00000600055 TROQ12816 1431 aaPredicted RBP24.29■■□□□ 1.48
LIG1-219ENST00000600055 TTC37Q6PGP7 1564 aa24.26■■□□□ 1.47
LIG1-219ENST00000600055 KIF14Q15058 1648 aa24.24■■□□□ 1.47
LIG1-219ENST00000600055 VPS8Q8N3P4 1428 aa24.22■■□□□ 1.47
LIG1-219ENST00000600055 NEO1Q92859 1461 aa24.16■■□□□ 1.46
LIG1-219ENST00000600055 PLCH2O75038 1416 aa24.16■■□□□ 1.46
LIG1-219ENST00000600055 FANCAO15360 1455 aa24.14■■□□□ 1.46
LIG1-219ENST00000600055 ARAP3Q8WWN8 1544 aa24.14■■□□□ 1.45
LIG1-219ENST00000600055 PHLDB1Q86UU1 1377 aa24.14■■□□□ 1.45
LIG1-219ENST00000600055 AKNAQ7Z591 1439 aa24.12■■□□□ 1.45
LIG1-219ENST00000600055 MTUS2Q5JR59 1369 aa24.12■■□□□ 1.45
LIG1-219ENST00000600055 RAPGEF3O95398 923 aa24.1■■□□□ 1.45
LIG1-219ENST00000600055 MYO5CQ9NQX4 1742 aa24.07■■□□□ 1.44
LIG1-219ENST00000600055 EFCAB2Q5VUJ9 269 aa24.07■■□□□ 1.44
LIG1-219ENST00000600055 TIAM1Q13009 1591 aa24.05■■□□□ 1.44
LIG1-219ENST00000600055 CFAP74Q9C0B2 1584 aa24.05■■□□□ 1.44
LIG1-219ENST00000600055 ARHGAP5Q13017 1502 aa24.05■■□□□ 1.44
LIG1-219ENST00000600055 EHBP1L1Q8N3D4 1523 aa24.04■■□□□ 1.44
LIG1-219ENST00000600055 DENND4BO75064 1496 aaPredicted RBP24.02■■□□□ 1.44
LIG1-219ENST00000600055 ADGRL1O94910 1474 aa24.01■■□□□ 1.43
LIG1-219ENST00000600055 FRMPD1Q5SYB0 1578 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms