RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ERCC6L2Q5T890 1561 aa32.95■■■□□ 2.86
SHKBP1-221ENST00000599833 RAPGEF2Q9Y4G8 1499 aa32.94■■■□□ 2.86
SHKBP1-221ENST00000599833 KIAA0586Q9BVV6 1533 aa32.91■■■□□ 2.86
SHKBP1-221ENST00000599833 EEA1Q15075 1411 aa32.87■■■□□ 2.85
SHKBP1-221ENST00000599833 CSRNP3Q8WYN3 585 aa32.8■■■□□ 2.84
SHKBP1-221ENST00000599833 JPH4Q96JJ6 628 aa32.79■■■□□ 2.84
SHKBP1-221ENST00000599833 PRG4Q92954 1404 aaPredicted RBP32.76■■■□□ 2.83
SHKBP1-221ENST00000599833 IQGAP2Q13576 1575 aa32.74■■■□□ 2.83
SHKBP1-221ENST00000599833 CYB5RLQ6IPT4 315 aa32.72■■■□□ 2.83
SHKBP1-221ENST00000599833 CTTNBP2Q8WZ74 1663 aa32.7■■■□□ 2.83
SHKBP1-221ENST00000599833 FAM9AQ8IZU1 332 aaPredicted RBP32.64■■■□□ 2.82
SHKBP1-221ENST00000599833 KIF21BO75037 1637 aa32.63■■■□□ 2.81
SHKBP1-221ENST00000599833 UGGT2Q9NYU1 1516 aa32.62■■■□□ 2.81
SHKBP1-221ENST00000599833 DISP1Q96F81 1524 aa32.58■■■□□ 2.81
SHKBP1-221ENST00000599833 KIAA0556O60303 1618 aa32.48■■■□□ 2.79
SHKBP1-221ENST00000599833 CARMIL2Q6F5E8 1435 aa32.43■■■□□ 2.78
SHKBP1-221ENST00000599833 TNIKQ9UKE5 1360 aa32.39■■■□□ 2.78
SHKBP1-221ENST00000599833 ADCY10Q96PN6 1610 aa32.37■■■□□ 2.77
SHKBP1-221ENST00000599833 GOLGA3Q08378 1498 aa32.35■■■□□ 2.77
SHKBP1-221ENST00000599833 SAMD9Q5K651 1589 aa32.34■■■□□ 2.77
SHKBP1-221ENST00000599833 PTPRGP23470 1445 aa32.34■■■□□ 2.77
SHKBP1-221ENST00000599833 UHRF1BP1LA0JNW5 1464 aa32.21■■■□□ 2.75
SHKBP1-221ENST00000599833 EHMT2Q96KQ7 1210 aa32.17■■■□□ 2.74
SHKBP1-221ENST00000599833 UACAQ9BZF9 1416 aa32.17■■■□□ 2.74
SHKBP1-221ENST00000599833 ABCC2Q92887 1545 aa32.16■■■□□ 2.74
SHKBP1-221ENST00000599833 TTBK1Q5TCY1 1321 aaPredicted RBP32.14■■■□□ 2.74
SHKBP1-221ENST00000599833 ABCA8O94911 1581 aa32.14■■■□□ 2.74
SHKBP1-221ENST00000599833 PLB1Q6P1J6 1458 aa32.12■■■□□ 2.73
SHKBP1-221ENST00000599833 EFCAB5A4FU69 1503 aa32.11■■■□□ 2.73
SHKBP1-221ENST00000599833 UBTFP17480 764 aaKnown RBP32.11■■■□□ 2.73
SHKBP1-221ENST00000599833 MAPKBP1O60336 1514 aa32.1■■■□□ 2.73
SHKBP1-221ENST00000599833 P3H3Q8IVL6 736 aa32.08■■■□□ 2.73
SHKBP1-221ENST00000599833 KDM5BQ9UGL1 1544 aa32.05■■■□□ 2.72
SHKBP1-221ENST00000599833 FHOD3Q2V2M9 1422 aa32.05■■■□□ 2.72
SHKBP1-221ENST00000599833 ARHGAP35Q9NRY4 1499 aa32.03■■■□□ 2.72
SHKBP1-221ENST00000599833 RANGAP1P46060 587 aaPredicted RBP32■■■□□ 2.71
SHKBP1-221ENST00000599833 KIF13AQ9H1H9 1805 aa32■■■□□ 2.71
SHKBP1-221ENST00000599833 ZCCHC11Q5TAX3 1644 aaKnown RBP32■■■□□ 2.71
SHKBP1-221ENST00000599833 RAPGEF6Q8TEU7 1601 aa31.93■■■□□ 2.7
SHKBP1-221ENST00000599833 NPM1P06748 294 aaKnown RBP eCLIP31.93■■■□□ 2.7
SHKBP1-221ENST00000599833 ABCC10Q5T3U5 1492 aa31.91■■■□□ 2.7
SHKBP1-221ENST00000599833 DIP2BQ9P265 1576 aa31.91■■■□□ 2.7
SHKBP1-221ENST00000599833 TRHP20396 242 aaPredicted RBP31.91■■■□□ 2.7
SHKBP1-221ENST00000599833 ASXL2Q76L83 1435 aa31.88■■■□□ 2.69
SHKBP1-221ENST00000599833 NUP153P49790 1475 aaKnown RBP31.85■■■□□ 2.69
SHKBP1-221ENST00000599833 ATP10BO94823 1461 aa31.84■■■□□ 2.69
SHKBP1-221ENST00000599833 LOC105371045A0A1W2PR82 267 aa31.76■■■□□ 2.67
SHKBP1-221ENST00000599833 CLIP1P30622 1438 aa31.75■■■□□ 2.67
SHKBP1-221ENST00000599833 GLI2P10070 1586 aa31.75■■■□□ 2.67
SHKBP1-221ENST00000599833 FMN1Q68DA7 1419 aa31.75■■■□□ 2.67
SHKBP1-221ENST00000599833 WDR7Q9Y4E6 1490 aa31.74■■■□□ 2.67
SHKBP1-221ENST00000599833 EPRSP07814 1512 aaKnown RBP31.74■■■□□ 2.67
SHKBP1-221ENST00000599833 FAM69CQ0P6D2 419 aa31.71■■■□□ 2.67
SHKBP1-221ENST00000599833 CEP162Q5TB80 1403 aa31.67■■■□□ 2.66
SHKBP1-221ENST00000599833 LRRIQ1Q96JM4 1722 aa31.67■■■□□ 2.66
SHKBP1-221ENST00000599833 ARID3CA6NKF2 412 aa31.67■■■□□ 2.66
SHKBP1-221ENST00000599833 HECW1Q76N89 1606 aa31.64■■■□□ 2.66
SHKBP1-221ENST00000599833 PPRC1Q5VV67 1664 aaKnown RBP31.64■■■□□ 2.66
SHKBP1-221ENST00000599833 MAP3K4Q9Y6R4 1608 aa31.64■■■□□ 2.65
SHKBP1-221ENST00000599833 PCF11O94913 1555 aaKnown RBP31.63■■■□□ 2.65
SHKBP1-221ENST00000599833 CDK13Q14004 1512 aaKnown RBP31.61■■■□□ 2.65
SHKBP1-221ENST00000599833 CASKIN1Q8WXD9 1431 aa31.58■■■□□ 2.65
SHKBP1-221ENST00000599833 TSPOAP1O95153 1857 aa31.57■■■□□ 2.64
SHKBP1-221ENST00000599833 FYCO1Q9BQS8 1478 aa31.51■■■□□ 2.63
SHKBP1-221ENST00000599833 CFAP43Q8NDM7 1665 aa31.51■■■□□ 2.63
SHKBP1-221ENST00000599833 ABCA9Q8IUA7 1624 aa31.49■■■□□ 2.63
SHKBP1-221ENST00000599833 KCNH8Q96L42 1107 aa31.45■■■□□ 2.63
SHKBP1-221ENST00000599833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.42■■■□□ 2.62
SHKBP1-221ENST00000599833 HNRNPUL2Q1KMD3 747 aaKnown RBP31.42■■■□□ 2.62
SHKBP1-221ENST00000599833 MAGI3Q5TCQ9 1506 aa31.41■■■□□ 2.62
SHKBP1-221ENST00000599833 CCDC18Q5T9S5 1454 aa31.4■■■□□ 2.62
SHKBP1-221ENST00000599833 CD109Q6YHK3 1445 aa31.39■■■□□ 2.62
SHKBP1-221ENST00000599833 PLEKHD1A6NEE1 506 aa31.38■■■□□ 2.61
SHKBP1-221ENST00000599833 ATP1B4Q9UN42 357 aaPredicted RBP31.38■■■□□ 2.61
SHKBP1-221ENST00000599833 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.37■■■□□ 2.61
SHKBP1-221ENST00000599833 TTC37Q6PGP7 1564 aa31.34■■■□□ 2.61
SHKBP1-221ENST00000599833 KIF14Q15058 1648 aa31.32■■■□□ 2.6
SHKBP1-221ENST00000599833 TROQ12816 1431 aaPredicted RBP31.32■■■□□ 2.6
SHKBP1-221ENST00000599833 TEX14Q8IWB6 1497 aa31.31■■■□□ 2.6
SHKBP1-221ENST00000599833 COL17A1Q9UMD9 1497 aaPredicted RBP31.29■■■□□ 2.6
SHKBP1-221ENST00000599833 KDM6BO15054 1643 aa31.29■■■□□ 2.6
SHKBP1-221ENST00000599833 VPS8Q8N3P4 1428 aa31.29■■■□□ 2.6
SHKBP1-221ENST00000599833 CDK11AQ9UQ88 783 aaPredicted RBP31.22■■■□□ 2.59
SHKBP1-221ENST00000599833 NEO1Q92859 1461 aa31.14■■■□□ 2.58
SHKBP1-221ENST00000599833 MYO5CQ9NQX4 1742 aa31.14■■■□□ 2.58
SHKBP1-221ENST00000599833 PLCH2O75038 1416 aa31.14■■■□□ 2.58
SHKBP1-221ENST00000599833 ARAP3Q8WWN8 1544 aa31.14■■■□□ 2.57
SHKBP1-221ENST00000599833 TIAM1Q13009 1591 aa31.13■■■□□ 2.57
SHKBP1-221ENST00000599833 FANCAO15360 1455 aa31.08■■■□□ 2.57
SHKBP1-221ENST00000599833 CDC42BPBQ9Y5S2 1711 aa31.08■■■□□ 2.57
SHKBP1-221ENST00000599833 EHBP1L1Q8N3D4 1523 aa31.07■■■□□ 2.56
SHKBP1-221ENST00000599833 CDC42BPAQ5VT25 1732 aa31.07■■■□□ 2.56
SHKBP1-221ENST00000599833 PHLDB1Q86UU1 1377 aa31.06■■■□□ 2.56
SHKBP1-221ENST00000599833 CFAP74Q9C0B2 1584 aa31.06■■■□□ 2.56
SHKBP1-221ENST00000599833 MAP3K1Q13233 1512 aa31.06■■■□□ 2.56
SHKBP1-221ENST00000599833 PREX2Q70Z35 1606 aa31.06■■■□□ 2.56
SHKBP1-221ENST00000599833 FRMPD1Q5SYB0 1578 aa31.05■■■□□ 2.56
SHKBP1-221ENST00000599833 AKNAQ7Z591 1439 aa31.02■■■□□ 2.56
SHKBP1-221ENST00000599833 MTUS2Q5JR59 1369 aa31■■■□□ 2.55
SHKBP1-221ENST00000599833 RICTORQ6R327 1708 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms