RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PRXQ9BXM0 1461 aa23.81■■□□□ 1.4
SHKBP1-217ENST00000598558 JPH4Q96JJ6 628 aa23.78■■□□□ 1.4
SHKBP1-217ENST00000598558 KIAA0586Q9BVV6 1533 aa23.75■■□□□ 1.39
SHKBP1-217ENST00000598558 ERCC6L2Q5T890 1561 aa23.75■■□□□ 1.39
SHKBP1-217ENST00000598558 EEA1Q15075 1411 aa23.75■■□□□ 1.39
SHKBP1-217ENST00000598558 CYB5RLQ6IPT4 315 aa23.74■■□□□ 1.39
SHKBP1-217ENST00000598558 ARAP1Q96P48 1450 aa23.74■■□□□ 1.39
SHKBP1-217ENST00000598558 SHROOM2Q13796 1616 aa23.7■■□□□ 1.39
SHKBP1-217ENST00000598558 PRG4Q92954 1404 aaPredicted RBP23.69■■□□□ 1.38
SHKBP1-217ENST00000598558 IQGAP2Q13576 1575 aa23.57■■□□□ 1.36
SHKBP1-217ENST00000598558 EHMT2Q96KQ7 1210 aa23.57■■□□□ 1.36
SHKBP1-217ENST00000598558 DISP1Q96F81 1524 aa23.5■■□□□ 1.35
SHKBP1-217ENST00000598558 UGGT2Q9NYU1 1516 aa23.5■■□□□ 1.35
SHKBP1-217ENST00000598558 KIF21BO75037 1637 aa23.49■■□□□ 1.35
SHKBP1-217ENST00000598558 TTBK1Q5TCY1 1321 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-217ENST00000598558 CARMIL2Q6F5E8 1435 aa23.44■■□□□ 1.34
SHKBP1-217ENST00000598558 CTTNBP2Q8WZ74 1663 aa23.44■■□□□ 1.34
SHKBP1-217ENST00000598558 TNIKQ9UKE5 1360 aa23.42■■□□□ 1.34
SHKBP1-217ENST00000598558 PTPRGP23470 1445 aa23.42■■□□□ 1.34
SHKBP1-217ENST00000598558 UBTFP17480 764 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-217ENST00000598558 GOLGA3Q08378 1498 aa23.39■■□□□ 1.34
SHKBP1-217ENST00000598558 RANGAP1P46060 587 aaPredicted RBP23.39■■□□□ 1.33
SHKBP1-217ENST00000598558 P3H3Q8IVL6 736 aa23.38■■□□□ 1.33
SHKBP1-217ENST00000598558 KIAA0556O60303 1618 aa23.37■■□□□ 1.33
SHKBP1-217ENST00000598558 ADCY10Q96PN6 1610 aa23.26■■□□□ 1.31
SHKBP1-217ENST00000598558 SAMD9Q5K651 1589 aa23.25■■□□□ 1.31
SHKBP1-217ENST00000598558 UACAQ9BZF9 1416 aa23.25■■□□□ 1.31
SHKBP1-217ENST00000598558 LOC105371045A0A1W2PR82 267 aa23.23■■□□□ 1.31
SHKBP1-217ENST00000598558 PLB1Q6P1J6 1458 aa23.22■■□□□ 1.31
SHKBP1-217ENST00000598558 FHOD3Q2V2M9 1422 aa23.21■■□□□ 1.31
SHKBP1-217ENST00000598558 UHRF1BP1LA0JNW5 1464 aa23.19■■□□□ 1.3
SHKBP1-217ENST00000598558 NPM1P06748 294 aaKnown RBP eCLIP23.17■■□□□ 1.3
SHKBP1-217ENST00000598558 TRHP20396 242 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-217ENST00000598558 ABCC2Q92887 1545 aa23.16■■□□□ 1.3
SHKBP1-217ENST00000598558 ARHGAP35Q9NRY4 1499 aa23.16■■□□□ 1.3
SHKBP1-217ENST00000598558 ABCA8O94911 1581 aa23.14■■□□□ 1.3
SHKBP1-217ENST00000598558 EFCAB5A4FU69 1503 aa23.12■■□□□ 1.29
SHKBP1-217ENST00000598558 KDM5BQ9UGL1 1544 aa23.1■■□□□ 1.29
SHKBP1-217ENST00000598558 ARID3CA6NKF2 412 aa23.08■■□□□ 1.29
SHKBP1-217ENST00000598558 MAPKBP1O60336 1514 aa23.06■■□□□ 1.28
SHKBP1-217ENST00000598558 ASXL2Q76L83 1435 aa23.03■■□□□ 1.28
SHKBP1-217ENST00000598558 CLIP1P30622 1438 aa23.02■■□□□ 1.28
SHKBP1-217ENST00000598558 ATP10BO94823 1461 aa23.02■■□□□ 1.28
SHKBP1-217ENST00000598558 FAM69CQ0P6D2 419 aa23■■□□□ 1.27
SHKBP1-217ENST00000598558 ZCCHC11Q5TAX3 1644 aaKnown RBP23■■□□□ 1.27
SHKBP1-217ENST00000598558 NUP153P49790 1475 aaKnown RBP22.99■■□□□ 1.27
SHKBP1-217ENST00000598558 ABCC10Q5T3U5 1492 aa22.99■■□□□ 1.27
SHKBP1-217ENST00000598558 RAPGEF6Q8TEU7 1601 aa22.98■■□□□ 1.27
SHKBP1-217ENST00000598558 CEP162Q5TB80 1403 aa22.95■■□□□ 1.26
SHKBP1-217ENST00000598558 FMN1Q68DA7 1419 aa22.94■■□□□ 1.26
SHKBP1-217ENST00000598558 DIP2BQ9P265 1576 aa22.92■■□□□ 1.26
SHKBP1-217ENST00000598558 ATP1B4Q9UN42 357 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-217ENST00000598558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.89■■□□□ 1.25
SHKBP1-217ENST00000598558 HNRNPUL2Q1KMD3 747 aaKnown RBP22.89■■□□□ 1.25
SHKBP1-217ENST00000598558 KCNH8Q96L42 1107 aa22.89■■□□□ 1.25
SHKBP1-217ENST00000598558 EPRSP07814 1512 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-217ENST00000598558 WDR7Q9Y4E6 1490 aa22.88■■□□□ 1.25
SHKBP1-217ENST00000598558 KIF13AQ9H1H9 1805 aa22.88■■□□□ 1.25
SHKBP1-217ENST00000598558 CDK13Q14004 1512 aaKnown RBP22.85■■□□□ 1.25
SHKBP1-217ENST00000598558 CASKIN1Q8WXD9 1431 aa22.83■■□□□ 1.25
SHKBP1-217ENST00000598558 GLI2P10070 1586 aa22.81■■□□□ 1.24
SHKBP1-217ENST00000598558 PCF11O94913 1555 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-217ENST00000598558 PLEKHD1A6NEE1 506 aa22.79■■□□□ 1.24
SHKBP1-217ENST00000598558 HECW1Q76N89 1606 aa22.77■■□□□ 1.24
SHKBP1-217ENST00000598558 LRRIQ1Q96JM4 1722 aa22.73■■□□□ 1.23
SHKBP1-217ENST00000598558 FYCO1Q9BQS8 1478 aa22.73■■□□□ 1.23
SHKBP1-217ENST00000598558 CD109Q6YHK3 1445 aa22.7■■□□□ 1.22
SHKBP1-217ENST00000598558 MAP3K4Q9Y6R4 1608 aa22.69■■□□□ 1.22
SHKBP1-217ENST00000598558 PPRC1Q5VV67 1664 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-217ENST00000598558 CDK11AQ9UQ88 783 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-217ENST00000598558 TSPOAP1O95153 1857 aa22.66■■□□□ 1.22
SHKBP1-217ENST00000598558 MAGI3Q5TCQ9 1506 aa22.66■■□□□ 1.22
SHKBP1-217ENST00000598558 VPS8Q8N3P4 1428 aa22.65■■□□□ 1.22
SHKBP1-217ENST00000598558 CCDC18Q5T9S5 1454 aa22.64■■□□□ 1.21
SHKBP1-217ENST00000598558 TROQ12816 1431 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-217ENST00000598558 ABCA9Q8IUA7 1624 aa22.62■■□□□ 1.21
SHKBP1-217ENST00000598558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.62■■□□□ 1.21
SHKBP1-217ENST00000598558 COL17A1Q9UMD9 1497 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-217ENST00000598558 CFAP43Q8NDM7 1665 aa22.59■■□□□ 1.21
SHKBP1-217ENST00000598558 KIF14Q15058 1648 aa22.57■■□□□ 1.2
SHKBP1-217ENST00000598558 TTC37Q6PGP7 1564 aa22.56■■□□□ 1.2
SHKBP1-217ENST00000598558 TEX14Q8IWB6 1497 aa22.55■■□□□ 1.2
SHKBP1-217ENST00000598558 PLCH2O75038 1416 aa22.5■■□□□ 1.19
SHKBP1-217ENST00000598558 KANK4Q5T7N3 995 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-217ENST00000598558 KDM6BO15054 1643 aa22.49■■□□□ 1.19
SHKBP1-217ENST00000598558 MTUS2Q5JR59 1369 aa22.49■■□□□ 1.19
SHKBP1-217ENST00000598558 TIAM1Q13009 1591 aa22.46■■□□□ 1.19
SHKBP1-217ENST00000598558 NEO1Q92859 1461 aa22.44■■□□□ 1.18
SHKBP1-217ENST00000598558 FANCAO15360 1455 aa22.43■■□□□ 1.18
SHKBP1-217ENST00000598558 AKNAQ7Z591 1439 aa22.43■■□□□ 1.18
SHKBP1-217ENST00000598558 RAPGEF3O95398 923 aa22.43■■□□□ 1.18
SHKBP1-217ENST00000598558 ARAP3Q8WWN8 1544 aa22.42■■□□□ 1.18
SHKBP1-217ENST00000598558 PHLDB1Q86UU1 1377 aa22.41■■□□□ 1.18
SHKBP1-217ENST00000598558 EFCAB2Q5VUJ9 269 aa22.41■■□□□ 1.18
SHKBP1-217ENST00000598558 LRRC9Q6ZRR7 1453 aa22.41■■□□□ 1.18
SHKBP1-217ENST00000598558 MAP3K1Q13233 1512 aa22.4■■□□□ 1.18
SHKBP1-217ENST00000598558 GPATCH8Q9UKJ3 1502 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-217ENST00000598558 EHBP1L1Q8N3D4 1523 aa22.39■■□□□ 1.17
SHKBP1-217ENST00000598558 ARHGAP5Q13017 1502 aa22.35■■□□□ 1.17
SHKBP1-217ENST00000598558 CCNB3Q8WWL7 1395 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms