RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 TRHP20396 242 aaPredicted RBP18.57■□□□□ 0.56
VRK3-214ENST00000598553 JPH4Q96JJ6 628 aa18.53■□□□□ 0.56
VRK3-214ENST00000598553 CARMIL1Q5VZK9 1371 aa18.51■□□□□ 0.55
VRK3-214ENST00000598553 KIAA0586Q9BVV6 1533 aa18.5■□□□□ 0.55
VRK3-214ENST00000598553 KIF13AQ9H1H9 1805 aa18.47■□□□□ 0.55
VRK3-214ENST00000598553 ADCY10Q96PN6 1610 aa18.46■□□□□ 0.55
VRK3-214ENST00000598553 IQGAP2Q13576 1575 aa18.42■□□□□ 0.54
VRK3-214ENST00000598553 RAPGEF2Q9Y4G8 1499 aa18.37■□□□□ 0.53
VRK3-214ENST00000598553 CTTNBP2Q8WZ74 1663 aa18.37■□□□□ 0.53
VRK3-214ENST00000598553 DISP1Q96F81 1524 aa18.34■□□□□ 0.53
VRK3-214ENST00000598553 DIP2BQ9P265 1576 aa18.3■□□□□ 0.52
VRK3-214ENST00000598553 TTBK1Q5TCY1 1321 aaPredicted RBP18.3■□□□□ 0.52
VRK3-214ENST00000598553 UGGT2Q9NYU1 1516 aa18.3■□□□□ 0.52
VRK3-214ENST00000598553 KIAA0556O60303 1618 aa18.3■□□□□ 0.52
VRK3-214ENST00000598553 MAPKBP1O60336 1514 aa18.29■□□□□ 0.52
VRK3-214ENST00000598553 PRXQ9BXM0 1461 aa18.28■□□□□ 0.52
VRK3-214ENST00000598553 PTPRGP23470 1445 aa18.26■□□□□ 0.51
VRK3-214ENST00000598553 TNIKQ9UKE5 1360 aa18.25■□□□□ 0.51
VRK3-214ENST00000598553 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
VRK3-214ENST00000598553 TSPOAP1O95153 1857 aa18.24■□□□□ 0.51
VRK3-214ENST00000598553 CARMIL2Q6F5E8 1435 aa18.23■□□□□ 0.51
VRK3-214ENST00000598553 ABCC2Q92887 1545 aa18.21■□□□□ 0.51
VRK3-214ENST00000598553 ZCCHC11Q5TAX3 1644 aaKnown RBP18.17■□□□□ 0.5
VRK3-214ENST00000598553 UHRF1BP1LA0JNW5 1464 aa18.17■□□□□ 0.5
VRK3-214ENST00000598553 UACAQ9BZF9 1416 aa18.16■□□□□ 0.5
VRK3-214ENST00000598553 PPRC1Q5VV67 1664 aaKnown RBP18.16■□□□□ 0.5
VRK3-214ENST00000598553 FAM69CQ0P6D2 419 aa18.16■□□□□ 0.5
VRK3-214ENST00000598553 PLB1Q6P1J6 1458 aa18.14■□□□□ 0.49
VRK3-214ENST00000598553 NPM1P06748 294 aaKnown RBP eCLIP18.13■□□□□ 0.49
VRK3-214ENST00000598553 ASXL2Q76L83 1435 aa18.13■□□□□ 0.49
VRK3-214ENST00000598553 KDM5BQ9UGL1 1544 aa18.12■□□□□ 0.49
VRK3-214ENST00000598553 ABCA8O94911 1581 aa18.11■□□□□ 0.49
VRK3-214ENST00000598553 CSRNP3Q8WYN3 585 aa18.08■□□□□ 0.48
VRK3-214ENST00000598553 SAMD9Q5K651 1589 aa18.08■□□□□ 0.48
VRK3-214ENST00000598553 FAM9AQ8IZU1 332 aaPredicted RBP18.07■□□□□ 0.48
VRK3-214ENST00000598553 GLI2P10070 1586 aa18.05■□□□□ 0.48
VRK3-214ENST00000598553 GOLGA3Q08378 1498 aa18.05■□□□□ 0.48
VRK3-214ENST00000598553 KDM6BO15054 1643 aa18.05■□□□□ 0.48
VRK3-214ENST00000598553 MAP3K4Q9Y6R4 1608 aa18.05■□□□□ 0.48
VRK3-214ENST00000598553 EPRSP07814 1512 aaKnown RBP18.03■□□□□ 0.48
VRK3-214ENST00000598553 KIF21BO75037 1637 aa18.02■□□□□ 0.48
VRK3-214ENST00000598553 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
VRK3-214ENST00000598553 EEA1Q15075 1411 aa18.01■□□□□ 0.47
VRK3-214ENST00000598553 CHIC1Q5VXU3 224 aa18.01■□□□□ 0.47
VRK3-214ENST00000598553 WDR7Q9Y4E6 1490 aa17.97■□□□□ 0.47
VRK3-214ENST00000598553 ARID3CA6NKF2 412 aa17.95■□□□□ 0.46
VRK3-214ENST00000598553 COL17A1Q9UMD9 1497 aaPredicted RBP17.95■□□□□ 0.46
VRK3-214ENST00000598553 RAPGEF6Q8TEU7 1601 aa17.94■□□□□ 0.46
VRK3-214ENST00000598553 RANGAP1P46060 587 aaPredicted RBP17.94■□□□□ 0.46
VRK3-214ENST00000598553 FHOD3Q2V2M9 1422 aa17.93■□□□□ 0.46
VRK3-214ENST00000598553 EHMT2Q96KQ7 1210 aa17.93■□□□□ 0.46
VRK3-214ENST00000598553 ATP10BO94823 1461 aa17.91■□□□□ 0.46
VRK3-214ENST00000598553 CFAP43Q8NDM7 1665 aa17.9■□□□□ 0.46
VRK3-214ENST00000598553 NUP153P49790 1475 aaKnown RBP17.88■□□□□ 0.45
VRK3-214ENST00000598553 KCNH8Q96L42 1107 aa17.84■□□□□ 0.45
VRK3-214ENST00000598553 EFCAB5A4FU69 1503 aa17.82■□□□□ 0.44
VRK3-214ENST00000598553 ABCA9Q8IUA7 1624 aa17.81■□□□□ 0.44
VRK3-214ENST00000598553 MAGI3Q5TCQ9 1506 aa17.8■□□□□ 0.44
VRK3-214ENST00000598553 TEX14Q8IWB6 1497 aa17.8■□□□□ 0.44
VRK3-214ENST00000598553 CD109Q6YHK3 1445 aa17.8■□□□□ 0.44
VRK3-214ENST00000598553 LRRIQ1Q96JM4 1722 aa17.78■□□□□ 0.44
VRK3-214ENST00000598553 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
VRK3-214ENST00000598553 AEBP2Q6ZN18 517 aaPredicted RBP17.78■□□□□ 0.44
VRK3-214ENST00000598553 KDM4FA0A1W2PPD8 638 aa17.77■□□□□ 0.44
VRK3-214ENST00000598553 CDK13Q14004 1512 aaKnown RBP17.77■□□□□ 0.43
VRK3-214ENST00000598553 UBTFP17480 764 aaKnown RBP17.73■□□□□ 0.43
VRK3-214ENST00000598553 TTC37Q6PGP7 1564 aa17.72■□□□□ 0.43
VRK3-214ENST00000598553 FRMPD1Q5SYB0 1578 aa17.7■□□□□ 0.42
VRK3-214ENST00000598553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.69■□□□□ 0.42
VRK3-214ENST00000598553 HNRNPUL2Q1KMD3 747 aaKnown RBP17.69■□□□□ 0.42
VRK3-214ENST00000598553 ADGRL1O94910 1474 aa17.69■□□□□ 0.42
VRK3-214ENST00000598553 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.68■□□□□ 0.42
VRK3-214ENST00000598553 HECW1Q76N89 1606 aa17.67■□□□□ 0.42
VRK3-214ENST00000598553 ARAP3Q8WWN8 1544 aa17.66■□□□□ 0.42
VRK3-214ENST00000598553 PCF11O94913 1555 aaKnown RBP17.65■□□□□ 0.42
VRK3-214ENST00000598553 KIF14Q15058 1648 aa17.64■□□□□ 0.41
VRK3-214ENST00000598553 RICTORQ6R327 1708 aa17.61■□□□□ 0.41
VRK3-214ENST00000598553 FMN1Q68DA7 1419 aa17.6■□□□□ 0.41
VRK3-214ENST00000598553 NEO1Q92859 1461 aa17.59■□□□□ 0.41
VRK3-214ENST00000598553 SIGLEC1Q9BZZ2 1709 aa17.58■□□□□ 0.4
VRK3-214ENST00000598553 RAPGEF3O95398 923 aa17.57■□□□□ 0.4
VRK3-214ENST00000598553 MYO5CQ9NQX4 1742 aa17.56■□□□□ 0.4
VRK3-214ENST00000598553 PLEKHD1A6NEE1 506 aa17.56■□□□□ 0.4
VRK3-214ENST00000598553 ATP1B4Q9UN42 357 aaPredicted RBP17.55■□□□□ 0.4
VRK3-214ENST00000598553 FANCAO15360 1455 aa17.54■□□□□ 0.4
VRK3-214ENST00000598553 CFAP74Q9C0B2 1584 aa17.53■□□□□ 0.4
VRK3-214ENST00000598553 AKNAQ7Z591 1439 aa17.52■□□□□ 0.4
VRK3-214ENST00000598553 CDC42BPBQ9Y5S2 1711 aa17.51■□□□□ 0.39
VRK3-214ENST00000598553 ARHGEF40Q8TER5 1519 aa17.51■□□□□ 0.39
VRK3-214ENST00000598553 ADAMTSL3P82987 1691 aa17.49■□□□□ 0.39
VRK3-214ENST00000598553 CLIP1P30622 1438 aa17.49■□□□□ 0.39
VRK3-214ENST00000598553 TROQ12816 1431 aaPredicted RBP17.49■□□□□ 0.39
VRK3-214ENST00000598553 CASKIN1Q8WXD9 1431 aa17.49■□□□□ 0.39
VRK3-214ENST00000598553 PHLDB1Q86UU1 1377 aa17.49■□□□□ 0.39
VRK3-214ENST00000598553 DENND4BO75064 1496 aaPredicted RBP17.48■□□□□ 0.39
VRK3-214ENST00000598553 PLCH2O75038 1416 aa17.47■□□□□ 0.39
VRK3-214ENST00000598553 ZMYM4Q5VZL5 1548 aa17.47■□□□□ 0.39
VRK3-214ENST00000598553 BCORL1Q5H9F3 1711 aa17.47■□□□□ 0.39
VRK3-214ENST00000598553 CDC42BPAQ5VT25 1732 aa17.46■□□□□ 0.39
VRK3-214ENST00000598553 YEATS2Q9ULM3 1422 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms