RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RAPGEF2Q9Y4G8 1499 aa27.44■■□□□ 1.98
TRIM28-213ENST00000598355 CYB5RLQ6IPT4 315 aa27.44■■□□□ 1.98
TRIM28-213ENST00000598355 PRXQ9BXM0 1461 aa27.39■■□□□ 1.98
TRIM28-213ENST00000598355 PRG4Q92954 1404 aaPredicted RBP27.39■■□□□ 1.97
TRIM28-213ENST00000598355 IQGAP2Q13576 1575 aa27.38■■□□□ 1.97
TRIM28-213ENST00000598355 JPH4Q96JJ6 628 aa27.37■■□□□ 1.97
TRIM28-213ENST00000598355 CTTNBP2Q8WZ74 1663 aa27.33■■□□□ 1.97
TRIM28-213ENST00000598355 EEA1Q15075 1411 aa27.33■■□□□ 1.96
TRIM28-213ENST00000598355 CHIC1Q5VXU3 224 aa27.25■■□□□ 1.95
TRIM28-213ENST00000598355 UGGT2Q9NYU1 1516 aa27.25■■□□□ 1.95
TRIM28-213ENST00000598355 DISP1Q96F81 1524 aa27.18■■□□□ 1.94
TRIM28-213ENST00000598355 CSRNP3Q8WYN3 585 aa27.16■■□□□ 1.94
TRIM28-213ENST00000598355 KIAA0556O60303 1618 aa27.14■■□□□ 1.94
TRIM28-213ENST00000598355 CARMIL2Q6F5E8 1435 aa27.14■■□□□ 1.93
TRIM28-213ENST00000598355 KIF21BO75037 1637 aa27.12■■□□□ 1.93
TRIM28-213ENST00000598355 ADCY10Q96PN6 1610 aa27.12■■□□□ 1.93
TRIM28-213ENST00000598355 TNIKQ9UKE5 1360 aa27.07■■□□□ 1.92
TRIM28-213ENST00000598355 PTPRGP23470 1445 aa27.02■■□□□ 1.92
TRIM28-213ENST00000598355 GOLGA3Q08378 1498 aa27■■□□□ 1.91
TRIM28-213ENST00000598355 MAPKBP1O60336 1514 aa26.98■■□□□ 1.91
TRIM28-213ENST00000598355 SAMD9Q5K651 1589 aa26.97■■□□□ 1.91
TRIM28-213ENST00000598355 UHRF1BP1LA0JNW5 1464 aa26.96■■□□□ 1.91
TRIM28-213ENST00000598355 KIF13AQ9H1H9 1805 aa26.93■■□□□ 1.9
TRIM28-213ENST00000598355 ABCC2Q92887 1545 aa26.93■■□□□ 1.9
TRIM28-213ENST00000598355 FAM9AQ8IZU1 332 aaPredicted RBP26.91■■□□□ 1.9
TRIM28-213ENST00000598355 UACAQ9BZF9 1416 aa26.89■■□□□ 1.89
TRIM28-213ENST00000598355 ABCA8O94911 1581 aa26.85■■□□□ 1.89
TRIM28-213ENST00000598355 TRHP20396 242 aaPredicted RBP26.85■■□□□ 1.89
TRIM28-213ENST00000598355 KDM5BQ9UGL1 1544 aa26.83■■□□□ 1.89
TRIM28-213ENST00000598355 DIP2BQ9P265 1576 aa26.83■■□□□ 1.89
TRIM28-213ENST00000598355 ABCC10Q5T3U5 1492 aa26.81■■□□□ 1.88
TRIM28-213ENST00000598355 ZCCHC11Q5TAX3 1644 aaKnown RBP26.79■■□□□ 1.88
TRIM28-213ENST00000598355 PLB1Q6P1J6 1458 aa26.79■■□□□ 1.88
TRIM28-213ENST00000598355 EFCAB5A4FU69 1503 aa26.79■■□□□ 1.88
TRIM28-213ENST00000598355 NPM1P06748 294 aaKnown RBP eCLIP26.75■■□□□ 1.87
TRIM28-213ENST00000598355 TTBK1Q5TCY1 1321 aaPredicted RBP26.74■■□□□ 1.87
TRIM28-213ENST00000598355 ASXL2Q76L83 1435 aa26.69■■□□□ 1.86
TRIM28-213ENST00000598355 RAPGEF6Q8TEU7 1601 aa26.67■■□□□ 1.86
TRIM28-213ENST00000598355 GLI2P10070 1586 aa26.66■■□□□ 1.86
TRIM28-213ENST00000598355 FHOD3Q2V2M9 1422 aa26.64■■□□□ 1.85
TRIM28-213ENST00000598355 P3H3Q8IVL6 736 aa26.6■■□□□ 1.85
TRIM28-213ENST00000598355 ARHGAP35Q9NRY4 1499 aa26.59■■□□□ 1.85
TRIM28-213ENST00000598355 WDR7Q9Y4E6 1490 aa26.58■■□□□ 1.85
TRIM28-213ENST00000598355 EPRSP07814 1512 aaKnown RBP26.58■■□□□ 1.85
TRIM28-213ENST00000598355 UBTFP17480 764 aaKnown RBP26.57■■□□□ 1.84
TRIM28-213ENST00000598355 FAM69CQ0P6D2 419 aa26.57■■□□□ 1.84
TRIM28-213ENST00000598355 PPRC1Q5VV67 1664 aaKnown RBP26.56■■□□□ 1.84
TRIM28-213ENST00000598355 MAP3K4Q9Y6R4 1608 aa26.55■■□□□ 1.84
TRIM28-213ENST00000598355 NUP153P49790 1475 aaKnown RBP26.55■■□□□ 1.84
TRIM28-213ENST00000598355 ATP10BO94823 1461 aa26.54■■□□□ 1.84
TRIM28-213ENST00000598355 TSPOAP1O95153 1857 aa26.53■■□□□ 1.84
TRIM28-213ENST00000598355 EHMT2Q96KQ7 1210 aa26.49■■□□□ 1.83
TRIM28-213ENST00000598355 RANGAP1P46060 587 aaPredicted RBP26.48■■□□□ 1.83
TRIM28-213ENST00000598355 CFAP43Q8NDM7 1665 aa26.46■■□□□ 1.83
TRIM28-213ENST00000598355 FMN1Q68DA7 1419 aa26.44■■□□□ 1.82
TRIM28-213ENST00000598355 HECW1Q76N89 1606 aa26.41■■□□□ 1.82
TRIM28-213ENST00000598355 ABCA9Q8IUA7 1624 aa26.38■■□□□ 1.81
TRIM28-213ENST00000598355 LRRIQ1Q96JM4 1722 aa26.36■■□□□ 1.81
TRIM28-213ENST00000598355 KDM6BO15054 1643 aa26.36■■□□□ 1.81
TRIM28-213ENST00000598355 MAGI3Q5TCQ9 1506 aa26.33■■□□□ 1.81
TRIM28-213ENST00000598355 CLIP1P30622 1438 aa26.32■■□□□ 1.8
TRIM28-213ENST00000598355 TEX14Q8IWB6 1497 aa26.32■■□□□ 1.8
TRIM28-213ENST00000598355 CDK13Q14004 1512 aaKnown RBP26.32■■□□□ 1.8
TRIM28-213ENST00000598355 PCF11O94913 1555 aaKnown RBP26.32■■□□□ 1.8
TRIM28-213ENST00000598355 ARID3CA6NKF2 412 aa26.3■■□□□ 1.8
TRIM28-213ENST00000598355 CD109Q6YHK3 1445 aa26.26■■□□□ 1.79
TRIM28-213ENST00000598355 CASKIN1Q8WXD9 1431 aa26.25■■□□□ 1.79
TRIM28-213ENST00000598355 FYCO1Q9BQS8 1478 aa26.23■■□□□ 1.79
TRIM28-213ENST00000598355 KCNH8Q96L42 1107 aa26.21■■□□□ 1.79
TRIM28-213ENST00000598355 CEP162Q5TB80 1403 aa26.21■■□□□ 1.79
TRIM28-213ENST00000598355 COL17A1Q9UMD9 1497 aaPredicted RBP26.19■■□□□ 1.78
TRIM28-213ENST00000598355 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.19■■□□□ 1.78
TRIM28-213ENST00000598355 TTC37Q6PGP7 1564 aa26.18■■□□□ 1.78
TRIM28-213ENST00000598355 CCDC18Q5T9S5 1454 aa26.17■■□□□ 1.78
TRIM28-213ENST00000598355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.16■■□□□ 1.78
TRIM28-213ENST00000598355 HNRNPUL2Q1KMD3 747 aaKnown RBP26.16■■□□□ 1.78
TRIM28-213ENST00000598355 PLEKHD1A6NEE1 506 aa26.15■■□□□ 1.78
TRIM28-213ENST00000598355 ARAP3Q8WWN8 1544 aa26.11■■□□□ 1.77
TRIM28-213ENST00000598355 NEO1Q92859 1461 aa26.11■■□□□ 1.77
TRIM28-213ENST00000598355 KIF14Q15058 1648 aa26.1■■□□□ 1.77
TRIM28-213ENST00000598355 TROQ12816 1431 aaPredicted RBP26.1■■□□□ 1.77
TRIM28-213ENST00000598355 CFAP74Q9C0B2 1584 aa26.08■■□□□ 1.77
TRIM28-213ENST00000598355 MYO5CQ9NQX4 1742 aa26.07■■□□□ 1.76
TRIM28-213ENST00000598355 PHLDB1Q86UU1 1377 aa26.07■■□□□ 1.76
TRIM28-213ENST00000598355 LOC105371045A0A1W2PR82 267 aa26.03■■□□□ 1.76
TRIM28-213ENST00000598355 CDK11AQ9UQ88 783 aaPredicted RBP26.03■■□□□ 1.76
TRIM28-213ENST00000598355 ATP1B4Q9UN42 357 aaPredicted RBP26.02■■□□□ 1.76
TRIM28-213ENST00000598355 FRMPD1Q5SYB0 1578 aa26.01■■□□□ 1.75
TRIM28-213ENST00000598355 FANCAO15360 1455 aa25.98■■□□□ 1.75
TRIM28-213ENST00000598355 PLCH2O75038 1416 aa25.97■■□□□ 1.75
TRIM28-213ENST00000598355 RICTORQ6R327 1708 aa25.97■■□□□ 1.75
TRIM28-213ENST00000598355 PREX2Q70Z35 1606 aa25.96■■□□□ 1.75
TRIM28-213ENST00000598355 CDC42BPBQ9Y5S2 1711 aa25.95■■□□□ 1.74
TRIM28-213ENST00000598355 CDC42BPAQ5VT25 1732 aa25.93■■□□□ 1.74
TRIM28-213ENST00000598355 AKNAQ7Z591 1439 aa25.92■■□□□ 1.74
TRIM28-213ENST00000598355 VPS8Q8N3P4 1428 aa25.92■■□□□ 1.74
TRIM28-213ENST00000598355 ZMYM4Q5VZL5 1548 aa25.88■■□□□ 1.73
TRIM28-213ENST00000598355 EHBP1L1Q8N3D4 1523 aa25.88■■□□□ 1.73
TRIM28-213ENST00000598355 DENND4BO75064 1496 aaPredicted RBP25.85■■□□□ 1.73
TRIM28-213ENST00000598355 TIAM1Q13009 1591 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms