RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 RAPGEF2Q9Y4G8 1499 aa23.35■■□□□ 1.33
UPF1-205ENST00000598209 KIAA0586Q9BVV6 1533 aa23.34■■□□□ 1.33
UPF1-205ENST00000598209 JPH4Q96JJ6 628 aa23.33■■□□□ 1.33
UPF1-205ENST00000598209 CHIC1Q5VXU3 224 aa23.32■■□□□ 1.32
UPF1-205ENST00000598209 PRG4Q92954 1404 aaPredicted RBP23.3■■□□□ 1.32
UPF1-205ENST00000598209 PRXQ9BXM0 1461 aa23.24■■□□□ 1.31
UPF1-205ENST00000598209 IQGAP2Q13576 1575 aa23.24■■□□□ 1.31
UPF1-205ENST00000598209 EEA1Q15075 1411 aa23.24■■□□□ 1.31
UPF1-205ENST00000598209 CSRNP3Q8WYN3 585 aa23.21■■□□□ 1.31
UPF1-205ENST00000598209 CTTNBP2Q8WZ74 1663 aa23.2■■□□□ 1.3
UPF1-205ENST00000598209 FAM9AQ8IZU1 332 aaPredicted RBP23.14■■□□□ 1.29
UPF1-205ENST00000598209 CARMIL2Q6F5E8 1435 aa23.1■■□□□ 1.29
UPF1-205ENST00000598209 UGGT2Q9NYU1 1516 aa23.09■■□□□ 1.29
UPF1-205ENST00000598209 DISP1Q96F81 1524 aa23.06■■□□□ 1.28
UPF1-205ENST00000598209 KIF21BO75037 1637 aa23.04■■□□□ 1.28
UPF1-205ENST00000598209 TNIKQ9UKE5 1360 aa23.02■■□□□ 1.28
UPF1-205ENST00000598209 KIAA0556O60303 1618 aa23.02■■□□□ 1.28
UPF1-205ENST00000598209 PTPRGP23470 1445 aa23.01■■□□□ 1.27
UPF1-205ENST00000598209 ADCY10Q96PN6 1610 aa22.98■■□□□ 1.27
UPF1-205ENST00000598209 TTBK1Q5TCY1 1321 aaPredicted RBP22.98■■□□□ 1.27
UPF1-205ENST00000598209 TRHP20396 242 aaPredicted RBP22.96■■□□□ 1.27
UPF1-205ENST00000598209 GOLGA3Q08378 1498 aa22.96■■□□□ 1.27
UPF1-205ENST00000598209 NPM1P06748 294 aaKnown RBP eCLIP22.88■■□□□ 1.25
UPF1-205ENST00000598209 UACAQ9BZF9 1416 aa22.86■■□□□ 1.25
UPF1-205ENST00000598209 SAMD9Q5K651 1589 aa22.85■■□□□ 1.25
UPF1-205ENST00000598209 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
UPF1-205ENST00000598209 UHRF1BP1LA0JNW5 1464 aa22.85■■□□□ 1.25
UPF1-205ENST00000598209 ABCC2Q92887 1545 aa22.83■■□□□ 1.25
UPF1-205ENST00000598209 MAPKBP1O60336 1514 aa22.82■■□□□ 1.24
UPF1-205ENST00000598209 UBTFP17480 764 aaKnown RBP22.8■■□□□ 1.24
UPF1-205ENST00000598209 P3H3Q8IVL6 736 aa22.8■■□□□ 1.24
UPF1-205ENST00000598209 RANGAP1P46060 587 aaPredicted RBP22.79■■□□□ 1.24
UPF1-205ENST00000598209 KIF13AQ9H1H9 1805 aa22.79■■□□□ 1.24
UPF1-205ENST00000598209 PLB1Q6P1J6 1458 aa22.78■■□□□ 1.24
UPF1-205ENST00000598209 ABCA8O94911 1581 aa22.76■■□□□ 1.23
UPF1-205ENST00000598209 KDM5BQ9UGL1 1544 aa22.74■■□□□ 1.23
UPF1-205ENST00000598209 ZCCHC11Q5TAX3 1644 aaKnown RBP22.74■■□□□ 1.23
UPF1-205ENST00000598209 EFCAB5A4FU69 1503 aa22.73■■□□□ 1.23
UPF1-205ENST00000598209 ABCC10Q5T3U5 1492 aa22.72■■□□□ 1.23
UPF1-205ENST00000598209 DIP2BQ9P265 1576 aa22.71■■□□□ 1.23
UPF1-205ENST00000598209 FHOD3Q2V2M9 1422 aa22.7■■□□□ 1.22
UPF1-205ENST00000598209 ASXL2Q76L83 1435 aa22.68■■□□□ 1.22
UPF1-205ENST00000598209 FAM69CQ0P6D2 419 aa22.66■■□□□ 1.22
UPF1-205ENST00000598209 RAPGEF6Q8TEU7 1601 aa22.66■■□□□ 1.22
UPF1-205ENST00000598209 ARHGAP35Q9NRY4 1499 aa22.6■■□□□ 1.21
UPF1-205ENST00000598209 TSPOAP1O95153 1857 aa22.58■■□□□ 1.21
UPF1-205ENST00000598209 GLI2P10070 1586 aa22.57■■□□□ 1.2
UPF1-205ENST00000598209 ATP10BO94823 1461 aa22.56■■□□□ 1.2
UPF1-205ENST00000598209 WDR7Q9Y4E6 1490 aa22.56■■□□□ 1.2
UPF1-205ENST00000598209 ARID3CA6NKF2 412 aa22.56■■□□□ 1.2
UPF1-205ENST00000598209 EPRSP07814 1512 aaKnown RBP22.55■■□□□ 1.2
UPF1-205ENST00000598209 NUP153P49790 1475 aaKnown RBP22.54■■□□□ 1.2
UPF1-205ENST00000598209 FMN1Q68DA7 1419 aa22.5■■□□□ 1.19
UPF1-205ENST00000598209 MAP3K4Q9Y6R4 1608 aa22.49■■□□□ 1.19
UPF1-205ENST00000598209 PPRC1Q5VV67 1664 aaKnown RBP22.47■■□□□ 1.19
UPF1-205ENST00000598209 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
UPF1-205ENST00000598209 HNRNPUL2Q1KMD3 747 aaKnown RBP22.45■■□□□ 1.18
UPF1-205ENST00000598209 CLIP1P30622 1438 aa22.45■■□□□ 1.18
UPF1-205ENST00000598209 HECW1Q76N89 1606 aa22.44■■□□□ 1.18
UPF1-205ENST00000598209 KCNH8Q96L42 1107 aa22.44■■□□□ 1.18
UPF1-205ENST00000598209 CFAP43Q8NDM7 1665 aa22.42■■□□□ 1.18
UPF1-205ENST00000598209 CDK13Q14004 1512 aaKnown RBP22.4■■□□□ 1.18
UPF1-205ENST00000598209 ATP1B4Q9UN42 357 aaPredicted RBP22.39■■□□□ 1.17
UPF1-205ENST00000598209 LOC105371045A0A1W2PR82 267 aa22.37■■□□□ 1.17
UPF1-205ENST00000598209 PCF11O94913 1555 aaKnown RBP22.37■■□□□ 1.17
UPF1-205ENST00000598209 LRRIQ1Q96JM4 1722 aa22.37■■□□□ 1.17
UPF1-205ENST00000598209 KDM6BO15054 1643 aa22.36■■□□□ 1.17
UPF1-205ENST00000598209 CD109Q6YHK3 1445 aa22.35■■□□□ 1.17
UPF1-205ENST00000598209 ABCA9Q8IUA7 1624 aa22.35■■□□□ 1.17
UPF1-205ENST00000598209 TEX14Q8IWB6 1497 aa22.34■■□□□ 1.17
UPF1-205ENST00000598209 CEP162Q5TB80 1403 aa22.34■■□□□ 1.17
UPF1-205ENST00000598209 PLEKHD1A6NEE1 506 aa22.34■■□□□ 1.17
UPF1-205ENST00000598209 CASKIN1Q8WXD9 1431 aa22.33■■□□□ 1.17
UPF1-205ENST00000598209 MAGI3Q5TCQ9 1506 aa22.31■■□□□ 1.16
UPF1-205ENST00000598209 FYCO1Q9BQS8 1478 aa22.28■■□□□ 1.16
UPF1-205ENST00000598209 CCDC18Q5T9S5 1454 aa22.26■■□□□ 1.15
UPF1-205ENST00000598209 CDK11AQ9UQ88 783 aaPredicted RBP22.24■■□□□ 1.15
UPF1-205ENST00000598209 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.24■■□□□ 1.15
UPF1-205ENST00000598209 TTC37Q6PGP7 1564 aa22.22■■□□□ 1.15
UPF1-205ENST00000598209 COL17A1Q9UMD9 1497 aaPredicted RBP22.21■■□□□ 1.15
UPF1-205ENST00000598209 TROQ12816 1431 aaPredicted RBP22.2■■□□□ 1.14
UPF1-205ENST00000598209 KIF14Q15058 1648 aa22.18■■□□□ 1.14
UPF1-205ENST00000598209 NEO1Q92859 1461 aa22.14■■□□□ 1.13
UPF1-205ENST00000598209 MYO5CQ9NQX4 1742 aa22.14■■□□□ 1.13
UPF1-205ENST00000598209 PHLDB1Q86UU1 1377 aa22.12■■□□□ 1.13
UPF1-205ENST00000598209 ARAP3Q8WWN8 1544 aa22.12■■□□□ 1.13
UPF1-205ENST00000598209 CFAP74Q9C0B2 1584 aa22.12■■□□□ 1.13
UPF1-205ENST00000598209 FANCAO15360 1455 aa22.09■■□□□ 1.13
UPF1-205ENST00000598209 PLCH2O75038 1416 aa22.08■■□□□ 1.13
UPF1-205ENST00000598209 VPS8Q8N3P4 1428 aa22.08■■□□□ 1.13
UPF1-205ENST00000598209 AKNAQ7Z591 1439 aa22.05■■□□□ 1.12
UPF1-205ENST00000598209 CDC42BPBQ9Y5S2 1711 aa22.03■■□□□ 1.12
UPF1-205ENST00000598209 MTUS2Q5JR59 1369 aa22.01■■□□□ 1.11
UPF1-205ENST00000598209 CDC42BPAQ5VT25 1732 aa22.01■■□□□ 1.11
UPF1-205ENST00000598209 FRMPD1Q5SYB0 1578 aa22.01■■□□□ 1.11
UPF1-205ENST00000598209 PREX2Q70Z35 1606 aa22.01■■□□□ 1.11
UPF1-205ENST00000598209 ARHGAP5Q13017 1502 aa22.01■■□□□ 1.11
UPF1-205ENST00000598209 RICTORQ6R327 1708 aa22■■□□□ 1.11
UPF1-205ENST00000598209 RAPGEF3O95398 923 aa22■■□□□ 1.11
UPF1-205ENST00000598209 DENND4BO75064 1496 aaPredicted RBP21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms