RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 SHROOM2Q13796 1616 aa25.81■■□□□ 1.72
LIG1-215ENST00000597901 KIAA0586Q9BVV6 1533 aa25.75■■□□□ 1.71
LIG1-215ENST00000597901 CUL7Q14999 1698 aa25.72■■□□□ 1.71
LIG1-215ENST00000597901 RUSC2Q8N2Y8 1516 aa25.69■■□□□ 1.7
LIG1-215ENST00000597901 RAPGEF2Q9Y4G8 1499 aa25.58■■□□□ 1.69
LIG1-215ENST00000597901 NPM1P06748 294 aaKnown RBP eCLIP25.57■■□□□ 1.68
LIG1-215ENST00000597901 TTBK1Q5TCY1 1321 aaPredicted RBP25.52■■□□□ 1.68
LIG1-215ENST00000597901 PTPRGP23470 1445 aa25.52■■□□□ 1.68
LIG1-215ENST00000597901 CARMIL2Q6F5E8 1435 aa25.5■■□□□ 1.67
LIG1-215ENST00000597901 TNIKQ9UKE5 1360 aa25.47■■□□□ 1.67
LIG1-215ENST00000597901 IQGAP2Q13576 1575 aa25.44■■□□□ 1.66
LIG1-215ENST00000597901 CSRNP3Q8WYN3 585 aa25.41■■□□□ 1.66
LIG1-215ENST00000597901 PRXQ9BXM0 1461 aa25.4■■□□□ 1.66
LIG1-215ENST00000597901 FAM69CQ0P6D2 419 aa25.39■■□□□ 1.66
LIG1-215ENST00000597901 DISP1Q96F81 1524 aa25.37■■□□□ 1.65
LIG1-215ENST00000597901 ADCY10Q96PN6 1610 aa25.37■■□□□ 1.65
LIG1-215ENST00000597901 UGGT2Q9NYU1 1516 aa25.34■■□□□ 1.65
LIG1-215ENST00000597901 ABCC10Q5T3U5 1492 aa25.31■■□□□ 1.64
LIG1-215ENST00000597901 MAPKBP1O60336 1514 aa25.3■■□□□ 1.64
LIG1-215ENST00000597901 UACAQ9BZF9 1416 aa25.29■■□□□ 1.64
LIG1-215ENST00000597901 FAM9AQ8IZU1 332 aaPredicted RBP25.25■■□□□ 1.63
LIG1-215ENST00000597901 UHRF1BP1LA0JNW5 1464 aa25.25■■□□□ 1.63
LIG1-215ENST00000597901 ABCC2Q92887 1545 aa25.24■■□□□ 1.63
LIG1-215ENST00000597901 AEBP2Q6ZN18 517 aaPredicted RBP25.24■■□□□ 1.63
LIG1-215ENST00000597901 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
LIG1-215ENST00000597901 EEA1Q15075 1411 aa25.21■■□□□ 1.63
LIG1-215ENST00000597901 KIF13AQ9H1H9 1805 aa25.2■■□□□ 1.62
LIG1-215ENST00000597901 KIAA0556O60303 1618 aa25.19■■□□□ 1.62
LIG1-215ENST00000597901 GOLGA3Q08378 1498 aa25.19■■□□□ 1.62
LIG1-215ENST00000597901 ASXL2Q76L83 1435 aa25.16■■□□□ 1.62
LIG1-215ENST00000597901 P3H3Q8IVL6 736 aa25.16■■□□□ 1.62
LIG1-215ENST00000597901 DIP2BQ9P265 1576 aa25.15■■□□□ 1.62
LIG1-215ENST00000597901 PLB1Q6P1J6 1458 aa25.14■■□□□ 1.61
LIG1-215ENST00000597901 CTTNBP2Q8WZ74 1663 aa25.13■■□□□ 1.61
LIG1-215ENST00000597901 KDM5BQ9UGL1 1544 aa25.12■■□□□ 1.61
LIG1-215ENST00000597901 RANGAP1P46060 587 aaPredicted RBP25.05■■□□□ 1.6
LIG1-215ENST00000597901 ABCA8O94911 1581 aa24.99■■□□□ 1.59
LIG1-215ENST00000597901 EPRSP07814 1512 aaKnown RBP24.99■■□□□ 1.59
LIG1-215ENST00000597901 GLI2P10070 1586 aa24.99■■□□□ 1.59
LIG1-215ENST00000597901 KCNH8Q96L42 1107 aa24.98■■□□□ 1.59
LIG1-215ENST00000597901 ZCCHC11Q5TAX3 1644 aaKnown RBP24.97■■□□□ 1.59
LIG1-215ENST00000597901 ARID3CA6NKF2 412 aa24.96■■□□□ 1.59
LIG1-215ENST00000597901 EHMT2Q96KQ7 1210 aa24.96■■□□□ 1.59
LIG1-215ENST00000597901 UBTFP17480 764 aaKnown RBP24.94■■□□□ 1.58
LIG1-215ENST00000597901 KDM6BO15054 1643 aa24.94■■□□□ 1.58
LIG1-215ENST00000597901 TSPOAP1O95153 1857 aa24.92■■□□□ 1.58
LIG1-215ENST00000597901 WDR7Q9Y4E6 1490 aa24.92■■□□□ 1.58
LIG1-215ENST00000597901 SAMD9Q5K651 1589 aa24.89■■□□□ 1.58
LIG1-215ENST00000597901 KIF21BO75037 1637 aa24.89■■□□□ 1.57
LIG1-215ENST00000597901 ATP10BO94823 1461 aa24.89■■□□□ 1.57
LIG1-215ENST00000597901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.85■■□□□ 1.57
LIG1-215ENST00000597901 HNRNPUL2Q1KMD3 747 aaKnown RBP24.85■■□□□ 1.57
LIG1-215ENST00000597901 FHOD3Q2V2M9 1422 aa24.85■■□□□ 1.57
LIG1-215ENST00000597901 CD109Q6YHK3 1445 aa24.82■■□□□ 1.56
LIG1-215ENST00000597901 PPRC1Q5VV67 1664 aaKnown RBP24.8■■□□□ 1.56
LIG1-215ENST00000597901 MAP3K4Q9Y6R4 1608 aa24.79■■□□□ 1.56
LIG1-215ENST00000597901 TEX14Q8IWB6 1497 aa24.79■■□□□ 1.56
LIG1-215ENST00000597901 COL17A1Q9UMD9 1497 aaPredicted RBP24.79■■□□□ 1.56
LIG1-215ENST00000597901 RAPGEF6Q8TEU7 1601 aa24.74■■□□□ 1.55
LIG1-215ENST00000597901 NUP153P49790 1475 aaKnown RBP24.73■■□□□ 1.55
LIG1-215ENST00000597901 PLEKHD1A6NEE1 506 aa24.73■■□□□ 1.55
LIG1-215ENST00000597901 EFCAB5A4FU69 1503 aa24.72■■□□□ 1.55
LIG1-215ENST00000597901 MAGI3Q5TCQ9 1506 aa24.72■■□□□ 1.55
LIG1-215ENST00000597901 KDM4FA0A1W2PPD8 638 aa24.69■■□□□ 1.54
LIG1-215ENST00000597901 ATP1B4Q9UN42 357 aaPredicted RBP24.66■■□□□ 1.54
LIG1-215ENST00000597901 CFAP43Q8NDM7 1665 aa24.65■■□□□ 1.54
LIG1-215ENST00000597901 ARHGAP35Q9NRY4 1499 aa24.64■■□□□ 1.53
LIG1-215ENST00000597901 FMN1Q68DA7 1419 aa24.6■■□□□ 1.53
LIG1-215ENST00000597901 PHLDB1Q86UU1 1377 aa24.58■■□□□ 1.53
LIG1-215ENST00000597901 ABCA9Q8IUA7 1624 aa24.55■■□□□ 1.52
LIG1-215ENST00000597901 ARAP3Q8WWN8 1544 aa24.53■■□□□ 1.52
LIG1-215ENST00000597901 CDK11AQ9UQ88 783 aaPredicted RBP24.52■■□□□ 1.52
LIG1-215ENST00000597901 RAPGEF3O95398 923 aa24.51■■□□□ 1.51
LIG1-215ENST00000597901 CDK13Q14004 1512 aaKnown RBP24.5■■□□□ 1.51
LIG1-215ENST00000597901 NEO1Q92859 1461 aa24.48■■□□□ 1.51
LIG1-215ENST00000597901 ADGRL1O94910 1474 aa24.47■■□□□ 1.51
LIG1-215ENST00000597901 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.43■■□□□ 1.5
LIG1-215ENST00000597901 HECW1Q76N89 1606 aa24.4■■□□□ 1.5
LIG1-215ENST00000597901 AKNAQ7Z591 1439 aa24.4■■□□□ 1.5
LIG1-215ENST00000597901 CLIP1P30622 1438 aa24.38■■□□□ 1.49
LIG1-215ENST00000597901 PLCH2O75038 1416 aa24.37■■□□□ 1.49
LIG1-215ENST00000597901 CASKIN1Q8WXD9 1431 aa24.37■■□□□ 1.49
LIG1-215ENST00000597901 FANCAO15360 1455 aa24.37■■□□□ 1.49
LIG1-215ENST00000597901 EFCAB2Q5VUJ9 269 aa24.35■■□□□ 1.49
LIG1-215ENST00000597901 DENND4BO75064 1496 aaPredicted RBP24.34■■□□□ 1.49
LIG1-215ENST00000597901 TROQ12816 1431 aaPredicted RBP24.34■■□□□ 1.49
LIG1-215ENST00000597901 TTC37Q6PGP7 1564 aa24.32■■□□□ 1.48
LIG1-215ENST00000597901 SCAPERQ9BY12 1400 aa24.27■■□□□ 1.48
LIG1-215ENST00000597901 LOC105371045A0A1W2PR82 267 aa24.25■■□□□ 1.47
LIG1-215ENST00000597901 ARID4BQ4LE39 1312 aaPredicted RBP24.25■■□□□ 1.47
LIG1-215ENST00000597901 CCDC18Q5T9S5 1454 aa24.25■■□□□ 1.47
LIG1-215ENST00000597901 FRMPD1Q5SYB0 1578 aa24.24■■□□□ 1.47
LIG1-215ENST00000597901 PCF11O94913 1555 aaKnown RBP24.23■■□□□ 1.47
LIG1-215ENST00000597901 CFAP74Q9C0B2 1584 aa24.21■■□□□ 1.47
LIG1-215ENST00000597901 FYCO1Q9BQS8 1478 aa24.21■■□□□ 1.47
LIG1-215ENST00000597901 KIF14Q15058 1648 aa24.21■■□□□ 1.47
LIG1-215ENST00000597901 LRRIQ1Q96JM4 1722 aa24.2■■□□□ 1.46
LIG1-215ENST00000597901 AFAP1Q8N556 730 aa24.18■■□□□ 1.46
LIG1-215ENST00000597901 CEP162Q5TB80 1403 aa24.16■■□□□ 1.46
LIG1-215ENST00000597901 POGZQ7Z3K3 1410 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms