RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CLIP1P30622 1438 aa24.2■■□□□ 1.46
TRIM28-209ENST00000597423 KIAA0586Q9BVV6 1533 aa24.17■■□□□ 1.46
TRIM28-209ENST00000597423 NUP160Q12769 1436 aa24.14■■□□□ 1.45
TRIM28-209ENST00000597423 CTTNBP2Q8WZ74 1663 aa24.11■■□□□ 1.45
TRIM28-209ENST00000597423 IQGAP2Q13576 1575 aa24.07■■□□□ 1.44
TRIM28-209ENST00000597423 JPH4Q96JJ6 628 aa24.06■■□□□ 1.44
TRIM28-209ENST00000597423 CEP170Q5SW79 1584 aa24.05■■□□□ 1.44
TRIM28-209ENST00000597423 OSCARQ8IYS5 282 aa24.04■■□□□ 1.44
TRIM28-209ENST00000597423 CHD1O14646 1710 aa24.03■■□□□ 1.44
TRIM28-209ENST00000597423 EFCAB5A4FU69 1503 aa24.03■■□□□ 1.44
TRIM28-209ENST00000597423 ARHGAP35Q9NRY4 1499 aa24■■□□□ 1.43
TRIM28-209ENST00000597423 P3H3Q8IVL6 736 aa23.99■■□□□ 1.43
TRIM28-209ENST00000597423 UGGT2Q9NYU1 1516 aa23.99■■□□□ 1.43
TRIM28-209ENST00000597423 CARMIL2Q6F5E8 1435 aa23.96■■□□□ 1.43
TRIM28-209ENST00000597423 VPS8Q8N3P4 1428 aa23.92■■□□□ 1.42
TRIM28-209ENST00000597423 ARAP1Q96P48 1450 aa23.91■■□□□ 1.42
TRIM28-209ENST00000597423 APLP2Q06481 763 aa23.9■■□□□ 1.42
TRIM28-209ENST00000597423 SAMD9Q5K651 1589 aa23.89■■□□□ 1.41
TRIM28-209ENST00000597423 FMN1Q68DA7 1419 aa23.88■■□□□ 1.41
TRIM28-209ENST00000597423 FHOD3Q2V2M9 1422 aa23.87■■□□□ 1.41
TRIM28-209ENST00000597423 PRG4Q92954 1404 aaPredicted RBP23.85■■□□□ 1.41
TRIM28-209ENST00000597423 CLASP1Q7Z460 1538 aa23.84■■□□□ 1.41
TRIM28-209ENST00000597423 DISP1Q96F81 1524 aa23.84■■□□□ 1.41
TRIM28-209ENST00000597423 KIAA0556O60303 1618 aa23.79■■□□□ 1.4
TRIM28-209ENST00000597423 ATP1B4Q9UN42 357 aaPredicted RBP23.78■■□□□ 1.4
TRIM28-209ENST00000597423 SHROOM2Q13796 1616 aa23.77■■□□□ 1.4
TRIM28-209ENST00000597423 TTBK1Q5TCY1 1321 aaPredicted RBP23.75■■□□□ 1.39
TRIM28-209ENST00000597423 PTPRGP23470 1445 aa23.74■■□□□ 1.39
TRIM28-209ENST00000597423 CASKIN1Q8WXD9 1431 aa23.74■■□□□ 1.39
TRIM28-209ENST00000597423 FYCO1Q9BQS8 1478 aa23.68■■□□□ 1.38
TRIM28-209ENST00000597423 MAP3K1Q13233 1512 aa23.61■■□□□ 1.37
TRIM28-209ENST00000597423 PCF11O94913 1555 aaKnown RBP23.59■■□□□ 1.37
TRIM28-209ENST00000597423 CDK11AQ9UQ88 783 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-209ENST00000597423 ERCC6L2Q5T890 1561 aa23.57■■□□□ 1.36
TRIM28-209ENST00000597423 UACAQ9BZF9 1416 aa23.56■■□□□ 1.36
TRIM28-209ENST00000597423 CCDC18Q5T9S5 1454 aa23.56■■□□□ 1.36
TRIM28-209ENST00000597423 HECW1Q76N89 1606 aa23.55■■□□□ 1.36
TRIM28-209ENST00000597423 PPARGC1BQ86YN6 1023 aaKnown RBP23.55■■□□□ 1.36
TRIM28-209ENST00000597423 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.54■■□□□ 1.36
TRIM28-209ENST00000597423 HNRNPUL2Q1KMD3 747 aaKnown RBP23.54■■□□□ 1.36
TRIM28-209ENST00000597423 RAPGEF6Q8TEU7 1601 aa23.54■■□□□ 1.36
TRIM28-209ENST00000597423 PLB1Q6P1J6 1458 aa23.54■■□□□ 1.36
TRIM28-209ENST00000597423 ABCA8O94911 1581 aa23.5■■□□□ 1.35
TRIM28-209ENST00000597423 EPRSP07814 1512 aaKnown RBP23.49■■□□□ 1.35
TRIM28-209ENST00000597423 KANK4Q5T7N3 995 aaPredicted RBP23.49■■□□□ 1.35
TRIM28-209ENST00000597423 TIAM1Q13009 1591 aa23.48■■□□□ 1.35
TRIM28-209ENST00000597423 NUP153P49790 1475 aaKnown RBP23.48■■□□□ 1.35
TRIM28-209ENST00000597423 ARID3CA6NKF2 412 aa23.47■■□□□ 1.35
TRIM28-209ENST00000597423 UHRF1BP1LA0JNW5 1464 aa23.45■■□□□ 1.34
TRIM28-209ENST00000597423 MTUS2Q5JR59 1369 aa23.45■■□□□ 1.34
TRIM28-209ENST00000597423 LRRC9Q6ZRR7 1453 aa23.44■■□□□ 1.34
TRIM28-209ENST00000597423 PLEKHD1A6NEE1 506 aa23.44■■□□□ 1.34
TRIM28-209ENST00000597423 ARHGEF11O15085 1522 aa23.43■■□□□ 1.34
TRIM28-209ENST00000597423 NPM1P06748 294 aaKnown RBP eCLIP23.42■■□□□ 1.34
TRIM28-209ENST00000597423 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-209ENST00000597423 ABCC2Q92887 1545 aa23.42■■□□□ 1.34
TRIM28-209ENST00000597423 ATP10BO94823 1461 aa23.4■■□□□ 1.34
TRIM28-209ENST00000597423 CFAP43Q8NDM7 1665 aa23.38■■□□□ 1.33
TRIM28-209ENST00000597423 CDK13Q14004 1512 aaKnown RBP23.36■■□□□ 1.33
TRIM28-209ENST00000597423 CYB5RLQ6IPT4 315 aa23.35■■□□□ 1.33
TRIM28-209ENST00000597423 EHBP1L1Q8N3D4 1523 aa23.32■■□□□ 1.32
TRIM28-209ENST00000597423 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
TRIM28-209ENST00000597423 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
TRIM28-209ENST00000597423 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
TRIM28-209ENST00000597423 KDM5BQ9UGL1 1544 aa23.3■■□□□ 1.32
TRIM28-209ENST00000597423 TROQ12816 1431 aaPredicted RBP23.3■■□□□ 1.32
TRIM28-209ENST00000597423 LRRIQ1Q96JM4 1722 aa23.3■■□□□ 1.32
TRIM28-209ENST00000597423 ADCY10Q96PN6 1610 aa23.24■■□□□ 1.31
TRIM28-209ENST00000597423 NCOA2Q15596 1464 aa23.22■■□□□ 1.31
TRIM28-209ENST00000597423 MAGI3Q5TCQ9 1506 aa23.22■■□□□ 1.31
TRIM28-209ENST00000597423 SUPT6HQ7KZ85 1726 aaKnown RBP23.22■■□□□ 1.31
TRIM28-209ENST00000597423 PCGF6Q9BYE7 350 aa23.21■■□□□ 1.31
TRIM28-209ENST00000597423 ZCCHC11Q5TAX3 1644 aaKnown RBP23.19■■□□□ 1.3
TRIM28-209ENST00000597423 CCNB3Q8WWL7 1395 aa23.18■■□□□ 1.3
TRIM28-209ENST00000597423 KCNH8Q96L42 1107 aa23.18■■□□□ 1.3
TRIM28-209ENST00000597423 PHLDB1Q86UU1 1377 aa23.17■■□□□ 1.3
TRIM28-209ENST00000597423 DNAJC5Q9H3Z4 198 aa23.15■■□□□ 1.3
TRIM28-209ENST00000597423 MYOM3Q5VTT5 1437 aa23.13■■□□□ 1.29
TRIM28-209ENST00000597423 RRBP1Q9P2E9 1410 aaKnown RBP23.13■■□□□ 1.29
TRIM28-209ENST00000597423 KIF14Q15058 1648 aa23.11■■□□□ 1.29
TRIM28-209ENST00000597423 ASXL2Q76L83 1435 aa23.11■■□□□ 1.29
TRIM28-209ENST00000597423 WDR7Q9Y4E6 1490 aa23.11■■□□□ 1.29
TRIM28-209ENST00000597423 MIA2Q96PC5 1412 aa23.1■■□□□ 1.29
TRIM28-209ENST00000597423 FAM50AQ14320 339 aaKnown RBP23.09■■□□□ 1.29
TRIM28-209ENST00000597423 CFDP1Q9UEE9 299 aaPredicted RBP23.09■■□□□ 1.29
TRIM28-209ENST00000597423 FGD6Q6ZV73 1430 aa23.08■■□□□ 1.28
TRIM28-209ENST00000597423 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.07■■□□□ 1.28
TRIM28-209ENST00000597423 ABCC10Q5T3U5 1492 aa23.04■■□□□ 1.28
TRIM28-209ENST00000597423 GPATCH8Q9UKJ3 1502 aaKnown RBP23.03■■□□□ 1.28
TRIM28-209ENST00000597423 MAPKBP1O60336 1514 aa23■■□□□ 1.27
TRIM28-209ENST00000597423 EFCAB2Q5VUJ9 269 aa22.98■■□□□ 1.27
TRIM28-209ENST00000597423 ZNF777Q9ULD5 760 aaPredicted RBP22.98■■□□□ 1.27
TRIM28-209ENST00000597423 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.98■■□□□ 1.272e-6■□□□□ 10.6
TRIM28-209ENST00000597423 PLCH2O75038 1416 aa22.96■■□□□ 1.27
TRIM28-209ENST00000597423 ITSN2Q9NZM3 1697 aa22.96■■□□□ 1.27
TRIM28-209ENST00000597423 ITGAEP38570 1179 aa22.95■■□□□ 1.26
TRIM28-209ENST00000597423 TCOF1Q13428 1488 aaKnown RBP22.94■■□□□ 1.26
TRIM28-209ENST00000597423 PTPN23Q9H3S7 1636 aa22.93■■□□□ 1.26
TRIM28-209ENST00000597423 RSPH4AQ5TD94 716 aa22.92■■□□□ 1.26
TRIM28-209ENST00000597423 ZNF644Q9H582 1327 aaPredicted RBP22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms