RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MAPKBP1O60336 1514 aa16.4■□□□□ 0.22
TRIM28-208ENST00000597172 NUP160Q12769 1436 aa16.39■□□□□ 0.21
TRIM28-208ENST00000597172 SHROOM2Q13796 1616 aa16.37■□□□□ 0.21
TRIM28-208ENST00000597172 ILDR2Q71H61 639 aa16.35■□□□□ 0.21
TRIM28-208ENST00000597172 PRG4Q92954 1404 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-208ENST00000597172 CUX1P39880 1505 aa16.31■□□□□ 0.2
TRIM28-208ENST00000597172 JPH4Q96JJ6 628 aa16.31■□□□□ 0.2
TRIM28-208ENST00000597172 ABCA5Q8WWZ7 1642 aa16.26■□□□□ 0.19
TRIM28-208ENST00000597172 DISP3Q9P2K9 1392 aa16.25■□□□□ 0.19
TRIM28-208ENST00000597172 ABCA10Q8WWZ4 1543 aa16.24■□□□□ 0.19
TRIM28-208ENST00000597172 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
TRIM28-208ENST00000597172 ADAMTS12P58397 1594 aa16.21■□□□□ 0.19
TRIM28-208ENST00000597172 FHAD1B1AJZ9 1412 aa16.2■□□□□ 0.18
TRIM28-208ENST00000597172 COL17A1Q9UMD9 1497 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-208ENST00000597172 TOP2BQ02880 1626 aa16.15■□□□□ 0.18
TRIM28-208ENST00000597172 PPRC1Q5VV67 1664 aaKnown RBP16.13■□□□□ 0.17
TRIM28-208ENST00000597172 GLI2P10070 1586 aa16.08■□□□□ 0.16
TRIM28-208ENST00000597172 PLB1Q6P1J6 1458 aa16.05■□□□□ 0.16
TRIM28-208ENST00000597172 CHIC1Q5VXU3 224 aa16.05■□□□□ 0.16
TRIM28-208ENST00000597172 ASXL2Q76L83 1435 aa16.04■□□□□ 0.16
TRIM28-208ENST00000597172 CERKQ8TCT0 537 aa16.03■□□□□ 0.16
TRIM28-208ENST00000597172 WRNQ14191 1432 aaPredicted RBP eCLIP16.02■□□□□ 0.16
TRIM28-208ENST00000597172 ERICH3Q5RHP9 1530 aa16.01■□□□□ 0.15
TRIM28-208ENST00000597172 TEX14Q8IWB6 1497 aa16.01■□□□□ 0.15
TRIM28-208ENST00000597172 RUSC2Q8N2Y8 1516 aa15.99■□□□□ 0.15
TRIM28-208ENST00000597172 PTPRGP23470 1445 aa15.99■□□□□ 0.15
TRIM28-208ENST00000597172 ABCC2Q92887 1545 aa15.98■□□□□ 0.15
TRIM28-208ENST00000597172 TTBK1Q5TCY1 1321 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-208ENST00000597172 PTPRMP28827 1452 aa15.94■□□□□ 0.14
TRIM28-208ENST00000597172 EPRSP07814 1512 aaKnown RBP15.93■□□□□ 0.14
TRIM28-208ENST00000597172 MAP3K4Q9Y6R4 1608 aa15.92■□□□□ 0.14
TRIM28-208ENST00000597172 SPATA31D1Q6ZQQ2 1576 aa15.92■□□□□ 0.14
TRIM28-208ENST00000597172 PCF11O94913 1555 aaKnown RBP15.91■□□□□ 0.14
TRIM28-208ENST00000597172 KIAA0586Q9BVV6 1533 aa15.89■□□□□ 0.13
TRIM28-208ENST00000597172 KIF21BO75037 1637 aa15.86■□□□□ 0.13
TRIM28-208ENST00000597172 CUL7Q14999 1698 aa15.86■□□□□ 0.13
TRIM28-208ENST00000597172 HSPA2P54652 639 aa15.85■□□□□ 0.13
TRIM28-208ENST00000597172 TNIKQ9UKE5 1360 aa15.85■□□□□ 0.13
TRIM28-208ENST00000597172 BIVM-ERCC5R4GMW8 1640 aa15.83■□□□□ 0.13
TRIM28-208ENST00000597172 UHRF1BP1LA0JNW5 1464 aa15.83■□□□□ 0.12
TRIM28-208ENST00000597172 ADAMTSL3P82987 1691 aa15.81■□□□□ 0.12
TRIM28-208ENST00000597172 UACAQ9BZF9 1416 aa15.8■□□□□ 0.12
TRIM28-208ENST00000597172 CARMIL2Q6F5E8 1435 aa15.79■□□□□ 0.12
TRIM28-208ENST00000597172 KDM5BQ9UGL1 1544 aa15.77■□□□□ 0.11
TRIM28-208ENST00000597172 CD109Q6YHK3 1445 aa15.77■□□□□ 0.11
TRIM28-208ENST00000597172 MAGI3Q5TCQ9 1506 aa15.75■□□□□ 0.11
TRIM28-208ENST00000597172 ARID4BQ4LE39 1312 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-208ENST00000597172 KCNH8Q96L42 1107 aa15.7■□□□□ 0.1
TRIM28-208ENST00000597172 WDR7Q9Y4E6 1490 aa15.7■□□□□ 0.1
TRIM28-208ENST00000597172 ZCCHC11Q5TAX3 1644 aaKnown RBP15.69■□□□□ 0.1
TRIM28-208ENST00000597172 MADDQ8WXG6 1647 aa15.69■□□□□ 0.1
TRIM28-208ENST00000597172 PLPPR3Q6T4P5 718 aa15.68■□□□□ 0.1
TRIM28-208ENST00000597172 BCORL1Q5H9F3 1711 aa15.67■□□□□ 0.1
TRIM28-208ENST00000597172 ARAP3Q8WWN8 1544 aa15.66■□□□□ 0.1
TRIM28-208ENST00000597172 CFAP43Q8NDM7 1665 aa15.65■□□□□ 0.1
TRIM28-208ENST00000597172 IGF1RP08069 1367 aa15.64■□□□□ 0.09
TRIM28-208ENST00000597172 DMRT2Q9Y5R5 561 aa15.63■□□□□ 0.09
TRIM28-208ENST00000597172 FAM9AQ8IZU1 332 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-208ENST00000597172 RIMS1Q86UR5 1692 aaKnown RBP15.61■□□□□ 0.09
TRIM28-208ENST00000597172 RAPGEF3O95398 923 aa15.61■□□□□ 0.09
TRIM28-208ENST00000597172 KIF27Q86VH2 1401 aa15.59■□□□□ 0.09
TRIM28-208ENST00000597172 DISP1Q96F81 1524 aa15.58■□□□□ 0.09
TRIM28-208ENST00000597172 PHLDB1Q86UU1 1377 aa15.57■□□□□ 0.08
TRIM28-208ENST00000597172 YEATS2Q9ULM3 1422 aa15.56■□□□□ 0.08
TRIM28-208ENST00000597172 IQGAP2Q13576 1575 aa15.55■□□□□ 0.08
TRIM28-208ENST00000597172 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
TRIM28-208ENST00000597172 EEA1Q15075 1411 aa15.54■□□□□ 0.08
TRIM28-208ENST00000597172 CARMIL1Q5VZK9 1371 aa15.52■□□□□ 0.08
TRIM28-208ENST00000597172 POGZQ7Z3K3 1410 aa15.47■□□□□ 0.07
TRIM28-208ENST00000597172 STRCQ7RTU9 1775 aa15.47■□□□□ 0.07
TRIM28-208ENST00000597172 IQSEC2Q5JU85 1478 aa15.46■□□□□ 0.06
TRIM28-208ENST00000597172 MLECQ14165 292 aa15.44■□□□□ 0.06
TRIM28-208ENST00000597172 UGGT2Q9NYU1 1516 aa15.43■□□□□ 0.06
TRIM28-208ENST00000597172 LOC105371045A0A1W2PR82 267 aa15.43■□□□□ 0.06
TRIM28-208ENST00000597172 PTPRTO14522 1441 aa15.43■□□□□ 0.06
TRIM28-208ENST00000597172 NEO1Q92859 1461 aa15.42■□□□□ 0.06
TRIM28-208ENST00000597172 PRXQ9BXM0 1461 aa15.42■□□□□ 0.06
TRIM28-208ENST00000597172 UBAP1LF5GYI3 381 aa15.42■□□□□ 0.06
TRIM28-208ENST00000597172 LTBP4Q8N2S1 1624 aa15.42■□□□□ 0.06
TRIM28-208ENST00000597172 KIAA0556O60303 1618 aa15.41■□□□□ 0.06
TRIM28-208ENST00000597172 FRMPD1Q5SYB0 1578 aa15.41■□□□□ 0.06
TRIM28-208ENST00000597172 FANCAO15360 1455 aa15.4■□□□□ 0.06
TRIM28-208ENST00000597172 ARHGEF40Q8TER5 1519 aa15.4■□□□□ 0.06
TRIM28-208ENST00000597172 PREX1Q8TCU6 1659 aa15.39■□□□□ 0.05
TRIM28-208ENST00000597172 EHMT2Q96KQ7 1210 aa15.39■□□□□ 0.05
TRIM28-208ENST00000597172 CEBPAP49715 358 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-208ENST00000597172 AKNAQ7Z591 1439 aa15.37■□□□□ 0.05
TRIM28-208ENST00000597172 SETD1BQ9UPS6 1966 aaKnown RBP15.37■□□□□ 0.05
TRIM28-208ENST00000597172 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
TRIM28-208ENST00000597172 ABCA8O94911 1581 aa15.36■□□□□ 0.05
TRIM28-208ENST00000597172 MED1Q15648 1581 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-208ENST00000597172 TTC37Q6PGP7 1564 aa15.36■□□□□ 0.05
TRIM28-208ENST00000597172 ABCA9Q8IUA7 1624 aa15.35■□□□□ 0.05
TRIM28-208ENST00000597172 FER1L4A9Z1Z3 1794 aa15.34■□□□□ 0.05
TRIM28-208ENST00000597172 ARID3CA6NKF2 412 aa15.34■□□□□ 0.05
TRIM28-208ENST00000597172 PHF23Q9BUL5 403 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-208ENST00000597172 UHRF1BP1Q6BDS2 1440 aa15.34■□□□□ 0.05
TRIM28-208ENST00000597172 DENND4BO75064 1496 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-208ENST00000597172 HSPA1LP34931 641 aa15.3■□□□□ 0.04
TRIM28-208ENST00000597172 GOLGA3Q08378 1498 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms