RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CEP170Q5SW79 1584 aa18.62■□□□□ 0.57
LIG1-211ENST00000596457 NUP160Q12769 1436 aa18.59■□□□□ 0.57
LIG1-211ENST00000596457 FAM9AQ8IZU1 332 aaPredicted RBP18.56■□□□□ 0.56
LIG1-211ENST00000596457 RAPGEF2Q9Y4G8 1499 aa18.5■□□□□ 0.55
LIG1-211ENST00000596457 SHROOM2Q13796 1616 aa18.49■□□□□ 0.55
LIG1-211ENST00000596457 CSRNP3Q8WYN3 585 aa18.47■□□□□ 0.55
LIG1-211ENST00000596457 JPH4Q96JJ6 628 aa18.46■□□□□ 0.55
LIG1-211ENST00000596457 ERCC6L2Q5T890 1561 aa18.45■□□□□ 0.54
LIG1-211ENST00000596457 KIAA0586Q9BVV6 1533 aa18.44■□□□□ 0.54
LIG1-211ENST00000596457 EEA1Q15075 1411 aa18.42■□□□□ 0.54
LIG1-211ENST00000596457 PRG4Q92954 1404 aaPredicted RBP18.42■□□□□ 0.54
LIG1-211ENST00000596457 PRXQ9BXM0 1461 aa18.39■□□□□ 0.54
LIG1-211ENST00000596457 EHMT2Q96KQ7 1210 aa18.39■□□□□ 0.53
LIG1-211ENST00000596457 IQGAP2Q13576 1575 aa18.38■□□□□ 0.53
LIG1-211ENST00000596457 CTTNBP2Q8WZ74 1663 aa18.37■□□□□ 0.53
LIG1-211ENST00000596457 TTBK1Q5TCY1 1321 aaPredicted RBP18.35■□□□□ 0.53
LIG1-211ENST00000596457 CARMIL2Q6F5E8 1435 aa18.27■□□□□ 0.52
LIG1-211ENST00000596457 RANGAP1P46060 587 aaPredicted RBP18.27■□□□□ 0.52
LIG1-211ENST00000596457 KIF21BO75037 1637 aa18.26■□□□□ 0.51
LIG1-211ENST00000596457 UGGT2Q9NYU1 1516 aa18.23■□□□□ 0.51
LIG1-211ENST00000596457 NPM1P06748 294 aaKnown RBP eCLIP18.23■□□□□ 0.51
LIG1-211ENST00000596457 UBTFP17480 764 aaKnown RBP18.23■□□□□ 0.51
LIG1-211ENST00000596457 DISP1Q96F81 1524 aa18.21■□□□□ 0.51
LIG1-211ENST00000596457 TNIKQ9UKE5 1360 aa18.2■□□□□ 0.5
LIG1-211ENST00000596457 PTPRGP23470 1445 aa18.2■□□□□ 0.5
LIG1-211ENST00000596457 KIAA0556O60303 1618 aa18.2■□□□□ 0.5
LIG1-211ENST00000596457 P3H3Q8IVL6 736 aa18.19■□□□□ 0.5
LIG1-211ENST00000596457 GOLGA3Q08378 1498 aa18.17■□□□□ 0.5
LIG1-211ENST00000596457 KDM4FA0A1W2PPD8 638 aa18.16■□□□□ 0.5
LIG1-211ENST00000596457 MAPKBP1O60336 1514 aa18.13■□□□□ 0.49
LIG1-211ENST00000596457 ADCY10Q96PN6 1610 aa18.12■□□□□ 0.49
LIG1-211ENST00000596457 KIF13AQ9H1H9 1805 aa18.1■□□□□ 0.49
LIG1-211ENST00000596457 ABCC10Q5T3U5 1492 aa18.07■□□□□ 0.48
LIG1-211ENST00000596457 SAMD9Q5K651 1589 aa18.07■□□□□ 0.48
LIG1-211ENST00000596457 UACAQ9BZF9 1416 aa18.06■□□□□ 0.48
LIG1-211ENST00000596457 UHRF1BP1LA0JNW5 1464 aa18.04■□□□□ 0.48
LIG1-211ENST00000596457 FAM69CQ0P6D2 419 aa18.04■□□□□ 0.48
LIG1-211ENST00000596457 PLB1Q6P1J6 1458 aa18.02■□□□□ 0.48
LIG1-211ENST00000596457 FHOD3Q2V2M9 1422 aa18.02■□□□□ 0.48
LIG1-211ENST00000596457 ABCC2Q92887 1545 aa18.02■□□□□ 0.47
LIG1-211ENST00000596457 DIP2BQ9P265 1576 aa18■□□□□ 0.47
LIG1-211ENST00000596457 ARID3CA6NKF2 412 aa17.99■□□□□ 0.47
LIG1-211ENST00000596457 EFCAB5A4FU69 1503 aa17.98■□□□□ 0.47
LIG1-211ENST00000596457 ABCA8O94911 1581 aa17.97■□□□□ 0.47
LIG1-211ENST00000596457 ZCCHC11Q5TAX3 1644 aaKnown RBP17.97■□□□□ 0.47
LIG1-211ENST00000596457 LOC105371045A0A1W2PR82 267 aa17.95■□□□□ 0.46
LIG1-211ENST00000596457 RAPGEF6Q8TEU7 1601 aa17.94■□□□□ 0.46
LIG1-211ENST00000596457 KDM5BQ9UGL1 1544 aa17.93■□□□□ 0.46
LIG1-211ENST00000596457 ARHGAP35Q9NRY4 1499 aa17.93■□□□□ 0.46
LIG1-211ENST00000596457 ASXL2Q76L83 1435 aa17.92■□□□□ 0.46
LIG1-211ENST00000596457 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
LIG1-211ENST00000596457 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
LIG1-211ENST00000596457 ATP1B4Q9UN42 357 aaPredicted RBP17.92■□□□□ 0.46
LIG1-211ENST00000596457 HECW2Q9P2P5 1572 aa17.91■□□□□ 0.46
LIG1-211ENST00000596457 GLI2P10070 1586 aa17.9■□□□□ 0.46
LIG1-211ENST00000596457 FBXO41Q8TF61 875 aa17.89■□□□□ 0.45
LIG1-211ENST00000596457 KDM6BO15054 1643 aa17.88■□□□□ 0.45
LIG1-211ENST00000596457 CLIP1P30622 1438 aa17.87■□□□□ 0.45
LIG1-211ENST00000596457 TSPOAP1O95153 1857 aa17.86■□□□□ 0.45
LIG1-211ENST00000596457 KCNH8Q96L42 1107 aa17.85■□□□□ 0.45
LIG1-211ENST00000596457 ATP10BO94823 1461 aa17.84■□□□□ 0.45
LIG1-211ENST00000596457 FMN1Q68DA7 1419 aa17.83■□□□□ 0.45
LIG1-211ENST00000596457 NUP153P49790 1475 aaKnown RBP17.82■□□□□ 0.44
LIG1-211ENST00000596457 LMTK3Q96Q04 1460 aa17.82■□□□□ 0.44
LIG1-211ENST00000596457 EPRSP07814 1512 aaKnown RBP17.82■□□□□ 0.44
LIG1-211ENST00000596457 WDR7Q9Y4E6 1490 aa17.81■□□□□ 0.44
LIG1-211ENST00000596457 CEP162Q5TB80 1403 aa17.79■□□□□ 0.44
LIG1-211ENST00000596457 HECW1Q76N89 1606 aa17.78■□□□□ 0.44
LIG1-211ENST00000596457 ADGRL1O94910 1474 aa17.77■□□□□ 0.44
LIG1-211ENST00000596457 MAP3K4Q9Y6R4 1608 aa17.77■□□□□ 0.44
LIG1-211ENST00000596457 TEX14Q8IWB6 1497 aa17.76■□□□□ 0.43
LIG1-211ENST00000596457 CDK13Q14004 1512 aaKnown RBP17.76■□□□□ 0.43
LIG1-211ENST00000596457 PPRC1Q5VV67 1664 aaKnown RBP17.75■□□□□ 0.43
LIG1-211ENST00000596457 PLEKHD1A6NEE1 506 aa17.75■□□□□ 0.43
LIG1-211ENST00000596457 PCF11O94913 1555 aaKnown RBP17.74■□□□□ 0.43
LIG1-211ENST00000596457 LRRIQ1Q96JM4 1722 aa17.73■□□□□ 0.43
LIG1-211ENST00000596457 CFAP43Q8NDM7 1665 aa17.71■□□□□ 0.43
LIG1-211ENST00000596457 CASKIN1Q8WXD9 1431 aa17.7■□□□□ 0.42
LIG1-211ENST00000596457 CD109Q6YHK3 1445 aa17.68■□□□□ 0.42
LIG1-211ENST00000596457 MAGI3Q5TCQ9 1506 aa17.67■□□□□ 0.42
LIG1-211ENST00000596457 CDK11AQ9UQ88 783 aaPredicted RBP17.67■□□□□ 0.42
LIG1-211ENST00000596457 SOCS7O14512 581 aa17.66■□□□□ 0.42
LIG1-211ENST00000596457 FYCO1Q9BQS8 1478 aa17.65■□□□□ 0.42
LIG1-211ENST00000596457 CCDC18Q5T9S5 1454 aa17.63■□□□□ 0.41
LIG1-211ENST00000596457 ABCA9Q8IUA7 1624 aa17.62■□□□□ 0.41
LIG1-211ENST00000596457 ILDR2Q71H61 639 aa17.61■□□□□ 0.41
LIG1-211ENST00000596457 PHLDB1Q86UU1 1377 aa17.61■□□□□ 0.41
LIG1-211ENST00000596457 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.59■□□□□ 0.41
LIG1-211ENST00000596457 COL17A1Q9UMD9 1497 aaPredicted RBP17.59■□□□□ 0.41
LIG1-211ENST00000596457 KIF14Q15058 1648 aa17.57■□□□□ 0.4
LIG1-211ENST00000596457 TTC37Q6PGP7 1564 aa17.57■□□□□ 0.4
LIG1-211ENST00000596457 TROQ12816 1431 aaPredicted RBP17.56■□□□□ 0.4
LIG1-211ENST00000596457 VPS8Q8N3P4 1428 aa17.55■□□□□ 0.4
LIG1-211ENST00000596457 ARAP3Q8WWN8 1544 aa17.53■□□□□ 0.4
LIG1-211ENST00000596457 MYO5CQ9NQX4 1742 aa17.52■□□□□ 0.39
LIG1-211ENST00000596457 MTUS2Q5JR59 1369 aa17.51■□□□□ 0.39
LIG1-211ENST00000596457 NEO1Q92859 1461 aa17.5■□□□□ 0.39
LIG1-211ENST00000596457 DISP3Q9P2K9 1392 aa17.5■□□□□ 0.39
LIG1-211ENST00000596457 FANCAO15360 1455 aa17.47■□□□□ 0.39
LIG1-211ENST00000596457 CFAP74Q9C0B2 1584 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms