RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 KIAA0586Q9BVV6 1533 aa18.7■□□□□ 0.58
SHKBP1-206ENST00000595523 PRG4Q92954 1404 aaPredicted RBP18.67■□□□□ 0.58
SHKBP1-206ENST00000595523 RAPGEF2Q9Y4G8 1499 aa18.66■□□□□ 0.58
SHKBP1-206ENST00000595523 JPH4Q96JJ6 628 aa18.66■□□□□ 0.58
SHKBP1-206ENST00000595523 IQGAP2Q13576 1575 aa18.63■□□□□ 0.57
SHKBP1-206ENST00000595523 PRXQ9BXM0 1461 aa18.62■□□□□ 0.57
SHKBP1-206ENST00000595523 CTTNBP2Q8WZ74 1663 aa18.62■□□□□ 0.57
SHKBP1-206ENST00000595523 CHIC1Q5VXU3 224 aa18.57■□□□□ 0.56
SHKBP1-206ENST00000595523 EEA1Q15075 1411 aa18.52■□□□□ 0.56
SHKBP1-206ENST00000595523 UGGT2Q9NYU1 1516 aa18.52■□□□□ 0.56
SHKBP1-206ENST00000595523 DISP1Q96F81 1524 aa18.51■□□□□ 0.55
SHKBP1-206ENST00000595523 CSRNP3Q8WYN3 585 aa18.5■□□□□ 0.55
SHKBP1-206ENST00000595523 ADCY10Q96PN6 1610 aa18.49■□□□□ 0.55
SHKBP1-206ENST00000595523 KIAA0556O60303 1618 aa18.47■□□□□ 0.55
SHKBP1-206ENST00000595523 CARMIL2Q6F5E8 1435 aa18.45■□□□□ 0.54
SHKBP1-206ENST00000595523 KIF21BO75037 1637 aa18.43■□□□□ 0.54
SHKBP1-206ENST00000595523 TNIKQ9UKE5 1360 aa18.42■□□□□ 0.54
SHKBP1-206ENST00000595523 FAM9AQ8IZU1 332 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-206ENST00000595523 PTPRGP23470 1445 aa18.4■□□□□ 0.54
SHKBP1-206ENST00000595523 KIF13AQ9H1H9 1805 aa18.39■□□□□ 0.53
SHKBP1-206ENST00000595523 TRHP20396 242 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-206ENST00000595523 SAMD9Q5K651 1589 aa18.34■□□□□ 0.53
SHKBP1-206ENST00000595523 MAPKBP1O60336 1514 aa18.34■□□□□ 0.53
SHKBP1-206ENST00000595523 GOLGA3Q08378 1498 aa18.34■□□□□ 0.53
SHKBP1-206ENST00000595523 TTBK1Q5TCY1 1321 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-206ENST00000595523 ABCC2Q92887 1545 aa18.32■□□□□ 0.52
SHKBP1-206ENST00000595523 UHRF1BP1LA0JNW5 1464 aa18.32■□□□□ 0.52
SHKBP1-206ENST00000595523 UACAQ9BZF9 1416 aa18.31■□□□□ 0.52
SHKBP1-206ENST00000595523 ABCA8O94911 1581 aa18.27■□□□□ 0.52
SHKBP1-206ENST00000595523 DIP2BQ9P265 1576 aa18.27■□□□□ 0.52
SHKBP1-206ENST00000595523 ZCCHC11Q5TAX3 1644 aaKnown RBP18.27■□□□□ 0.51
SHKBP1-206ENST00000595523 PLB1Q6P1J6 1458 aa18.26■□□□□ 0.51
SHKBP1-206ENST00000595523 KDM5BQ9UGL1 1544 aa18.25■□□□□ 0.51
SHKBP1-206ENST00000595523 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
SHKBP1-206ENST00000595523 NPM1P06748 294 aaKnown RBP eCLIP18.24■□□□□ 0.51
SHKBP1-206ENST00000595523 P3H3Q8IVL6 736 aa18.2■□□□□ 0.5
SHKBP1-206ENST00000595523 ASXL2Q76L83 1435 aa18.19■□□□□ 0.5
SHKBP1-206ENST00000595523 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
SHKBP1-206ENST00000595523 EFCAB5A4FU69 1503 aa18.18■□□□□ 0.5
SHKBP1-206ENST00000595523 FHOD3Q2V2M9 1422 aa18.16■□□□□ 0.5
SHKBP1-206ENST00000595523 TSPOAP1O95153 1857 aa18.16■□□□□ 0.5
SHKBP1-206ENST00000595523 RAPGEF6Q8TEU7 1601 aa18.16■□□□□ 0.5
SHKBP1-206ENST00000595523 RANGAP1P46060 587 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-206ENST00000595523 FAM69CQ0P6D2 419 aa18.14■□□□□ 0.49
SHKBP1-206ENST00000595523 UBTFP17480 764 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-206ENST00000595523 GLI2P10070 1586 aa18.13■□□□□ 0.49
SHKBP1-206ENST00000595523 PPRC1Q5VV67 1664 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-206ENST00000595523 ARHGAP35Q9NRY4 1499 aa18.1■□□□□ 0.49
SHKBP1-206ENST00000595523 EPRSP07814 1512 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-206ENST00000595523 MAP3K4Q9Y6R4 1608 aa18.09■□□□□ 0.49
SHKBP1-206ENST00000595523 WDR7Q9Y4E6 1490 aa18.08■□□□□ 0.49
SHKBP1-206ENST00000595523 ATP10BO94823 1461 aa18.07■□□□□ 0.48
SHKBP1-206ENST00000595523 NUP153P49790 1475 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-206ENST00000595523 ARID3CA6NKF2 412 aa18.03■□□□□ 0.48
SHKBP1-206ENST00000595523 CFAP43Q8NDM7 1665 aa18.01■□□□□ 0.47
SHKBP1-206ENST00000595523 LRRIQ1Q96JM4 1722 aa18■□□□□ 0.47
SHKBP1-206ENST00000595523 KDM6BO15054 1643 aa17.97■□□□□ 0.47
SHKBP1-206ENST00000595523 FMN1Q68DA7 1419 aa17.97■□□□□ 0.47
SHKBP1-206ENST00000595523 HECW1Q76N89 1606 aa17.96■□□□□ 0.47
SHKBP1-206ENST00000595523 CDK13Q14004 1512 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-206ENST00000595523 ABCA9Q8IUA7 1624 aa17.94■□□□□ 0.46
SHKBP1-206ENST00000595523 KCNH8Q96L42 1107 aa17.93■□□□□ 0.46
SHKBP1-206ENST00000595523 PCF11O94913 1555 aaKnown RBP17.92■□□□□ 0.46
SHKBP1-206ENST00000595523 CLIP1P30622 1438 aa17.91■□□□□ 0.46
SHKBP1-206ENST00000595523 MAGI3Q5TCQ9 1506 aa17.9■□□□□ 0.46
SHKBP1-206ENST00000595523 CD109Q6YHK3 1445 aa17.89■□□□□ 0.46
SHKBP1-206ENST00000595523 TEX14Q8IWB6 1497 aa17.89■□□□□ 0.45
SHKBP1-206ENST00000595523 COL17A1Q9UMD9 1497 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-206ENST00000595523 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-206ENST00000595523 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-206ENST00000595523 TTC37Q6PGP7 1564 aa17.85■□□□□ 0.45
SHKBP1-206ENST00000595523 CASKIN1Q8WXD9 1431 aa17.85■□□□□ 0.45
SHKBP1-206ENST00000595523 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.83■□□□□ 0.45
SHKBP1-206ENST00000595523 CEP162Q5TB80 1403 aa17.83■□□□□ 0.45
SHKBP1-206ENST00000595523 FYCO1Q9BQS8 1478 aa17.82■□□□□ 0.44
SHKBP1-206ENST00000595523 PLEKHD1A6NEE1 506 aa17.82■□□□□ 0.44
SHKBP1-206ENST00000595523 LOC105371045A0A1W2PR82 267 aa17.81■□□□□ 0.44
SHKBP1-206ENST00000595523 KIF14Q15058 1648 aa17.8■□□□□ 0.44
SHKBP1-206ENST00000595523 ATP1B4Q9UN42 357 aaPredicted RBP17.8■□□□□ 0.44
SHKBP1-206ENST00000595523 CCDC18Q5T9S5 1454 aa17.78■□□□□ 0.44
SHKBP1-206ENST00000595523 MYO5CQ9NQX4 1742 aa17.76■□□□□ 0.43
SHKBP1-206ENST00000595523 ARAP3Q8WWN8 1544 aa17.76■□□□□ 0.43
SHKBP1-206ENST00000595523 TROQ12816 1431 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-206ENST00000595523 NEO1Q92859 1461 aa17.74■□□□□ 0.43
SHKBP1-206ENST00000595523 FRMPD1Q5SYB0 1578 aa17.72■□□□□ 0.43
SHKBP1-206ENST00000595523 CFAP74Q9C0B2 1584 aa17.72■□□□□ 0.43
SHKBP1-206ENST00000595523 CDK11AQ9UQ88 783 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-206ENST00000595523 RICTORQ6R327 1708 aa17.69■□□□□ 0.42
SHKBP1-206ENST00000595523 CDC42BPBQ9Y5S2 1711 aa17.69■□□□□ 0.42
SHKBP1-206ENST00000595523 FANCAO15360 1455 aa17.69■□□□□ 0.42
SHKBP1-206ENST00000595523 PHLDB1Q86UU1 1377 aa17.69■□□□□ 0.42
SHKBP1-206ENST00000595523 CDC42BPAQ5VT25 1732 aa17.67■□□□□ 0.42
SHKBP1-206ENST00000595523 PLCH2O75038 1416 aa17.67■□□□□ 0.42
SHKBP1-206ENST00000595523 PREX2Q70Z35 1606 aa17.66■□□□□ 0.42
SHKBP1-206ENST00000595523 AKNAQ7Z591 1439 aa17.65■□□□□ 0.42
SHKBP1-206ENST00000595523 VPS8Q8N3P4 1428 aa17.62■□□□□ 0.41
SHKBP1-206ENST00000595523 RAPGEF3O95398 923 aa17.61■□□□□ 0.41
SHKBP1-206ENST00000595523 DENND4BO75064 1496 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-206ENST00000595523 ADGRL1O94910 1474 aa17.6■□□□□ 0.41
SHKBP1-206ENST00000595523 ARHGAP5Q13017 1502 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 501.3 ms