RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 NEUROD1Q13562 356 aa23.37■■□□□ 1.33
PNKP-204ENST00000594661 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
PNKP-204ENST00000594661 AQRO60306 1485 aaKnown RBP eCLIP23.34■■□□□ 1.332e-6■■■■□ 20.5
PNKP-204ENST00000594661 IFT140Q96RY7 1462 aa23.34■■□□□ 1.33
PNKP-204ENST00000594661 CTTNBP2Q8WZ74 1663 aa23.31■■□□□ 1.32
PNKP-204ENST00000594661 ZNF608Q9ULD9 1512 aaPredicted RBP23.3■■□□□ 1.32
PNKP-204ENST00000594661 GTF3C3Q9Y5Q9 886 aa23.29■■□□□ 1.32
PNKP-204ENST00000594661 APLP2Q06481 763 aa23.27■■□□□ 1.32
PNKP-204ENST00000594661 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
PNKP-204ENST00000594661 ADAMTS12P58397 1594 aa23.23■■□□□ 1.31
PNKP-204ENST00000594661 FHAD1B1AJZ9 1412 aa23.21■■□□□ 1.31
PNKP-204ENST00000594661 EIF4G3O43432 1585 aaKnown RBP23.19■■□□□ 1.3
PNKP-204ENST00000594661 EFCAB5A4FU69 1503 aa23.18■■□□□ 1.3
PNKP-204ENST00000594661 CENPBP07199 599 aaPredicted RBP23.17■■□□□ 1.3
PNKP-204ENST00000594661 P3H3Q8IVL6 736 aa23.15■■□□□ 1.3
PNKP-204ENST00000594661 FHOD3Q2V2M9 1422 aa23.14■■□□□ 1.3
PNKP-204ENST00000594661 KANK4Q5T7N3 995 aaPredicted RBP23.12■■□□□ 1.29
PNKP-204ENST00000594661 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
PNKP-204ENST00000594661 SAMD9Q5K651 1589 aa23.09■■□□□ 1.29
PNKP-204ENST00000594661 PCF11O94913 1555 aaKnown RBP23.08■■□□□ 1.29
PNKP-204ENST00000594661 TIAM1Q13009 1591 aa23.04■■□□□ 1.28
PNKP-204ENST00000594661 MAP3K1Q13233 1512 aa23.02■■□□□ 1.28
PNKP-204ENST00000594661 IQGAP2Q13576 1575 aa23.02■■□□□ 1.28
PNKP-204ENST00000594661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.01■■□□□ 1.27
PNKP-204ENST00000594661 MAGI1Q96QZ7 1491 aaPredicted RBP23■■□□□ 1.27
PNKP-204ENST00000594661 GRIN2AQ12879 1464 aa22.99■■□□□ 1.27
PNKP-204ENST00000594661 FYCO1Q9BQS8 1478 aa22.99■■□□□ 1.27
PNKP-204ENST00000594661 CASKIN1Q8WXD9 1431 aa22.98■■□□□ 1.27
PNKP-204ENST00000594661 CFAP43Q8NDM7 1665 aa22.97■■□□□ 1.27
PNKP-204ENST00000594661 FMN1Q68DA7 1419 aa22.97■■□□□ 1.27
PNKP-204ENST00000594661 CCER1Q8TC90 406 aaPredicted RBP22.96■■□□□ 1.27
PNKP-204ENST00000594661 SYNJ2O15056 1496 aa22.93■■□□□ 1.26
PNKP-204ENST00000594661 LRRC9Q6ZRR7 1453 aa22.93■■□□□ 1.26
PNKP-204ENST00000594661 ATP1B4Q9UN42 357 aaPredicted RBP22.93■■□□□ 1.26
PNKP-204ENST00000594661 KIAA0586Q9BVV6 1533 aa22.9■■□□□ 1.26
PNKP-204ENST00000594661 HNRNPUL2Q1KMD3 747 aaKnown RBP22.9■■□□□ 1.26
PNKP-204ENST00000594661 UGGT2Q9NYU1 1516 aa22.89■■□□□ 1.26
PNKP-204ENST00000594661 BCL11AQ9H165 835 aa22.88■■□□□ 1.25
PNKP-204ENST00000594661 CHMP7Q8WUX9 453 aaPredicted RBP22.88■■□□□ 1.25
PNKP-204ENST00000594661 RRBP1Q9P2E9 1410 aaKnown RBP22.87■■□□□ 1.25
PNKP-204ENST00000594661 CEP170Q5SW79 1584 aa22.86■■□□□ 1.25
PNKP-204ENST00000594661 LRRIQ1Q96JM4 1722 aa22.84■■□□□ 1.25
PNKP-204ENST00000594661 FBLN2P98095 1184 aa22.83■■□□□ 1.25
PNKP-204ENST00000594661 DISP1Q96F81 1524 aa22.8■■□□□ 1.24
PNKP-204ENST00000594661 KIAA0556O60303 1618 aa22.79■■□□□ 1.24
PNKP-204ENST00000594661 NUP160Q12769 1436 aa22.79■■□□□ 1.24
PNKP-204ENST00000594661 CCNB3Q8WWL7 1395 aa22.78■■□□□ 1.24
PNKP-204ENST00000594661 PHLDB1Q86UU1 1377 aa22.78■■□□□ 1.24
PNKP-204ENST00000594661 DIEXFQ68CQ4 756 aaKnown RBP22.76■■□□□ 1.23
PNKP-204ENST00000594661 HECW1Q76N89 1606 aa22.73■■□□□ 1.23
PNKP-204ENST00000594661 MTUS2Q5JR59 1369 aa22.69■■□□□ 1.22
PNKP-204ENST00000594661 CCDC18Q5T9S5 1454 aa22.69■■□□□ 1.22
PNKP-204ENST00000594661 EPRSP07814 1512 aaKnown RBP22.66■■□□□ 1.22
PNKP-204ENST00000594661 MAGI3Q5TCQ9 1506 aa22.65■■□□□ 1.22
PNKP-204ENST00000594661 CHD1O14646 1710 aa22.65■■□□□ 1.22
PNKP-204ENST00000594661 EHBP1L1Q8N3D4 1523 aa22.64■■□□□ 1.21
PNKP-204ENST00000594661 JPH4Q96JJ6 628 aa22.64■■□□□ 1.21
PNKP-204ENST00000594661 CDK13Q14004 1512 aaKnown RBP22.63■■□□□ 1.21
PNKP-204ENST00000594661 ITGAEP38570 1179 aa22.61■■□□□ 1.21
PNKP-204ENST00000594661 NCOA2Q15596 1464 aa22.6■■□□□ 1.21
PNKP-204ENST00000594661 RAPGEF6Q8TEU7 1601 aa22.6■■□□□ 1.21
PNKP-204ENST00000594661 SUPT6HQ7KZ85 1726 aaKnown RBP22.59■■□□□ 1.21
PNKP-204ENST00000594661 CARMIL2Q6F5E8 1435 aa22.58■■□□□ 1.21
PNKP-204ENST00000594661 ARID3CA6NKF2 412 aa22.58■■□□□ 1.2
PNKP-204ENST00000594661 NUP153P49790 1475 aaKnown RBP22.58■■□□□ 1.2
PNKP-204ENST00000594661 FAM50AQ14320 339 aaKnown RBP22.57■■□□□ 1.2
PNKP-204ENST00000594661 ANP32EQ9BTT0 268 aa22.57■■□□□ 1.2
PNKP-204ENST00000594661 FGD6Q6ZV73 1430 aa22.56■■□□□ 1.2
PNKP-204ENST00000594661 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
PNKP-204ENST00000594661 PLB1Q6P1J6 1458 aa22.53■■□□□ 1.2
PNKP-204ENST00000594661 MYOM3Q5VTT5 1437 aa22.52■■□□□ 1.19
PNKP-204ENST00000594661 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.5■■□□□ 1.19
PNKP-204ENST00000594661 PRG4Q92954 1404 aaPredicted RBP22.48■■□□□ 1.19
PNKP-204ENST00000594661 DHX57Q6P158 1386 aaKnown RBP22.45■■□□□ 1.19
PNKP-204ENST00000594661 SHROOM2Q13796 1616 aa22.44■■□□□ 1.18
PNKP-204ENST00000594661 ABCA8O94911 1581 aa22.44■■□□□ 1.18
PNKP-204ENST00000594661 PRKCSHP14314 528 aaPredicted RBP22.42■■□□□ 1.18
PNKP-204ENST00000594661 RAB3GAP2Q9H2M9 1393 aa22.42■■□□□ 1.18
PNKP-204ENST00000594661 PTPN23Q9H3S7 1636 aa22.42■■□□□ 1.18
PNKP-204ENST00000594661 SETD5Q9C0A6 1442 aa22.4■■□□□ 1.18
PNKP-204ENST00000594661 PTPRKQ15262 1439 aa22.36■■□□□ 1.17
PNKP-204ENST00000594661 CDK11AQ9UQ88 783 aaPredicted RBP22.36■■□□□ 1.17
PNKP-204ENST00000594661 TCOF1Q13428 1488 aaKnown RBP22.36■■□□□ 1.17
PNKP-204ENST00000594661 PTPRGP23470 1445 aa22.35■■□□□ 1.17
PNKP-204ENST00000594661 CLASP1Q7Z460 1538 aa22.35■■□□□ 1.17
PNKP-204ENST00000594661 ERCC6L2Q5T890 1561 aa22.35■■□□□ 1.17
PNKP-204ENST00000594661 TROQ12816 1431 aaPredicted RBP22.34■■□□□ 1.17
PNKP-204ENST00000594661 MIA2Q96PC5 1412 aa22.33■■□□□ 1.16
PNKP-204ENST00000594661 CLSPNQ9HAW4 1339 aa22.31■■□□□ 1.16
PNKP-204ENST00000594661 ATP10BO94823 1461 aa22.31■■□□□ 1.16
PNKP-204ENST00000594661 KIF14Q15058 1648 aa22.29■■□□□ 1.16
PNKP-204ENST00000594661 ADCY10Q96PN6 1610 aa22.29■■□□□ 1.16
PNKP-204ENST00000594661 HFM1A2PYH4 1435 aa22.25■■□□□ 1.15
PNKP-204ENST00000594661 ZNF316A6NFI3 1004 aaPredicted RBP22.24■■□□□ 1.15
PNKP-204ENST00000594661 YTHDC1Q96MU7 727 aaKnown RBP22.24■■□□□ 1.15
PNKP-204ENST00000594661 UACAQ9BZF9 1416 aa22.24■■□□□ 1.15
PNKP-204ENST00000594661 MAPKBP1O60336 1514 aa22.23■■□□□ 1.15
PNKP-204ENST00000594661 NAIPQ13075 1403 aa22.21■■□□□ 1.15
PNKP-204ENST00000594661 PLEKHD1A6NEE1 506 aa22.2■■□□□ 1.14
PNKP-204ENST00000594661 ITSN2Q9NZM3 1697 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms