RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 FOXD4L1Q9NU39 408 aa17.43■□□□□ 0.38
VRK3-208ENST00000594104 FOXD1Q16676 465 aa17.41■□□□□ 0.38
VRK3-208ENST00000594104 CLSPNQ9HAW4 1339 aa17.41■□□□□ 0.38
VRK3-208ENST00000594104 DAXXQ9UER7 740 aaPredicted RBP17.4■□□□□ 0.38
VRK3-208ENST00000594104 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
VRK3-208ENST00000594104 RRBP1Q9P2E9 1410 aaKnown RBP17.4■□□□□ 0.38
VRK3-208ENST00000594104 TAOK2Q9UL54 1235 aa17.39■□□□□ 0.37
VRK3-208ENST00000594104 POLA1P09884 1462 aaPredicted RBP17.39■□□□□ 0.37
VRK3-208ENST00000594104 PLCB2Q00722 1185 aa17.38■□□□□ 0.37
VRK3-208ENST00000594104 PDS5BQ9NTI5 1447 aa17.37■□□□□ 0.37
VRK3-208ENST00000594104 BCANQ96GW7 911 aa17.36■□□□□ 0.37
VRK3-208ENST00000594104 FHAD1B1AJZ9 1412 aa17.36■□□□□ 0.37
VRK3-208ENST00000594104 CUL7Q14999 1698 aa17.35■□□□□ 0.37
VRK3-208ENST00000594104 KANK4Q5T7N3 995 aaPredicted RBP17.35■□□□□ 0.37
VRK3-208ENST00000594104 NESP48681 1621 aa17.34■□□□□ 0.37
VRK3-208ENST00000594104 RAD54L2Q9Y4B4 1467 aa17.31■□□□□ 0.36
VRK3-208ENST00000594104 EFCAB5A4FU69 1503 aa17.31■□□□□ 0.36
VRK3-208ENST00000594104 URB2Q14146 1524 aaKnown RBP17.29■□□□□ 0.36
VRK3-208ENST00000594104 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
VRK3-208ENST00000594104 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
VRK3-208ENST00000594104 ZNF316A6NFI3 1004 aaPredicted RBP17.27■□□□□ 0.36
VRK3-208ENST00000594104 AQRO60306 1485 aaKnown RBP eCLIP17.27■□□□□ 0.36
VRK3-208ENST00000594104 DIEXFQ68CQ4 756 aaKnown RBP17.26■□□□□ 0.35
VRK3-208ENST00000594104 WDR97A6NE52 1622 aa17.25■□□□□ 0.35
VRK3-208ENST00000594104 LRRC9Q6ZRR7 1453 aa17.22■□□□□ 0.35
VRK3-208ENST00000594104 ABCA5Q8WWZ7 1642 aa17.21■□□□□ 0.35
VRK3-208ENST00000594104 FYCO1Q9BQS8 1478 aa17.21■□□□□ 0.35
VRK3-208ENST00000594104 CASKIN1Q8WXD9 1431 aa17.2■□□□□ 0.34
VRK3-208ENST00000594104 HAP1P54257 671 aaPredicted RBP17.19■□□□□ 0.34
VRK3-208ENST00000594104 GAPVD1Q14C86 1478 aa17.19■□□□□ 0.34
VRK3-208ENST00000594104 DHX57Q6P158 1386 aaKnown RBP17.19■□□□□ 0.34
VRK3-208ENST00000594104 FMN1Q68DA7 1419 aa17.17■□□□□ 0.34
VRK3-208ENST00000594104 CFAP43Q8NDM7 1665 aa17.17■□□□□ 0.34
VRK3-208ENST00000594104 CTTNBP2Q8WZ74 1663 aa17.17■□□□□ 0.34
VRK3-208ENST00000594104 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.16■□□□□ 0.34
VRK3-208ENST00000594104 PCF11O94913 1555 aaKnown RBP17.13■□□□□ 0.33
VRK3-208ENST00000594104 TDRD9Q8NDG6 1382 aaKnown RBP17.12■□□□□ 0.33
VRK3-208ENST00000594104 TPRNQ4KMQ1 711 aa17.12■□□□□ 0.33
VRK3-208ENST00000594104 TARBP1Q13395 1621 aaKnown RBP17.11■□□□□ 0.33
VRK3-208ENST00000594104 FHOD3Q2V2M9 1422 aa17.1■□□□□ 0.33
VRK3-208ENST00000594104 KIF21AQ7Z4S6 1674 aa17.09■□□□□ 0.33
VRK3-208ENST00000594104 SAMD9Q5K651 1589 aa17.08■□□□□ 0.33
VRK3-208ENST00000594104 PHLDB1Q86UU1 1377 aa17.07■□□□□ 0.32
VRK3-208ENST00000594104 MRC2Q9UBG0 1479 aa17.07■□□□□ 0.32
VRK3-208ENST00000594104 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
VRK3-208ENST00000594104 SETD5Q9C0A6 1442 aa17.06■□□□□ 0.32
VRK3-208ENST00000594104 P3H3Q8IVL6 736 aa17.05■□□□□ 0.32
VRK3-208ENST00000594104 TIMELESSQ9UNS1 1208 aa17.05■□□□□ 0.32
VRK3-208ENST00000594104 SNAPC4Q5SXM2 1469 aa17.04■□□□□ 0.32
VRK3-208ENST00000594104 CENPBP07199 599 aaPredicted RBP17.04■□□□□ 0.32
VRK3-208ENST00000594104 DNAJC5BQ9UF47 199 aa17.03■□□□□ 0.32
VRK3-208ENST00000594104 RAB3GAP2Q9H2M9 1393 aa17.02■□□□□ 0.32
VRK3-208ENST00000594104 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
VRK3-208ENST00000594104 CNKSR2Q8WXI2 1034 aa16.99■□□□□ 0.31
VRK3-208ENST00000594104 IFT140Q96RY7 1462 aa16.98■□□□□ 0.31
VRK3-208ENST00000594104 ACIN1Q9UKV3 1341 aaKnown RBP16.98■□□□□ 0.31
VRK3-208ENST00000594104 ATP1B4Q9UN42 357 aaPredicted RBP16.98■□□□□ 0.31
VRK3-208ENST00000594104 MTUS2Q5JR59 1369 aa16.95■□□□□ 0.3
VRK3-208ENST00000594104 FAM50AQ14320 339 aaKnown RBP16.95■□□□□ 0.3
VRK3-208ENST00000594104 ARXQ96QS3 562 aa16.95■□□□□ 0.3
VRK3-208ENST00000594104 CCDC18Q5T9S5 1454 aa16.95■□□□□ 0.3
VRK3-208ENST00000594104 PBRM1Q86U86 1689 aa16.95■□□□□ 0.3
VRK3-208ENST00000594104 ITGAEP38570 1179 aa16.95■□□□□ 0.3
VRK3-208ENST00000594104 FGD6Q6ZV73 1430 aa16.95■□□□□ 0.3
VRK3-208ENST00000594104 ADAMTS12P58397 1594 aa16.94■□□□□ 0.3
VRK3-208ENST00000594104 WDR62O43379 1518 aa16.93■□□□□ 0.3
VRK3-208ENST00000594104 EHBP1L1Q8N3D4 1523 aa16.91■□□□□ 0.3
VRK3-208ENST00000594104 SCAF1Q9H7N4 1312 aaKnown RBP16.91■□□□□ 0.3
VRK3-208ENST00000594104 IQGAP2Q13576 1575 aa16.91■□□□□ 0.3
VRK3-208ENST00000594104 MAPKBP1O60336 1514 aa16.9■□□□□ 0.3
VRK3-208ENST00000594104 TULP1O00294 542 aaPredicted RBP16.89■□□□□ 0.3
VRK3-208ENST00000594104 UGGT2Q9NYU1 1516 aa16.89■□□□□ 0.29
VRK3-208ENST00000594104 MYOM3Q5VTT5 1437 aa16.88■□□□□ 0.29
VRK3-208ENST00000594104 NCOA2Q15596 1464 aa16.87■□□□□ 0.29
VRK3-208ENST00000594104 ARHGEF11O15085 1522 aa16.86■□□□□ 0.29
VRK3-208ENST00000594104 SUPT6HQ7KZ85 1726 aaKnown RBP16.86■□□□□ 0.29
VRK3-208ENST00000594104 NEUROD1Q13562 356 aa16.85■□□□□ 0.29
VRK3-208ENST00000594104 HECW1Q76N89 1606 aa16.85■□□□□ 0.29
VRK3-208ENST00000594104 MIER1Q8N108 512 aa16.85■□□□□ 0.29
VRK3-208ENST00000594104 KIAA0586Q9BVV6 1533 aa16.85■□□□□ 0.29
VRK3-208ENST00000594104 PIAS4Q8N2W9 510 aaPredicted RBP16.84■□□□□ 0.29
VRK3-208ENST00000594104 HFM1A2PYH4 1435 aa16.84■□□□□ 0.29
VRK3-208ENST00000594104 VSIG10Q8N0Z9 540 aa16.84■□□□□ 0.29
VRK3-208ENST00000594104 TCOF1Q13428 1488 aaKnown RBP16.81■□□□□ 0.28
VRK3-208ENST00000594104 LRRIQ1Q96JM4 1722 aa16.81■□□□□ 0.28
VRK3-208ENST00000594104 EPRSP07814 1512 aaKnown RBP16.79■□□□□ 0.28
VRK3-208ENST00000594104 MIA2Q96PC5 1412 aa16.79■□□□□ 0.28
VRK3-208ENST00000594104 ZNF608Q9ULD9 1512 aaPredicted RBP16.78■□□□□ 0.28
VRK3-208ENST00000594104 MAGI1Q96QZ7 1491 aaPredicted RBP16.77■□□□□ 0.28
VRK3-208ENST00000594104 AKNAQ7Z591 1439 aa16.77■□□□□ 0.27
VRK3-208ENST00000594104 UACAQ9BZF9 1416 aa16.77■□□□□ 0.27
VRK3-208ENST00000594104 PTPN23Q9H3S7 1636 aa16.76■□□□□ 0.27
VRK3-208ENST00000594104 GRIN2AQ12879 1464 aa16.75■□□□□ 0.27
VRK3-208ENST00000594104 NAIPQ13075 1403 aa16.74■□□□□ 0.27
VRK3-208ENST00000594104 PTPRKQ15262 1439 aa16.74■□□□□ 0.27
VRK3-208ENST00000594104 MAGI3Q5TCQ9 1506 aa16.73■□□□□ 0.27
VRK3-208ENST00000594104 ERCC6Q03468 1493 aa16.73■□□□□ 0.27
VRK3-208ENST00000594104 EIF4G3O43432 1585 aaKnown RBP16.71■□□□□ 0.27
VRK3-208ENST00000594104 DISP1Q96F81 1524 aa16.71■□□□□ 0.27
VRK3-208ENST00000594104 KIAA0556O60303 1618 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms