RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 IGF1RP08069 1367 aa41.91■■■■■ 4.3
LSM4-202ENST00000593564 CUL7Q14999 1698 aa41.8■■■■■ 4.28
LSM4-202ENST00000593564 KIAA0586Q9BVV6 1533 aa41.78■■■■■ 4.28
LSM4-202ENST00000593564 CARMIL1Q5VZK9 1371 aa41.63■■■■■ 4.25
LSM4-202ENST00000593564 KIF13AQ9H1H9 1805 aa41.58■■■■■ 4.25
LSM4-202ENST00000593564 NPM1P06748 294 aaKnown RBP eCLIP41.56■■■■■ 4.24
LSM4-202ENST00000593564 ADCY10Q96PN6 1610 aa41.53■■■■■ 4.24
LSM4-202ENST00000593564 MAPKBP1O60336 1514 aa41.52■■■■■ 4.24
LSM4-202ENST00000593564 ABCC10Q5T3U5 1492 aa41.48■■■■■ 4.23
LSM4-202ENST00000593564 FAM69CQ0P6D2 419 aa41.42■■■■■ 4.22
LSM4-202ENST00000593564 PTPRGP23470 1445 aa41.38■■■■■ 4.22
LSM4-202ENST00000593564 AEBP2Q6ZN18 517 aaPredicted RBP41.37■■■■■ 4.21
LSM4-202ENST00000593564 CARMIL2Q6F5E8 1435 aa41.35■■■■■ 4.21
LSM4-202ENST00000593564 IQGAP2Q13576 1575 aa41.35■■■■■ 4.21
LSM4-202ENST00000593564 DIP2BQ9P265 1576 aa41.35■■■■■ 4.21
LSM4-202ENST00000593564 TNIKQ9UKE5 1360 aa41.32■■■■■ 4.21
LSM4-202ENST00000593564 RAPGEF2Q9Y4G8 1499 aa41.25■■■■■ 4.19
LSM4-202ENST00000593564 TTBK1Q5TCY1 1321 aaPredicted RBP41.2■■■■■ 4.19
LSM4-202ENST00000593564 ABCC2Q92887 1545 aa41.18■■■■■ 4.18
LSM4-202ENST00000593564 DISP1Q96F81 1524 aa41.17■■■■■ 4.18
LSM4-202ENST00000593564 UHRF1BP1LA0JNW5 1464 aa41.11■■■■■ 4.17
LSM4-202ENST00000593564 UGGT2Q9NYU1 1516 aa41.11■■■■■ 4.17
LSM4-202ENST00000593564 UACAQ9BZF9 1416 aa41.07■■■■■ 4.16
LSM4-202ENST00000593564 PLB1Q6P1J6 1458 aa41.02■■■■■ 4.16
LSM4-202ENST00000593564 ASXL2Q76L83 1435 aa41.01■■■■■ 4.16
LSM4-202ENST00000593564 TSPOAP1O95153 1857 aa40.98■■■■■ 4.15
LSM4-202ENST00000593564 KDM6BO15054 1643 aa40.97■■■■■ 4.15
LSM4-202ENST00000593564 KIAA0556O60303 1618 aa40.97■■■■■ 4.15
LSM4-202ENST00000593564 KDM5BQ9UGL1 1544 aa40.93■■■■■ 4.14
LSM4-202ENST00000593564 GLI2P10070 1586 aa40.92■■■■■ 4.14
LSM4-202ENST00000593564 CTTNBP2Q8WZ74 1663 aa40.85■■■■■ 4.13
LSM4-202ENST00000593564 PRXQ9BXM0 1461 aa40.83■■■■■ 4.13
LSM4-202ENST00000593564 GOLGA3Q08378 1498 aa40.78■■■■■ 4.12
LSM4-202ENST00000593564 ZCCHC11Q5TAX3 1644 aaKnown RBP40.78■■■■■ 4.12
LSM4-202ENST00000593564 EPRSP07814 1512 aaKnown RBP40.77■■■■■ 4.12
LSM4-202ENST00000593564 PPRC1Q5VV67 1664 aaKnown RBP40.77■■■■■ 4.12
LSM4-202ENST00000593564 MAP3K4Q9Y6R4 1608 aa40.66■■■■■ 4.1
LSM4-202ENST00000593564 WDR7Q9Y4E6 1490 aa40.63■■■■■ 4.09
LSM4-202ENST00000593564 ABCA8O94911 1581 aa40.61■■■■■ 4.09
LSM4-202ENST00000593564 KDM4FA0A1W2PPD8 638 aa40.6■■■■■ 4.09
LSM4-202ENST00000593564 TEX14Q8IWB6 1497 aa40.59■■■■■ 4.09
LSM4-202ENST00000593564 COL17A1Q9UMD9 1497 aaPredicted RBP40.53■■■■■ 4.08
LSM4-202ENST00000593564 CSRNP3Q8WYN3 585 aa40.49■■■■■ 4.07
LSM4-202ENST00000593564 FAM9AQ8IZU1 332 aaPredicted RBP40.39■■■■■ 4.06
LSM4-202ENST00000593564 CD109Q6YHK3 1445 aa40.37■■■■■ 4.05
LSM4-202ENST00000593564 KCNH8Q96L42 1107 aa40.37■■■■■ 4.05
LSM4-202ENST00000593564 MAGI3Q5TCQ9 1506 aa40.37■■■■■ 4.05
LSM4-202ENST00000593564 P3H3Q8IVL6 736 aa40.36■■■■■ 4.05
LSM4-202ENST00000593564 EEA1Q15075 1411 aa40.35■■■■■ 4.05
LSM4-202ENST00000593564 CFAP43Q8NDM7 1665 aa40.35■■■■■ 4.05
LSM4-202ENST00000593564 SAMD9Q5K651 1589 aa40.31■■■■■ 4.04
LSM4-202ENST00000593564 ATP10BO94823 1461 aa40.27■■■■■ 4.04
LSM4-202ENST00000593564 ADGRL1O94910 1474 aa40.27■■■■■ 4.04
LSM4-202ENST00000593564 ARID3CA6NKF2 412 aa40.23■■■■■ 4.03
LSM4-202ENST00000593564 RAPGEF6Q8TEU7 1601 aa40.15■■■■■ 4.02
LSM4-202ENST00000593564 ABCA9Q8IUA7 1624 aa40.06■■■■■ 4
LSM4-202ENST00000593564 ARAP3Q8WWN8 1544 aa40.06■■■■■ 4
LSM4-202ENST00000593564 FHOD3Q2V2M9 1422 aa40.05■■■■■ 4
LSM4-202ENST00000593564 NUP153P49790 1475 aaKnown RBP40.04■■■■■ 4
LSM4-202ENST00000593564 RANGAP1P46060 587 aaPredicted RBP40.03■■■■■ 4
LSM4-202ENST00000593564 KIF21BO75037 1637 aa40.01■■■■■ 4
LSM4-202ENST00000593564 PHLDB1Q86UU1 1377 aa39.99■■■■□ 3.99
LSM4-202ENST00000593564 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.98■■■■□ 3.99
LSM4-202ENST00000593564 HNRNPUL2Q1KMD3 747 aaKnown RBP39.98■■■■□ 3.99
LSM4-202ENST00000593564 EFCAB5A4FU69 1503 aa39.94■■■■□ 3.98
LSM4-202ENST00000593564 NEO1Q92859 1461 aa39.89■■■■□ 3.98
LSM4-202ENST00000593564 PLEKHD1A6NEE1 506 aa39.81■■■■□ 3.96
LSM4-202ENST00000593564 RAPGEF3O95398 923 aa39.77■■■■□ 3.96
LSM4-202ENST00000593564 CHIC1Q5VXU3 224 aa39.71■■■■□ 3.95
LSM4-202ENST00000593564 HECW2Q9P2P5 1572 aa39.71■■■■□ 3.95
LSM4-202ENST00000593564 FRMPD1Q5SYB0 1578 aa39.69■■■■□ 3.94
LSM4-202ENST00000593564 UBTFP17480 764 aaKnown RBP39.68■■■■□ 3.94
LSM4-202ENST00000593564 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.65■■■■□ 3.945e-7■■■□□ 17.3
LSM4-202ENST00000593564 EHMT2Q96KQ7 1210 aa39.62■■■■□ 3.93
LSM4-202ENST00000593564 CDK13Q14004 1512 aaKnown RBP39.61■■■■□ 3.93
LSM4-202ENST00000593564 AKNAQ7Z591 1439 aa39.6■■■■□ 3.93
LSM4-202ENST00000593564 FANCAO15360 1455 aa39.6■■■■□ 3.93
LSM4-202ENST00000593564 FMN1Q68DA7 1419 aa39.59■■■■□ 3.93
LSM4-202ENST00000593564 DENND4BO75064 1496 aaPredicted RBP39.59■■■■□ 3.93
LSM4-202ENST00000593564 TTC37Q6PGP7 1564 aa39.59■■■■□ 3.93
LSM4-202ENST00000593564 CFAP74Q9C0B2 1584 aa39.58■■■■□ 3.93
LSM4-202ENST00000593564 ARHGAP35Q9NRY4 1499 aa39.56■■■■□ 3.92
LSM4-202ENST00000593564 ADAMTSL3P82987 1691 aa39.54■■■■□ 3.92
LSM4-202ENST00000593564 RICTORQ6R327 1708 aa39.51■■■■□ 3.92
LSM4-202ENST00000593564 ARHGEF40Q8TER5 1519 aa39.5■■■■□ 3.91
LSM4-202ENST00000593564 HECW1Q76N89 1606 aa39.5■■■■□ 3.91
LSM4-202ENST00000593564 PTPRMP28827 1452 aa39.48■■■■□ 3.91
LSM4-202ENST00000593564 BCORL1Q5H9F3 1711 aa39.45■■■■□ 3.91
LSM4-202ENST00000593564 ARID4BQ4LE39 1312 aaPredicted RBP39.45■■■■□ 3.91
LSM4-202ENST00000593564 ATP1B4Q9UN42 357 aaPredicted RBP39.44■■■■□ 3.9
LSM4-202ENST00000593564 PLCH2O75038 1416 aa39.43■■■■□ 3.9
LSM4-202ENST00000593564 ZMYM4Q5VZL5 1548 aa39.42■■■■□ 3.9
LSM4-202ENST00000593564 CDK11AQ9UQ88 783 aaPredicted RBP39.4■■■■□ 3.9
LSM4-202ENST00000593564 ILDR1Q86SU0 546 aaPredicted RBP39.35■■■■□ 3.89
LSM4-202ENST00000593564 MADDQ8WXG6 1647 aa39.35■■■■□ 3.89
LSM4-202ENST00000593564 MAGI2Q86UL8 1455 aa39.34■■■■□ 3.89
LSM4-202ENST00000593564 ZFYVE16Q7Z3T8 1539 aa39.33■■■■□ 3.89
LSM4-202ENST00000593564 POGZQ7Z3K3 1410 aa39.31■■■■□ 3.88
LSM4-202ENST00000593564 SCAPERQ9BY12 1400 aa39.31■■■■□ 3.88
LSM4-202ENST00000593564 YEATS2Q9ULM3 1422 aa39.31■■■■□ 3.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms