RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 FAM9AQ8IZU1 332 aaPredicted RBP22.09■■□□□ 1.13
VMP1-217ENST00000593168 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
VMP1-217ENST00000593168 RUSC2Q8N2Y8 1516 aa22.03■■□□□ 1.12
VMP1-217ENST00000593168 CSRNP3Q8WYN3 585 aa22■■□□□ 1.11
VMP1-217ENST00000593168 JPH4Q96JJ6 628 aa21.99■■□□□ 1.11
VMP1-217ENST00000593168 KIF27Q86VH2 1401 aa21.98■■□□□ 1.11
VMP1-217ENST00000593168 ABCC10Q5T3U5 1492 aa21.92■■□□□ 1.1
VMP1-217ENST00000593168 LOC105371045A0A1W2PR82 267 aa21.92■■□□□ 1.1
VMP1-217ENST00000593168 ADCY10Q96PN6 1610 aa21.91■■□□□ 1.1
VMP1-217ENST00000593168 DIP2BQ9P265 1576 aa21.9■■□□□ 1.1
VMP1-217ENST00000593168 MAPKBP1O60336 1514 aa21.9■■□□□ 1.1
VMP1-217ENST00000593168 FAM69CQ0P6D2 419 aa21.89■■□□□ 1.09
VMP1-217ENST00000593168 NPM1P06748 294 aaKnown RBP eCLIP21.85■■□□□ 1.09
VMP1-217ENST00000593168 IGF1RP08069 1367 aa21.81■■□□□ 1.08
VMP1-217ENST00000593168 KIAA0586Q9BVV6 1533 aa21.8■■□□□ 1.08
VMP1-217ENST00000593168 TSPOAP1O95153 1857 aa21.8■■□□□ 1.08
VMP1-217ENST00000593168 KIF21BO75037 1637 aa21.8■■□□□ 1.08
VMP1-217ENST00000593168 KDM6BO15054 1643 aa21.78■■□□□ 1.08
VMP1-217ENST00000593168 PRXQ9BXM0 1461 aa21.77■■□□□ 1.08
VMP1-217ENST00000593168 CUL7Q14999 1698 aa21.77■■□□□ 1.08
VMP1-217ENST00000593168 GOLGA3Q08378 1498 aa21.75■■□□□ 1.07
VMP1-217ENST00000593168 KDM4FA0A1W2PPD8 638 aa21.7■■□□□ 1.06
VMP1-217ENST00000593168 EHMT2Q96KQ7 1210 aa21.7■■□□□ 1.06
VMP1-217ENST00000593168 CARMIL1Q5VZK9 1371 aa21.69■■□□□ 1.06
VMP1-217ENST00000593168 RAPGEF2Q9Y4G8 1499 aa21.68■■□□□ 1.06
VMP1-217ENST00000593168 TNIKQ9UKE5 1360 aa21.67■■□□□ 1.06
VMP1-217ENST00000593168 PTPRGP23470 1445 aa21.65■■□□□ 1.06
VMP1-217ENST00000593168 UBTFP17480 764 aaKnown RBP21.65■■□□□ 1.06
VMP1-217ENST00000593168 TTBK1Q5TCY1 1321 aaPredicted RBP21.63■■□□□ 1.05
VMP1-217ENST00000593168 PPRC1Q5VV67 1664 aaKnown RBP21.62■■□□□ 1.05
VMP1-217ENST00000593168 ABCC2Q92887 1545 aa21.6■■□□□ 1.05
VMP1-217ENST00000593168 IQGAP2Q13576 1575 aa21.57■■□□□ 1.04
VMP1-217ENST00000593168 CARMIL2Q6F5E8 1435 aa21.57■■□□□ 1.04
VMP1-217ENST00000593168 GLI2P10070 1586 aa21.57■■□□□ 1.04
VMP1-217ENST00000593168 ASXL2Q76L83 1435 aa21.56■■□□□ 1.04
VMP1-217ENST00000593168 PLB1Q6P1J6 1458 aa21.54■■□□□ 1.04
VMP1-217ENST00000593168 UHRF1BP1LA0JNW5 1464 aa21.52■■□□□ 1.04
VMP1-217ENST00000593168 DISP1Q96F81 1524 aa21.5■■□□□ 1.03
VMP1-217ENST00000593168 CEP162Q5TB80 1403 aa21.48■■□□□ 1.03
VMP1-217ENST00000593168 UACAQ9BZF9 1416 aa21.48■■□□□ 1.03
VMP1-217ENST00000593168 MAP3K4Q9Y6R4 1608 aa21.47■■□□□ 1.03
VMP1-217ENST00000593168 ADGRL1O94910 1474 aa21.45■■□□□ 1.03
VMP1-217ENST00000593168 COL17A1Q9UMD9 1497 aaPredicted RBP21.45■■□□□ 1.02
VMP1-217ENST00000593168 EPRSP07814 1512 aaKnown RBP21.45■■□□□ 1.02
VMP1-217ENST00000593168 KDM5BQ9UGL1 1544 aa21.45■■□□□ 1.02
VMP1-217ENST00000593168 ZCCHC11Q5TAX3 1644 aaKnown RBP21.44■■□□□ 1.02
VMP1-217ENST00000593168 UGGT2Q9NYU1 1516 aa21.41■■□□□ 1.02
VMP1-217ENST00000593168 KIAA0556O60303 1618 aa21.4■■□□□ 1.02
VMP1-217ENST00000593168 CLIP1P30622 1438 aa21.38■■□□□ 1.01
VMP1-217ENST00000593168 ILDR1Q86SU0 546 aaPredicted RBP21.37■■□□□ 1.01
VMP1-217ENST00000593168 TEX14Q8IWB6 1497 aa21.35■■□□□ 1.01
VMP1-217ENST00000593168 CTTNBP2Q8WZ74 1663 aa21.32■■□□□ 1
VMP1-217ENST00000593168 WDR7Q9Y4E6 1490 aa21.29■■□□□ 1
VMP1-217ENST00000593168 HECW2Q9P2P5 1572 aa21.28■■□□□ 1
VMP1-217ENST00000593168 RANGAP1P46060 587 aaPredicted RBP21.27■■□□□ 1
VMP1-217ENST00000593168 CFAP43Q8NDM7 1665 aa21.24■□□□□ 0.99
VMP1-217ENST00000593168 ARHGAP35Q9NRY4 1499 aa21.24■□□□□ 0.99
VMP1-217ENST00000593168 ABCA8O94911 1581 aa21.23■□□□□ 0.99
VMP1-217ENST00000593168 EFCAB5A4FU69 1503 aa21.2■□□□□ 0.98
VMP1-217ENST00000593168 MAGI3Q5TCQ9 1506 aa21.2■□□□□ 0.98
VMP1-217ENST00000593168 CD109Q6YHK3 1445 aa21.2■□□□□ 0.98
VMP1-217ENST00000593168 VPS8Q8N3P4 1428 aa21.18■□□□□ 0.98
VMP1-217ENST00000593168 KCNH8Q96L42 1107 aa21.16■□□□□ 0.98
VMP1-217ENST00000593168 SAMD9Q5K651 1589 aa21.13■□□□□ 0.97
VMP1-217ENST00000593168 P3H3Q8IVL6 736 aa21.07■□□□□ 0.96
VMP1-217ENST00000593168 FHOD3Q2V2M9 1422 aa21.05■□□□□ 0.96
VMP1-217ENST00000593168 ARAP3Q8WWN8 1544 aa21.05■□□□□ 0.96
VMP1-217ENST00000593168 ARID3CA6NKF2 412 aa21.03■□□□□ 0.96
VMP1-217ENST00000593168 ATP10BO94823 1461 aa21.02■□□□□ 0.96
VMP1-217ENST00000593168 FMN1Q68DA7 1419 aa21.02■□□□□ 0.96
VMP1-217ENST00000593168 ABCA9Q8IUA7 1624 aa21.01■□□□□ 0.95
VMP1-217ENST00000593168 APLP2Q06481 763 aa20.98■□□□□ 0.95
VMP1-217ENST00000593168 ADAMTSL3P82987 1691 aa20.98■□□□□ 0.95
VMP1-217ENST00000593168 CASKIN1Q8WXD9 1431 aa20.95■□□□□ 0.94
VMP1-217ENST00000593168 RAPGEF6Q8TEU7 1601 aa20.94■□□□□ 0.94
VMP1-217ENST00000593168 PTPRMP28827 1452 aa20.93■□□□□ 0.94
VMP1-217ENST00000593168 FRMPD1Q5SYB0 1578 aa20.92■□□□□ 0.94
VMP1-217ENST00000593168 RAPGEF3O95398 923 aa20.91■□□□□ 0.94
VMP1-217ENST00000593168 PHLDB1Q86UU1 1377 aa20.91■□□□□ 0.94
VMP1-217ENST00000593168 FYCO1Q9BQS8 1478 aa20.91■□□□□ 0.94
VMP1-217ENST00000593168 BCORL1Q5H9F3 1711 aa20.9■□□□□ 0.94
VMP1-217ENST00000593168 PCF11O94913 1555 aaKnown RBP20.89■□□□□ 0.94
VMP1-217ENST00000593168 MAP3K1Q13233 1512 aa20.89■□□□□ 0.94
VMP1-217ENST00000593168 NEO1Q92859 1461 aa20.89■□□□□ 0.94
VMP1-217ENST00000593168 MADDQ8WXG6 1647 aa20.87■□□□□ 0.93
VMP1-217ENST00000593168 PPARGC1BQ86YN6 1023 aaKnown RBP20.85■□□□□ 0.93
VMP1-217ENST00000593168 NUP153P49790 1475 aaKnown RBP20.84■□□□□ 0.93
VMP1-217ENST00000593168 FBXO41Q8TF61 875 aa20.84■□□□□ 0.93
VMP1-217ENST00000593168 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.82■□□□□ 0.92
VMP1-217ENST00000593168 HNRNPUL2Q1KMD3 747 aaKnown RBP20.82■□□□□ 0.92
VMP1-217ENST00000593168 ATP1B4Q9UN42 357 aaPredicted RBP20.82■□□□□ 0.92
VMP1-217ENST00000593168 TRIM26Q12899 539 aaPredicted RBP20.81■□□□□ 0.92
VMP1-217ENST00000593168 RICTORQ6R327 1708 aa20.81■□□□□ 0.92
VMP1-217ENST00000593168 TIAM1Q13009 1591 aa20.8■□□□□ 0.92
VMP1-217ENST00000593168 RIMS1Q86UR5 1692 aaKnown RBP20.8■□□□□ 0.92
VMP1-217ENST00000593168 ARHGEF40Q8TER5 1519 aa20.79■□□□□ 0.92
VMP1-217ENST00000593168 ARID4BQ4LE39 1312 aaPredicted RBP20.78■□□□□ 0.92
VMP1-217ENST00000593168 LMTK3Q96Q04 1460 aa20.78■□□□□ 0.92
VMP1-217ENST00000593168 KANK4Q5T7N3 995 aaPredicted RBP20.78■□□□□ 0.92
VMP1-217ENST00000593168 HECW1Q76N89 1606 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms