RNA–Protein interactions for RNA: ENST00000592535.5

APOC1-208, Transcript of apolipoprotein C1, humanhuman

TSL 1 (best)

Gene APOC1, Length 430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-208ENST00000592535 JPH4Q96JJ6 628 aa23.84■■□□□ 1.41
APOC1-208ENST00000592535 CARMIL1Q5VZK9 1371 aa23.83■■□□□ 1.41
APOC1-208ENST00000592535 TRHP20396 242 aaPredicted RBP23.81■■□□□ 1.4
APOC1-208ENST00000592535 KIAA0586Q9BVV6 1533 aa23.8■■□□□ 1.4
APOC1-208ENST00000592535 RAPGEF2Q9Y4G8 1499 aa23.67■■□□□ 1.38
APOC1-208ENST00000592535 IQGAP2Q13576 1575 aa23.65■■□□□ 1.38
APOC1-208ENST00000592535 ADCY10Q96PN6 1610 aa23.57■■□□□ 1.36
APOC1-208ENST00000592535 CARMIL2Q6F5E8 1435 aa23.54■■□□□ 1.36
APOC1-208ENST00000592535 CTTNBP2Q8WZ74 1663 aa23.53■■□□□ 1.36
APOC1-208ENST00000592535 PRXQ9BXM0 1461 aa23.51■■□□□ 1.35
APOC1-208ENST00000592535 PTPRGP23470 1445 aa23.5■■□□□ 1.35
APOC1-208ENST00000592535 KIF13AQ9H1H9 1805 aa23.5■■□□□ 1.35
APOC1-208ENST00000592535 DISP1Q96F81 1524 aa23.5■■□□□ 1.35
APOC1-208ENST00000592535 UGGT2Q9NYU1 1516 aa23.5■■□□□ 1.35
APOC1-208ENST00000592535 TNIKQ9UKE5 1360 aa23.5■■□□□ 1.35
APOC1-208ENST00000592535 TTBK1Q5TCY1 1321 aaPredicted RBP23.48■■□□□ 1.35
APOC1-208ENST00000592535 NPM1P06748 294 aaKnown RBP eCLIP23.46■■□□□ 1.35
APOC1-208ENST00000592535 MAPKBP1O60336 1514 aa23.45■■□□□ 1.34
APOC1-208ENST00000592535 KIAA0556O60303 1618 aa23.44■■□□□ 1.34
APOC1-208ENST00000592535 ABCC10Q5T3U5 1492 aa23.38■■□□□ 1.33
APOC1-208ENST00000592535 CSRNP3Q8WYN3 585 aa23.38■■□□□ 1.33
APOC1-208ENST00000592535 DIP2BQ9P265 1576 aa23.36■■□□□ 1.33
APOC1-208ENST00000592535 EEA1Q15075 1411 aa23.35■■□□□ 1.33
APOC1-208ENST00000592535 ABCC2Q92887 1545 aa23.35■■□□□ 1.33
APOC1-208ENST00000592535 UHRF1BP1LA0JNW5 1464 aa23.35■■□□□ 1.33
APOC1-208ENST00000592535 UACAQ9BZF9 1416 aa23.34■■□□□ 1.33
APOC1-208ENST00000592535 FAM69CQ0P6D2 419 aa23.33■■□□□ 1.33
APOC1-208ENST00000592535 GOLGA3Q08378 1498 aa23.31■■□□□ 1.32
APOC1-208ENST00000592535 FAM9AQ8IZU1 332 aaPredicted RBP23.27■■□□□ 1.32
APOC1-208ENST00000592535 CHIC1Q5VXU3 224 aa23.26■■□□□ 1.31
APOC1-208ENST00000592535 KDM5BQ9UGL1 1544 aa23.24■■□□□ 1.31
APOC1-208ENST00000592535 ZCCHC11Q5TAX3 1644 aaKnown RBP23.24■■□□□ 1.31
APOC1-208ENST00000592535 ASXL2Q76L83 1435 aa23.24■■□□□ 1.31
APOC1-208ENST00000592535 TSPOAP1O95153 1857 aa23.23■■□□□ 1.31
APOC1-208ENST00000592535 PLB1Q6P1J6 1458 aa23.23■■□□□ 1.31
APOC1-208ENST00000592535 ABCA8O94911 1581 aa23.2■■□□□ 1.3
APOC1-208ENST00000592535 KIF21BO75037 1637 aa23.19■■□□□ 1.3
APOC1-208ENST00000592535 SAMD9Q5K651 1589 aa23.18■■□□□ 1.3
APOC1-208ENST00000592535 P3H3Q8IVL6 736 aa23.16■■□□□ 1.3
APOC1-208ENST00000592535 GLI2P10070 1586 aa23.15■■□□□ 1.3
APOC1-208ENST00000592535 EPRSP07814 1512 aaKnown RBP23.11■■□□□ 1.29
APOC1-208ENST00000592535 PPRC1Q5VV67 1664 aaKnown RBP23.1■■□□□ 1.29
APOC1-208ENST00000592535 KDM6BO15054 1643 aa23.08■■□□□ 1.28
APOC1-208ENST00000592535 WDR7Q9Y4E6 1490 aa23.07■■□□□ 1.28
APOC1-208ENST00000592535 RANGAP1P46060 587 aaPredicted RBP23.07■■□□□ 1.28
APOC1-208ENST00000592535 MAP3K4Q9Y6R4 1608 aa23.06■■□□□ 1.28
APOC1-208ENST00000592535 RAPGEF6Q8TEU7 1601 aa23.02■■□□□ 1.28
APOC1-208ENST00000592535 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
APOC1-208ENST00000592535 FHOD3Q2V2M9 1422 aa23.01■■□□□ 1.27
APOC1-208ENST00000592535 ARID3CA6NKF2 412 aa22.99■■□□□ 1.27
APOC1-208ENST00000592535 ATP10BO94823 1461 aa22.98■■□□□ 1.27
APOC1-208ENST00000592535 EFCAB5A4FU69 1503 aa22.98■■□□□ 1.27
APOC1-208ENST00000592535 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
APOC1-208ENST00000592535 KCNH8Q96L42 1107 aa22.95■■□□□ 1.26
APOC1-208ENST00000592535 CFAP43Q8NDM7 1665 aa22.94■■□□□ 1.26
APOC1-208ENST00000592535 TEX14Q8IWB6 1497 aa22.92■■□□□ 1.26
APOC1-208ENST00000592535 NUP153P49790 1475 aaKnown RBP22.92■■□□□ 1.26
APOC1-208ENST00000592535 CD109Q6YHK3 1445 aa22.88■■□□□ 1.25
APOC1-208ENST00000592535 COL17A1Q9UMD9 1497 aaPredicted RBP22.87■■□□□ 1.25
APOC1-208ENST00000592535 MAGI3Q5TCQ9 1506 aa22.86■■□□□ 1.25
APOC1-208ENST00000592535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.85■■□□□ 1.25
APOC1-208ENST00000592535 HNRNPUL2Q1KMD3 747 aaKnown RBP22.85■■□□□ 1.25
APOC1-208ENST00000592535 AEBP2Q6ZN18 517 aaPredicted RBP22.84■■□□□ 1.25
APOC1-208ENST00000592535 ARHGAP35Q9NRY4 1499 aa22.84■■□□□ 1.25
APOC1-208ENST00000592535 ABCA9Q8IUA7 1624 aa22.82■■□□□ 1.24
APOC1-208ENST00000592535 FMN1Q68DA7 1419 aa22.75■■□□□ 1.23
APOC1-208ENST00000592535 CDK13Q14004 1512 aaKnown RBP22.75■■□□□ 1.23
APOC1-208ENST00000592535 HECW1Q76N89 1606 aa22.73■■□□□ 1.23
APOC1-208ENST00000592535 PLEKHD1A6NEE1 506 aa22.72■■□□□ 1.23
APOC1-208ENST00000592535 ATP1B4Q9UN42 357 aaPredicted RBP22.67■■□□□ 1.22
APOC1-208ENST00000592535 ARAP3Q8WWN8 1544 aa22.67■■□□□ 1.22
APOC1-208ENST00000592535 LRRIQ1Q96JM4 1722 aa22.66■■□□□ 1.22
APOC1-208ENST00000592535 KDM4FA0A1W2PPD8 638 aa22.66■■□□□ 1.22
APOC1-208ENST00000592535 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.66■■□□□ 1.22
APOC1-208ENST00000592535 TTC37Q6PGP7 1564 aa22.64■■□□□ 1.22
APOC1-208ENST00000592535 NEO1Q92859 1461 aa22.64■■□□□ 1.21
APOC1-208ENST00000592535 PHLDB1Q86UU1 1377 aa22.63■■□□□ 1.21
APOC1-208ENST00000592535 PCF11O94913 1555 aaKnown RBP22.6■■□□□ 1.21
APOC1-208ENST00000592535 ADGRL1O94910 1474 aa22.59■■□□□ 1.21
APOC1-208ENST00000592535 CLIP1P30622 1438 aa22.57■■□□□ 1.2
APOC1-208ENST00000592535 CFAP74Q9C0B2 1584 aa22.56■■□□□ 1.2
APOC1-208ENST00000592535 CASKIN1Q8WXD9 1431 aa22.56■■□□□ 1.2
APOC1-208ENST00000592535 FRMPD1Q5SYB0 1578 aa22.55■■□□□ 1.2
APOC1-208ENST00000592535 FANCAO15360 1455 aa22.54■■□□□ 1.2
APOC1-208ENST00000592535 KIF14Q15058 1648 aa22.54■■□□□ 1.2
APOC1-208ENST00000592535 RAPGEF3O95398 923 aa22.54■■□□□ 1.2
APOC1-208ENST00000592535 CDK11AQ9UQ88 783 aaPredicted RBP22.53■■□□□ 1.2
APOC1-208ENST00000592535 TROQ12816 1431 aaPredicted RBP22.52■■□□□ 1.2
APOC1-208ENST00000592535 AKNAQ7Z591 1439 aa22.52■■□□□ 1.2
APOC1-208ENST00000592535 MYO5CQ9NQX4 1742 aa22.51■■□□□ 1.19
APOC1-208ENST00000592535 RICTORQ6R327 1708 aa22.51■■□□□ 1.19
APOC1-208ENST00000592535 CCDC18Q5T9S5 1454 aa22.5■■□□□ 1.19
APOC1-208ENST00000592535 FYCO1Q9BQS8 1478 aa22.49■■□□□ 1.19
APOC1-208ENST00000592535 PLCH2O75038 1416 aa22.48■■□□□ 1.19
APOC1-208ENST00000592535 DENND4BO75064 1496 aaPredicted RBP22.48■■□□□ 1.19
APOC1-208ENST00000592535 CEP162Q5TB80 1403 aa22.4■■□□□ 1.18
APOC1-208ENST00000592535 ZMYM4Q5VZL5 1548 aa22.4■■□□□ 1.18
APOC1-208ENST00000592535 ARHGEF40Q8TER5 1519 aa22.4■■□□□ 1.18
APOC1-208ENST00000592535 CDC42BPBQ9Y5S2 1711 aa22.39■■□□□ 1.17
APOC1-208ENST00000592535 SCAPERQ9BY12 1400 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms