RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 IGF1RP08069 1367 aa20.78■□□□□ 0.92
CLIP3-204ENST00000590559 CUL7Q14999 1698 aa20.77■□□□□ 0.92
CLIP3-204ENST00000590559 KIF27Q86VH2 1401 aa20.73■□□□□ 0.91
CLIP3-204ENST00000590559 KIAA0586Q9BVV6 1533 aa20.73■□□□□ 0.91
CLIP3-204ENST00000590559 ADCY10Q96PN6 1610 aa20.69■□□□□ 0.9
CLIP3-204ENST00000590559 MAPKBP1O60336 1514 aa20.68■□□□□ 0.9
CLIP3-204ENST00000590559 ABCC10Q5T3U5 1492 aa20.63■□□□□ 0.89
CLIP3-204ENST00000590559 DIP2BQ9P265 1576 aa20.6■□□□□ 0.89
CLIP3-204ENST00000590559 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
CLIP3-204ENST00000590559 NPM1P06748 294 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLIP3-204ENST00000590559 FAM69CQ0P6D2 419 aa20.53■□□□□ 0.88
CLIP3-204ENST00000590559 IQGAP2Q13576 1575 aa20.52■□□□□ 0.88
CLIP3-204ENST00000590559 AEBP2Q6ZN18 517 aaPredicted RBP20.5■□□□□ 0.87
CLIP3-204ENST00000590559 PTPRGP23470 1445 aa20.49■□□□□ 0.87
CLIP3-204ENST00000590559 TNIKQ9UKE5 1360 aa20.47■□□□□ 0.87
CLIP3-204ENST00000590559 CARMIL2Q6F5E8 1435 aa20.46■□□□□ 0.87
CLIP3-204ENST00000590559 DISP1Q96F81 1524 aa20.46■□□□□ 0.87
CLIP3-204ENST00000590559 ABCC2Q92887 1545 aa20.45■□□□□ 0.86
CLIP3-204ENST00000590559 UHRF1BP1LA0JNW5 1464 aa20.43■□□□□ 0.86
CLIP3-204ENST00000590559 TSPOAP1O95153 1857 aa20.43■□□□□ 0.86
CLIP3-204ENST00000590559 RAPGEF2Q9Y4G8 1499 aa20.43■□□□□ 0.86
CLIP3-204ENST00000590559 UGGT2Q9NYU1 1516 aa20.43■□□□□ 0.86
CLIP3-204ENST00000590559 KDM6BO15054 1643 aa20.39■□□□□ 0.86
CLIP3-204ENST00000590559 PPRC1Q5VV67 1664 aaKnown RBP20.38■□□□□ 0.85
CLIP3-204ENST00000590559 GLI2P10070 1586 aa20.38■□□□□ 0.85
CLIP3-204ENST00000590559 PLB1Q6P1J6 1458 aa20.36■□□□□ 0.85
CLIP3-204ENST00000590559 ASXL2Q76L83 1435 aa20.36■□□□□ 0.85
CLIP3-204ENST00000590559 UACAQ9BZF9 1416 aa20.36■□□□□ 0.85
CLIP3-204ENST00000590559 KIAA0556O60303 1618 aa20.35■□□□□ 0.85
CLIP3-204ENST00000590559 KDM5BQ9UGL1 1544 aa20.34■□□□□ 0.85
CLIP3-204ENST00000590559 CTTNBP2Q8WZ74 1663 aa20.33■□□□□ 0.85
CLIP3-204ENST00000590559 TTBK1Q5TCY1 1321 aaPredicted RBP20.31■□□□□ 0.84
CLIP3-204ENST00000590559 ZCCHC11Q5TAX3 1644 aaKnown RBP20.3■□□□□ 0.84
CLIP3-204ENST00000590559 MAP3K4Q9Y6R4 1608 aa20.28■□□□□ 0.84
CLIP3-204ENST00000590559 EPRSP07814 1512 aaKnown RBP20.27■□□□□ 0.83
CLIP3-204ENST00000590559 PRXQ9BXM0 1461 aa20.24■□□□□ 0.83
CLIP3-204ENST00000590559 KDM4FA0A1W2PPD8 638 aa20.22■□□□□ 0.83
CLIP3-204ENST00000590559 ABCA8O94911 1581 aa20.19■□□□□ 0.82
CLIP3-204ENST00000590559 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
CLIP3-204ENST00000590559 COL17A1Q9UMD9 1497 aaPredicted RBP20.18■□□□□ 0.82
CLIP3-204ENST00000590559 WDR7Q9Y4E6 1490 aa20.16■□□□□ 0.82
CLIP3-204ENST00000590559 TEX14Q8IWB6 1497 aa20.13■□□□□ 0.81
CLIP3-204ENST00000590559 CFAP43Q8NDM7 1665 aa20.1■□□□□ 0.81
CLIP3-204ENST00000590559 MAGI3Q5TCQ9 1506 aa20.07■□□□□ 0.8
CLIP3-204ENST00000590559 SAMD9Q5K651 1589 aa20.04■□□□□ 0.8
CLIP3-204ENST00000590559 ADGRL1O94910 1474 aa20.03■□□□□ 0.8
CLIP3-204ENST00000590559 CD109Q6YHK3 1445 aa20.02■□□□□ 0.79
CLIP3-204ENST00000590559 ATP10BO94823 1461 aa19.99■□□□□ 0.79
CLIP3-204ENST00000590559 CSRNP3Q8WYN3 585 aa19.99■□□□□ 0.79
CLIP3-204ENST00000590559 KCNH8Q96L42 1107 aa19.95■□□□□ 0.78
CLIP3-204ENST00000590559 ABCA9Q8IUA7 1624 aa19.94■□□□□ 0.78
CLIP3-204ENST00000590559 RAPGEF6Q8TEU7 1601 aa19.94■□□□□ 0.78
CLIP3-204ENST00000590559 EEA1Q15075 1411 aa19.93■□□□□ 0.78
CLIP3-204ENST00000590559 ARAP3Q8WWN8 1544 aa19.92■□□□□ 0.78
CLIP3-204ENST00000590559 P3H3Q8IVL6 736 aa19.92■□□□□ 0.78
CLIP3-204ENST00000590559 NUP153P49790 1475 aaKnown RBP19.86■□□□□ 0.77
CLIP3-204ENST00000590559 KIF21BO75037 1637 aa19.84■□□□□ 0.77
CLIP3-204ENST00000590559 ARID3CA6NKF2 412 aa19.84■□□□□ 0.77
CLIP3-204ENST00000590559 FAM9AQ8IZU1 332 aaPredicted RBP19.84■□□□□ 0.77
CLIP3-204ENST00000590559 PHLDB1Q86UU1 1377 aa19.83■□□□□ 0.76
CLIP3-204ENST00000590559 FHOD3Q2V2M9 1422 aa19.8■□□□□ 0.76
CLIP3-204ENST00000590559 NEO1Q92859 1461 aa19.79■□□□□ 0.76
CLIP3-204ENST00000590559 HECW2Q9P2P5 1572 aa19.79■□□□□ 0.76
CLIP3-204ENST00000590559 EFCAB5A4FU69 1503 aa19.78■□□□□ 0.76
CLIP3-204ENST00000590559 FRMPD1Q5SYB0 1578 aa19.78■□□□□ 0.76
CLIP3-204ENST00000590559 ADAMTSL3P82987 1691 aa19.74■□□□□ 0.75
CLIP3-204ENST00000590559 RICTORQ6R327 1708 aa19.71■□□□□ 0.75
CLIP3-204ENST00000590559 RAPGEF3O95398 923 aa19.7■□□□□ 0.74
CLIP3-204ENST00000590559 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLIP3-204ENST00000590559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.68■□□□□ 0.74
CLIP3-204ENST00000590559 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
CLIP3-204ENST00000590559 HNRNPUL2Q1KMD3 747 aaKnown RBP19.68■□□□□ 0.74
CLIP3-204ENST00000590559 BCORL1Q5H9F3 1711 aa19.68■□□□□ 0.74
CLIP3-204ENST00000590559 TTC37Q6PGP7 1564 aa19.67■□□□□ 0.74
CLIP3-204ENST00000590559 CFAP74Q9C0B2 1584 aa19.66■□□□□ 0.74
CLIP3-204ENST00000590559 PLEKHD1A6NEE1 506 aa19.66■□□□□ 0.74
CLIP3-204ENST00000590559 AKNAQ7Z591 1439 aa19.64■□□□□ 0.73
CLIP3-204ENST00000590559 ARHGEF40Q8TER5 1519 aa19.64■□□□□ 0.73
CLIP3-204ENST00000590559 CDK13Q14004 1512 aaKnown RBP19.63■□□□□ 0.73
CLIP3-204ENST00000590559 FANCAO15360 1455 aa19.63■□□□□ 0.73
CLIP3-204ENST00000590559 PTPRMP28827 1452 aa19.62■□□□□ 0.73
CLIP3-204ENST00000590559 ZMYM4Q5VZL5 1548 aa19.61■□□□□ 0.73
CLIP3-204ENST00000590559 DENND4BO75064 1496 aaPredicted RBP19.61■□□□□ 0.73
CLIP3-204ENST00000590559 ILDR1Q86SU0 546 aaPredicted RBP19.61■□□□□ 0.73
CLIP3-204ENST00000590559 ARHGAP35Q9NRY4 1499 aa19.6■□□□□ 0.73
CLIP3-204ENST00000590559 MADDQ8WXG6 1647 aa19.6■□□□□ 0.73
CLIP3-204ENST00000590559 SIGLEC1Q9BZZ2 1709 aa19.59■□□□□ 0.73
CLIP3-204ENST00000590559 CHIC1Q5VXU3 224 aa19.58■□□□□ 0.72
CLIP3-204ENST00000590559 HECW1Q76N89 1606 aa19.58■□□□□ 0.72
CLIP3-204ENST00000590559 FMN1Q68DA7 1419 aa19.57■□□□□ 0.72
CLIP3-204ENST00000590559 LRRIQ1Q96JM4 1722 aa19.56■□□□□ 0.72
CLIP3-204ENST00000590559 PLCH2O75038 1416 aa19.56■□□□□ 0.72
CLIP3-204ENST00000590559 MYO5CQ9NQX4 1742 aa19.54■□□□□ 0.72
CLIP3-204ENST00000590559 MAGI2Q86UL8 1455 aa19.53■□□□□ 0.72
CLIP3-204ENST00000590559 YEATS2Q9ULM3 1422 aa19.51■□□□□ 0.71
CLIP3-204ENST00000590559 ZFYVE16Q7Z3T8 1539 aa19.51■□□□□ 0.71
CLIP3-204ENST00000590559 UBTFP17480 764 aaKnown RBP19.51■□□□□ 0.71
CLIP3-204ENST00000590559 RIMS1Q86UR5 1692 aaKnown RBP19.51■□□□□ 0.71
CLIP3-204ENST00000590559 KIF14Q15058 1648 aa19.51■□□□□ 0.71
CLIP3-204ENST00000590559 POGZQ7Z3K3 1410 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms