RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 RUSC2Q8N2Y8 1516 aa24.85■■□□□ 1.57
VMP1-206ENST00000587945 CARMIL1Q5VZK9 1371 aa24.8■■□□□ 1.56
VMP1-206ENST00000587945 KIAA0586Q9BVV6 1533 aa24.79■■□□□ 1.56
VMP1-206ENST00000587945 CUL7Q14999 1698 aa24.75■■□□□ 1.55
VMP1-206ENST00000587945 NPM1P06748 294 aaKnown RBP eCLIP24.66■■□□□ 1.54
VMP1-206ENST00000587945 TTBK1Q5TCY1 1321 aaPredicted RBP24.64■■□□□ 1.54
VMP1-206ENST00000587945 PTPRGP23470 1445 aa24.59■■□□□ 1.53
VMP1-206ENST00000587945 FAM69CQ0P6D2 419 aa24.58■■□□□ 1.53
VMP1-206ENST00000587945 ADCY10Q96PN6 1610 aa24.57■■□□□ 1.52
VMP1-206ENST00000587945 RAPGEF2Q9Y4G8 1499 aa24.55■■□□□ 1.52
VMP1-206ENST00000587945 CARMIL2Q6F5E8 1435 aa24.54■■□□□ 1.52
VMP1-206ENST00000587945 TNIKQ9UKE5 1360 aa24.54■■□□□ 1.52
VMP1-206ENST00000587945 ABCC10Q5T3U5 1492 aa24.52■■□□□ 1.52
VMP1-206ENST00000587945 IQGAP2Q13576 1575 aa24.52■■□□□ 1.52
VMP1-206ENST00000587945 MAPKBP1O60336 1514 aa24.5■■□□□ 1.51
VMP1-206ENST00000587945 KIF13AQ9H1H9 1805 aa24.47■■□□□ 1.51
VMP1-206ENST00000587945 DISP1Q96F81 1524 aa24.45■■□□□ 1.51
VMP1-206ENST00000587945 DIP2BQ9P265 1576 aa24.41■■□□□ 1.5
VMP1-206ENST00000587945 UGGT2Q9NYU1 1516 aa24.4■■□□□ 1.5
VMP1-206ENST00000587945 ABCC2Q92887 1545 aa24.39■■□□□ 1.49
VMP1-206ENST00000587945 UACAQ9BZF9 1416 aa24.38■■□□□ 1.49
VMP1-206ENST00000587945 AEBP2Q6ZN18 517 aaPredicted RBP24.37■■□□□ 1.49
VMP1-206ENST00000587945 UHRF1BP1LA0JNW5 1464 aa24.34■■□□□ 1.49
VMP1-206ENST00000587945 PRXQ9BXM0 1461 aa24.34■■□□□ 1.49
VMP1-206ENST00000587945 ASXL2Q76L83 1435 aa24.33■■□□□ 1.49
VMP1-206ENST00000587945 KIAA0556O60303 1618 aa24.3■■□□□ 1.48
VMP1-206ENST00000587945 PLB1Q6P1J6 1458 aa24.27■■□□□ 1.48
VMP1-206ENST00000587945 CSRNP3Q8WYN3 585 aa24.24■■□□□ 1.47
VMP1-206ENST00000587945 KDM5BQ9UGL1 1544 aa24.24■■□□□ 1.47
VMP1-206ENST00000587945 GOLGA3Q08378 1498 aa24.2■■□□□ 1.47
VMP1-206ENST00000587945 CTTNBP2Q8WZ74 1663 aa24.18■■□□□ 1.46
VMP1-206ENST00000587945 TSPOAP1O95153 1857 aa24.18■■□□□ 1.46
VMP1-206ENST00000587945 P3H3Q8IVL6 736 aa24.17■■□□□ 1.46
VMP1-206ENST00000587945 EPRSP07814 1512 aaKnown RBP24.16■■□□□ 1.46
VMP1-206ENST00000587945 KDM6BO15054 1643 aa24.16■■□□□ 1.46
VMP1-206ENST00000587945 GLI2P10070 1586 aa24.16■■□□□ 1.46
VMP1-206ENST00000587945 ZCCHC11Q5TAX3 1644 aaKnown RBP24.13■■□□□ 1.45
VMP1-206ENST00000587945 FAM9AQ8IZU1 332 aaPredicted RBP24.13■■□□□ 1.45
VMP1-206ENST00000587945 ABCA8O94911 1581 aa24.09■■□□□ 1.45
VMP1-206ENST00000587945 WDR7Q9Y4E6 1490 aa24.08■■□□□ 1.45
VMP1-206ENST00000587945 ARID3CA6NKF2 412 aa24.08■■□□□ 1.45
VMP1-206ENST00000587945 KCNH8Q96L42 1107 aa24.06■■□□□ 1.44
VMP1-206ENST00000587945 EEA1Q15075 1411 aa24.06■■□□□ 1.44
VMP1-206ENST00000587945 PPRC1Q5VV67 1664 aaKnown RBP24.05■■□□□ 1.44
VMP1-206ENST00000587945 RANGAP1P46060 587 aaPredicted RBP24.05■■□□□ 1.44
VMP1-206ENST00000587945 COL17A1Q9UMD9 1497 aaPredicted RBP24.03■■□□□ 1.44
VMP1-206ENST00000587945 KDM4FA0A1W2PPD8 638 aa24.01■■□□□ 1.43
VMP1-206ENST00000587945 MAP3K4Q9Y6R4 1608 aa24■■□□□ 1.43
VMP1-206ENST00000587945 TEX14Q8IWB6 1497 aa23.98■■□□□ 1.43
VMP1-206ENST00000587945 ATP10BO94823 1461 aa23.95■■□□□ 1.42
VMP1-206ENST00000587945 CD109Q6YHK3 1445 aa23.95■■□□□ 1.42
VMP1-206ENST00000587945 SAMD9Q5K651 1589 aa23.94■■□□□ 1.42
VMP1-206ENST00000587945 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
VMP1-206ENST00000587945 EHMT2Q96KQ7 1210 aa23.92■■□□□ 1.42
VMP1-206ENST00000587945 FHOD3Q2V2M9 1422 aa23.91■■□□□ 1.42
VMP1-206ENST00000587945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.88■■□□□ 1.41
VMP1-206ENST00000587945 HNRNPUL2Q1KMD3 747 aaKnown RBP23.88■■□□□ 1.41
VMP1-206ENST00000587945 MAGI3Q5TCQ9 1506 aa23.88■■□□□ 1.41
VMP1-206ENST00000587945 KIF21BO75037 1637 aa23.82■■□□□ 1.4
VMP1-206ENST00000587945 RAPGEF6Q8TEU7 1601 aa23.82■■□□□ 1.4
VMP1-206ENST00000587945 CFAP43Q8NDM7 1665 aa23.82■■□□□ 1.4
VMP1-206ENST00000587945 NUP153P49790 1475 aaKnown RBP23.81■■□□□ 1.4
VMP1-206ENST00000587945 UBTFP17480 764 aaKnown RBP23.8■■□□□ 1.4
VMP1-206ENST00000587945 ADGRL1O94910 1474 aa23.77■■□□□ 1.4
VMP1-206ENST00000587945 EFCAB5A4FU69 1503 aa23.73■■□□□ 1.39
VMP1-206ENST00000587945 PLEKHD1A6NEE1 506 aa23.71■■□□□ 1.39
VMP1-206ENST00000587945 ABCA9Q8IUA7 1624 aa23.7■■□□□ 1.38
VMP1-206ENST00000587945 ARAP3Q8WWN8 1544 aa23.68■■□□□ 1.38
VMP1-206ENST00000587945 RAPGEF3O95398 923 aa23.67■■□□□ 1.38
VMP1-206ENST00000587945 PHLDB1Q86UU1 1377 aa23.65■■□□□ 1.38
VMP1-206ENST00000587945 ATP1B4Q9UN42 357 aaPredicted RBP23.64■■□□□ 1.37
VMP1-206ENST00000587945 NEO1Q92859 1461 aa23.62■■□□□ 1.37
VMP1-206ENST00000587945 ARHGAP35Q9NRY4 1499 aa23.62■■□□□ 1.37
VMP1-206ENST00000587945 CDK13Q14004 1512 aaKnown RBP23.61■■□□□ 1.37
VMP1-206ENST00000587945 FMN1Q68DA7 1419 aa23.57■■□□□ 1.36
VMP1-206ENST00000587945 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.54■■□□□ 1.36
VMP1-206ENST00000587945 AKNAQ7Z591 1439 aa23.52■■□□□ 1.36
VMP1-206ENST00000587945 FANCAO15360 1455 aa23.5■■□□□ 1.35
VMP1-206ENST00000587945 TTC37Q6PGP7 1564 aa23.49■■□□□ 1.35
VMP1-206ENST00000587945 DENND4BO75064 1496 aaPredicted RBP23.49■■□□□ 1.35
VMP1-206ENST00000587945 FRMPD1Q5SYB0 1578 aa23.48■■□□□ 1.35
VMP1-206ENST00000587945 HECW1Q76N89 1606 aa23.46■■□□□ 1.35
VMP1-206ENST00000587945 CDK11AQ9UQ88 783 aaPredicted RBP23.46■■□□□ 1.35
VMP1-206ENST00000587945 ARID4BQ4LE39 1312 aaPredicted RBP23.45■■□□□ 1.34
VMP1-206ENST00000587945 PLCH2O75038 1416 aa23.43■■□□□ 1.34
VMP1-206ENST00000587945 TROQ12816 1431 aaPredicted RBP23.39■■□□□ 1.33
VMP1-206ENST00000587945 EFCAB2Q5VUJ9 269 aa23.38■■□□□ 1.33
VMP1-206ENST00000587945 SCAPERQ9BY12 1400 aa23.38■■□□□ 1.33
VMP1-206ENST00000587945 CFAP74Q9C0B2 1584 aa23.37■■□□□ 1.33
VMP1-206ENST00000587945 HECW2Q9P2P5 1572 aa23.37■■□□□ 1.33
VMP1-206ENST00000587945 YEATS2Q9ULM3 1422 aa23.35■■□□□ 1.33
VMP1-206ENST00000587945 CASKIN1Q8WXD9 1431 aa23.34■■□□□ 1.33
VMP1-206ENST00000587945 ARHGEF40Q8TER5 1519 aa23.34■■□□□ 1.33
VMP1-206ENST00000587945 KIF14Q15058 1648 aa23.34■■□□□ 1.33
VMP1-206ENST00000587945 RICTORQ6R327 1708 aa23.34■■□□□ 1.33
VMP1-206ENST00000587945 CLIP1P30622 1438 aa23.33■■□□□ 1.33
VMP1-206ENST00000587945 PTPRMP28827 1452 aa23.33■■□□□ 1.33
VMP1-206ENST00000587945 POGZQ7Z3K3 1410 aa23.32■■□□□ 1.32
VMP1-206ENST00000587945 ADAMTSL3P82987 1691 aa23.32■■□□□ 1.32
VMP1-206ENST00000587945 ZMYM4Q5VZL5 1548 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms