RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 IGF1RP08069 1367 aa20.5■□□□□ 0.87
LIG3-207ENST00000586119 RUSC2Q8N2Y8 1516 aa20.5■□□□□ 0.87
LIG3-207ENST00000586119 FAM69CQ0P6D2 419 aa20.42■□□□□ 0.86
LIG3-207ENST00000586119 KIF27Q86VH2 1401 aa20.42■□□□□ 0.86
LIG3-207ENST00000586119 NPM1P06748 294 aaKnown RBP eCLIP20.4■□□□□ 0.86
LIG3-207ENST00000586119 KIAA0586Q9BVV6 1533 aa20.4■□□□□ 0.86
LIG3-207ENST00000586119 ADCY10Q96PN6 1610 aa20.39■□□□□ 0.86
LIG3-207ENST00000586119 TTBK1Q5TCY1 1321 aaPredicted RBP20.37■□□□□ 0.85
LIG3-207ENST00000586119 ABCC10Q5T3U5 1492 aa20.36■□□□□ 0.85
LIG3-207ENST00000586119 CUL7Q14999 1698 aa20.35■□□□□ 0.85
LIG3-207ENST00000586119 CARMIL1Q5VZK9 1371 aa20.34■□□□□ 0.85
LIG3-207ENST00000586119 MAPKBP1O60336 1514 aa20.31■□□□□ 0.84
LIG3-207ENST00000586119 DIP2BQ9P265 1576 aa20.29■□□□□ 0.84
LIG3-207ENST00000586119 TSPOAP1O95153 1857 aa20.28■□□□□ 0.84
LIG3-207ENST00000586119 PTPRGP23470 1445 aa20.27■□□□□ 0.84
LIG3-207ENST00000586119 TNIKQ9UKE5 1360 aa20.21■□□□□ 0.83
LIG3-207ENST00000586119 CARMIL2Q6F5E8 1435 aa20.18■□□□□ 0.82
LIG3-207ENST00000586119 IQGAP2Q13576 1575 aa20.17■□□□□ 0.82
LIG3-207ENST00000586119 DISP1Q96F81 1524 aa20.15■□□□□ 0.82
LIG3-207ENST00000586119 KDM6BO15054 1643 aa20.14■□□□□ 0.81
LIG3-207ENST00000586119 ABCC2Q92887 1545 aa20.13■□□□□ 0.81
LIG3-207ENST00000586119 KDM4FA0A1W2PPD8 638 aa20.13■□□□□ 0.81
LIG3-207ENST00000586119 ASXL2Q76L83 1435 aa20.12■□□□□ 0.81
LIG3-207ENST00000586119 RAPGEF2Q9Y4G8 1499 aa20.11■□□□□ 0.81
LIG3-207ENST00000586119 UACAQ9BZF9 1416 aa20.1■□□□□ 0.81
LIG3-207ENST00000586119 PPRC1Q5VV67 1664 aaKnown RBP20.07■□□□□ 0.8
LIG3-207ENST00000586119 UHRF1BP1LA0JNW5 1464 aa20.07■□□□□ 0.8
LIG3-207ENST00000586119 UGGT2Q9NYU1 1516 aa20.05■□□□□ 0.8
LIG3-207ENST00000586119 PLB1Q6P1J6 1458 aa20.05■□□□□ 0.8
LIG3-207ENST00000586119 GLI2P10070 1586 aa20.02■□□□□ 0.8
LIG3-207ENST00000586119 KIAA0556O60303 1618 aa20.02■□□□□ 0.79
LIG3-207ENST00000586119 KDM5BQ9UGL1 1544 aa20.01■□□□□ 0.79
LIG3-207ENST00000586119 COL17A1Q9UMD9 1497 aaPredicted RBP20■□□□□ 0.79
LIG3-207ENST00000586119 ZCCHC11Q5TAX3 1644 aaKnown RBP19.99■□□□□ 0.79
LIG3-207ENST00000586119 EPRSP07814 1512 aaKnown RBP19.99■□□□□ 0.79
LIG3-207ENST00000586119 MAP3K4Q9Y6R4 1608 aa19.94■□□□□ 0.78
LIG3-207ENST00000586119 CTTNBP2Q8WZ74 1663 aa19.94■□□□□ 0.78
LIG3-207ENST00000586119 KCNH8Q96L42 1107 aa19.9■□□□□ 0.78
LIG3-207ENST00000586119 PRXQ9BXM0 1461 aa19.88■□□□□ 0.77
LIG3-207ENST00000586119 P3H3Q8IVL6 736 aa19.88■□□□□ 0.77
LIG3-207ENST00000586119 WDR7Q9Y4E6 1490 aa19.86■□□□□ 0.77
LIG3-207ENST00000586119 ARID3CA6NKF2 412 aa19.86■□□□□ 0.77
LIG3-207ENST00000586119 ABCA8O94911 1581 aa19.85■□□□□ 0.77
LIG3-207ENST00000586119 ADGRL1O94910 1474 aa19.84■□□□□ 0.77
LIG3-207ENST00000586119 GOLGA3Q08378 1498 aa19.83■□□□□ 0.76
LIG3-207ENST00000586119 TEX14Q8IWB6 1497 aa19.82■□□□□ 0.76
LIG3-207ENST00000586119 CD109Q6YHK3 1445 aa19.8■□□□□ 0.76
LIG3-207ENST00000586119 CSRNP3Q8WYN3 585 aa19.76■□□□□ 0.75
LIG3-207ENST00000586119 MAGI3Q5TCQ9 1506 aa19.74■□□□□ 0.75
LIG3-207ENST00000586119 CFAP43Q8NDM7 1665 aa19.74■□□□□ 0.75
LIG3-207ENST00000586119 ATP10BO94823 1461 aa19.73■□□□□ 0.75
LIG3-207ENST00000586119 RANGAP1P46060 587 aaPredicted RBP19.73■□□□□ 0.75
LIG3-207ENST00000586119 FAM9AQ8IZU1 332 aaPredicted RBP19.67■□□□□ 0.74
LIG3-207ENST00000586119 SAMD9Q5K651 1589 aa19.65■□□□□ 0.74
LIG3-207ENST00000586119 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.63■□□□□ 0.73
LIG3-207ENST00000586119 HNRNPUL2Q1KMD3 747 aaKnown RBP19.63■□□□□ 0.73
LIG3-207ENST00000586119 ILDR1Q86SU0 546 aaPredicted RBP19.63■□□□□ 0.73
LIG3-207ENST00000586119 KIF21BO75037 1637 aa19.62■□□□□ 0.73
LIG3-207ENST00000586119 RAPGEF6Q8TEU7 1601 aa19.61■□□□□ 0.73
LIG3-207ENST00000586119 RAPGEF3O95398 923 aa19.6■□□□□ 0.73
LIG3-207ENST00000586119 HECW2Q9P2P5 1572 aa19.6■□□□□ 0.73
LIG3-207ENST00000586119 ARAP3Q8WWN8 1544 aa19.59■□□□□ 0.73
LIG3-207ENST00000586119 FHOD3Q2V2M9 1422 aa19.59■□□□□ 0.73
LIG3-207ENST00000586119 ABCA9Q8IUA7 1624 aa19.58■□□□□ 0.73
LIG3-207ENST00000586119 NUP153P49790 1475 aaKnown RBP19.55■□□□□ 0.72
LIG3-207ENST00000586119 EHMT2Q96KQ7 1210 aa19.55■□□□□ 0.72
LIG3-207ENST00000586119 EEA1Q15075 1411 aa19.51■□□□□ 0.71
LIG3-207ENST00000586119 PHLDB1Q86UU1 1377 aa19.48■□□□□ 0.71
LIG3-207ENST00000586119 PLEKHD1A6NEE1 506 aa19.48■□□□□ 0.71
LIG3-207ENST00000586119 NEO1Q92859 1461 aa19.47■□□□□ 0.71
LIG3-207ENST00000586119 FRMPD1Q5SYB0 1578 aa19.46■□□□□ 0.71
LIG3-207ENST00000586119 ADAMTSL3P82987 1691 aa19.44■□□□□ 0.7
LIG3-207ENST00000586119 ARID4BQ4LE39 1312 aaPredicted RBP19.43■□□□□ 0.7
LIG3-207ENST00000586119 PTPRMP28827 1452 aa19.41■□□□□ 0.7
LIG3-207ENST00000586119 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.41■□□□□ 0.7
LIG3-207ENST00000586119 AKNAQ7Z591 1439 aa19.4■□□□□ 0.7
LIG3-207ENST00000586119 CDK13Q14004 1512 aaKnown RBP19.39■□□□□ 0.69
LIG3-207ENST00000586119 BCORL1Q5H9F3 1711 aa19.39■□□□□ 0.69
LIG3-207ENST00000586119 UBTFP17480 764 aaKnown RBP19.38■□□□□ 0.69
LIG3-207ENST00000586119 ATP1B4Q9UN42 357 aaPredicted RBP19.38■□□□□ 0.69
LIG3-207ENST00000586119 RICTORQ6R327 1708 aa19.37■□□□□ 0.69
LIG3-207ENST00000586119 TTC37Q6PGP7 1564 aa19.37■□□□□ 0.69
LIG3-207ENST00000586119 DENND4BO75064 1496 aaPredicted RBP19.37■□□□□ 0.69
LIG3-207ENST00000586119 MADDQ8WXG6 1647 aa19.36■□□□□ 0.69
LIG3-207ENST00000586119 EFCAB5A4FU69 1503 aa19.36■□□□□ 0.69
LIG3-207ENST00000586119 FANCAO15360 1455 aa19.36■□□□□ 0.69
LIG3-207ENST00000586119 CHIC1Q5VXU3 224 aa19.34■□□□□ 0.69
LIG3-207ENST00000586119 PLPPR3Q6T4P5 718 aa19.34■□□□□ 0.69
LIG3-207ENST00000586119 SIGLEC1Q9BZZ2 1709 aa19.33■□□□□ 0.68
LIG3-207ENST00000586119 YEATS2Q9ULM3 1422 aa19.32■□□□□ 0.68
LIG3-207ENST00000586119 RIMS1Q86UR5 1692 aaKnown RBP19.3■□□□□ 0.68
LIG3-207ENST00000586119 ARHGEF40Q8TER5 1519 aa19.3■□□□□ 0.68
LIG3-207ENST00000586119 ARHGAP35Q9NRY4 1499 aa19.29■□□□□ 0.68
LIG3-207ENST00000586119 MLECQ14165 292 aa19.28■□□□□ 0.68
LIG3-207ENST00000586119 PLCH2O75038 1416 aa19.27■□□□□ 0.68
LIG3-207ENST00000586119 SCAPERQ9BY12 1400 aa19.27■□□□□ 0.68
LIG3-207ENST00000586119 CFAP74Q9C0B2 1584 aa19.27■□□□□ 0.67
LIG3-207ENST00000586119 HECW1Q76N89 1606 aa19.26■□□□□ 0.67
LIG3-207ENST00000586119 HSPA2P54652 639 aa19.25■□□□□ 0.67
LIG3-207ENST00000586119 ZFYVE16Q7Z3T8 1539 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms