RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 PRXQ9BXM0 1461 aa20.93■□□□□ 0.94
VMP1-202ENST00000585847 FAM9AQ8IZU1 332 aaPredicted RBP20.92■□□□□ 0.94
VMP1-202ENST00000585847 CEP170Q5SW79 1584 aa20.87■□□□□ 0.93
VMP1-202ENST00000585847 RAPGEF2Q9Y4G8 1499 aa20.87■□□□□ 0.93
VMP1-202ENST00000585847 NUP160Q12769 1436 aa20.87■□□□□ 0.93
VMP1-202ENST00000585847 CLASP1Q7Z460 1538 aa20.85■□□□□ 0.93
VMP1-202ENST00000585847 KIF21BO75037 1637 aa20.79■□□□□ 0.92
VMP1-202ENST00000585847 KIAA0586Q9BVV6 1533 aa20.71■□□□□ 0.91
VMP1-202ENST00000585847 SHROOM2Q13796 1616 aa20.69■□□□□ 0.9
VMP1-202ENST00000585847 CTTNBP2Q8WZ74 1663 aa20.68■□□□□ 0.9
VMP1-202ENST00000585847 GOLGA3Q08378 1498 aa20.66■□□□□ 0.9
VMP1-202ENST00000585847 IQGAP2Q13576 1575 aa20.63■□□□□ 0.89
VMP1-202ENST00000585847 EHMT2Q96KQ7 1210 aa20.62■□□□□ 0.89
VMP1-202ENST00000585847 ERCC6L2Q5T890 1561 aa20.61■□□□□ 0.89
VMP1-202ENST00000585847 JPH4Q96JJ6 628 aa20.61■□□□□ 0.89
VMP1-202ENST00000585847 UGGT2Q9NYU1 1516 aa20.57■□□□□ 0.88
VMP1-202ENST00000585847 PRG4Q92954 1404 aaPredicted RBP20.54■□□□□ 0.88
VMP1-202ENST00000585847 DISP1Q96F81 1524 aa20.53■□□□□ 0.88
VMP1-202ENST00000585847 LOC105371045A0A1W2PR82 267 aa20.52■□□□□ 0.88
VMP1-202ENST00000585847 UBTFP17480 764 aaKnown RBP20.52■□□□□ 0.88
VMP1-202ENST00000585847 TNIKQ9UKE5 1360 aa20.47■□□□□ 0.87
VMP1-202ENST00000585847 KIAA0556O60303 1618 aa20.47■□□□□ 0.87
VMP1-202ENST00000585847 SAMD9Q5K651 1589 aa20.46■□□□□ 0.87
VMP1-202ENST00000585847 CARMIL2Q6F5E8 1435 aa20.4■□□□□ 0.86
VMP1-202ENST00000585847 ARHGAP35Q9NRY4 1499 aa20.38■□□□□ 0.85
VMP1-202ENST00000585847 RANGAP1P46060 587 aaPredicted RBP20.38■□□□□ 0.85
VMP1-202ENST00000585847 EFCAB5A4FU69 1503 aa20.36■□□□□ 0.85
VMP1-202ENST00000585847 P3H3Q8IVL6 736 aa20.35■□□□□ 0.85
VMP1-202ENST00000585847 FHOD3Q2V2M9 1422 aa20.33■□□□□ 0.84
VMP1-202ENST00000585847 PTPRGP23470 1445 aa20.32■□□□□ 0.84
VMP1-202ENST00000585847 KIF13AQ9H1H9 1805 aa20.3■□□□□ 0.84
VMP1-202ENST00000585847 CLIP1P30622 1438 aa20.29■□□□□ 0.84
VMP1-202ENST00000585847 CEP162Q5TB80 1403 aa20.29■□□□□ 0.84
VMP1-202ENST00000585847 TTBK1Q5TCY1 1321 aaPredicted RBP20.26■□□□□ 0.83
VMP1-202ENST00000585847 NPM1P06748 294 aaKnown RBP eCLIP20.25■□□□□ 0.83
VMP1-202ENST00000585847 ABCA8O94911 1581 aa20.25■□□□□ 0.83
VMP1-202ENST00000585847 ADCY10Q96PN6 1610 aa20.24■□□□□ 0.83
VMP1-202ENST00000585847 PLB1Q6P1J6 1458 aa20.24■□□□□ 0.83
VMP1-202ENST00000585847 UACAQ9BZF9 1416 aa20.21■□□□□ 0.83
VMP1-202ENST00000585847 UHRF1BP1LA0JNW5 1464 aa20.2■□□□□ 0.82
VMP1-202ENST00000585847 ABCC2Q92887 1545 aa20.19■□□□□ 0.82
VMP1-202ENST00000585847 FAM69CQ0P6D2 419 aa20.18■□□□□ 0.82
VMP1-202ENST00000585847 RAPGEF6Q8TEU7 1601 aa20.16■□□□□ 0.82
VMP1-202ENST00000585847 ABCC10Q5T3U5 1492 aa20.16■□□□□ 0.82
VMP1-202ENST00000585847 MAPKBP1O60336 1514 aa20.14■□□□□ 0.81
VMP1-202ENST00000585847 FMN1Q68DA7 1419 aa20.13■□□□□ 0.81
VMP1-202ENST00000585847 KDM5BQ9UGL1 1544 aa20.12■□□□□ 0.81
VMP1-202ENST00000585847 NUP153P49790 1475 aaKnown RBP20.11■□□□□ 0.81
VMP1-202ENST00000585847 DIP2BQ9P265 1576 aa20.11■□□□□ 0.81
VMP1-202ENST00000585847 PCF11O94913 1555 aaKnown RBP20.1■□□□□ 0.81
VMP1-202ENST00000585847 LRRIQ1Q96JM4 1722 aa20.09■□□□□ 0.81
VMP1-202ENST00000585847 ZCCHC11Q5TAX3 1644 aaKnown RBP20.09■□□□□ 0.81
VMP1-202ENST00000585847 ATP10BO94823 1461 aa20.07■□□□□ 0.8
VMP1-202ENST00000585847 CASKIN1Q8WXD9 1431 aa20.06■□□□□ 0.8
VMP1-202ENST00000585847 KDM6BO15054 1643 aa20.04■□□□□ 0.8
VMP1-202ENST00000585847 HECW1Q76N89 1606 aa20.04■□□□□ 0.8
VMP1-202ENST00000585847 VPS8Q8N3P4 1428 aa20.03■□□□□ 0.8
VMP1-202ENST00000585847 TSPOAP1O95153 1857 aa20.03■□□□□ 0.8
VMP1-202ENST00000585847 CDK13Q14004 1512 aaKnown RBP20.02■□□□□ 0.79
VMP1-202ENST00000585847 FYCO1Q9BQS8 1478 aa20.01■□□□□ 0.79
VMP1-202ENST00000585847 ARID3CA6NKF2 412 aa20.01■□□□□ 0.79
VMP1-202ENST00000585847 EPRSP07814 1512 aaKnown RBP20■□□□□ 0.79
VMP1-202ENST00000585847 ASXL2Q76L83 1435 aa19.97■□□□□ 0.79
VMP1-202ENST00000585847 ATP1B4Q9UN42 357 aaPredicted RBP19.94■□□□□ 0.78
VMP1-202ENST00000585847 CCDC18Q5T9S5 1454 aa19.91■□□□□ 0.78
VMP1-202ENST00000585847 WDR7Q9Y4E6 1490 aa19.91■□□□□ 0.78
VMP1-202ENST00000585847 MAGI3Q5TCQ9 1506 aa19.91■□□□□ 0.78
VMP1-202ENST00000585847 CFAP43Q8NDM7 1665 aa19.87■□□□□ 0.77
VMP1-202ENST00000585847 KDM4FA0A1W2PPD8 638 aa19.87■□□□□ 0.77
VMP1-202ENST00000585847 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.86■□□□□ 0.77
VMP1-202ENST00000585847 HNRNPUL2Q1KMD3 747 aaKnown RBP19.86■□□□□ 0.77
VMP1-202ENST00000585847 TIAM1Q13009 1591 aa19.85■□□□□ 0.77
VMP1-202ENST00000585847 GLI2P10070 1586 aa19.83■□□□□ 0.77
VMP1-202ENST00000585847 MAP3K1Q13233 1512 aa19.82■□□□□ 0.76
VMP1-202ENST00000585847 PLEKHD1A6NEE1 506 aa19.82■□□□□ 0.76
VMP1-202ENST00000585847 TROQ12816 1431 aaPredicted RBP19.82■□□□□ 0.76
VMP1-202ENST00000585847 PPRC1Q5VV67 1664 aaKnown RBP19.79■□□□□ 0.76
VMP1-202ENST00000585847 KCNH8Q96L42 1107 aa19.79■□□□□ 0.76
VMP1-202ENST00000585847 KIF14Q15058 1648 aa19.79■□□□□ 0.76
VMP1-202ENST00000585847 KANK4Q5T7N3 995 aaPredicted RBP19.77■□□□□ 0.76
VMP1-202ENST00000585847 CDK11AQ9UQ88 783 aaPredicted RBP19.77■□□□□ 0.76
VMP1-202ENST00000585847 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.76■□□□□ 0.75
VMP1-202ENST00000585847 ABCA9Q8IUA7 1624 aa19.76■□□□□ 0.75
VMP1-202ENST00000585847 MAP3K4Q9Y6R4 1608 aa19.76■□□□□ 0.75
VMP1-202ENST00000585847 LRRC9Q6ZRR7 1453 aa19.75■□□□□ 0.75
VMP1-202ENST00000585847 TTC37Q6PGP7 1564 aa19.74■□□□□ 0.75
VMP1-202ENST00000585847 EHBP1L1Q8N3D4 1523 aa19.74■□□□□ 0.75
VMP1-202ENST00000585847 TEX14Q8IWB6 1497 aa19.73■□□□□ 0.75
VMP1-202ENST00000585847 MTUS2Q5JR59 1369 aa19.71■□□□□ 0.75
VMP1-202ENST00000585847 ADGRL1O94910 1474 aa19.71■□□□□ 0.75
VMP1-202ENST00000585847 CD109Q6YHK3 1445 aa19.68■□□□□ 0.74
VMP1-202ENST00000585847 CDC42BPAQ5VT25 1732 aa19.65■□□□□ 0.74
VMP1-202ENST00000585847 SUPT6HQ7KZ85 1726 aaKnown RBP19.65■□□□□ 0.74
VMP1-202ENST00000585847 COL17A1Q9UMD9 1497 aaPredicted RBP19.65■□□□□ 0.74
VMP1-202ENST00000585847 APLP2Q06481 763 aa19.64■□□□□ 0.73
VMP1-202ENST00000585847 NCOA2Q15596 1464 aa19.64■□□□□ 0.73
VMP1-202ENST00000585847 CDC42BPBQ9Y5S2 1711 aa19.64■□□□□ 0.73
VMP1-202ENST00000585847 MYO5CQ9NQX4 1742 aa19.63■□□□□ 0.73
VMP1-202ENST00000585847 PLCH2O75038 1416 aa19.62■□□□□ 0.73
VMP1-202ENST00000585847 GPATCH8Q9UKJ3 1502 aaKnown RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms