RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 KIAA0586Q9BVV6 1533 aa26.08■■□□□ 1.77
CLIP3-202ENST00000585466 PRG4Q92954 1404 aaPredicted RBP26.07■■□□□ 1.76
CLIP3-202ENST00000585466 JPH4Q96JJ6 628 aa26.06■■□□□ 1.76
CLIP3-202ENST00000585466 RAPGEF2Q9Y4G8 1499 aa25.93■■□□□ 1.74
CLIP3-202ENST00000585466 IQGAP2Q13576 1575 aa25.9■■□□□ 1.74
CLIP3-202ENST00000585466 PRXQ9BXM0 1461 aa25.85■■□□□ 1.73
CLIP3-202ENST00000585466 TRHP20396 242 aaPredicted RBP25.82■■□□□ 1.72
CLIP3-202ENST00000585466 ADCY10Q96PN6 1610 aa25.8■■□□□ 1.72
CLIP3-202ENST00000585466 DISP1Q96F81 1524 aa25.78■■□□□ 1.72
CLIP3-202ENST00000585466 UGGT2Q9NYU1 1516 aa25.78■■□□□ 1.72
CLIP3-202ENST00000585466 CTTNBP2Q8WZ74 1663 aa25.77■■□□□ 1.72
CLIP3-202ENST00000585466 CARMIL2Q6F5E8 1435 aa25.71■■□□□ 1.71
CLIP3-202ENST00000585466 TNIKQ9UKE5 1360 aa25.7■■□□□ 1.71
CLIP3-202ENST00000585466 KIAA0556O60303 1618 aa25.69■■□□□ 1.7
CLIP3-202ENST00000585466 PTPRGP23470 1445 aa25.69■■□□□ 1.7
CLIP3-202ENST00000585466 KIF13AQ9H1H9 1805 aa25.67■■□□□ 1.7
CLIP3-202ENST00000585466 MAPKBP1O60336 1514 aa25.66■■□□□ 1.7
CLIP3-202ENST00000585466 EEA1Q15075 1411 aa25.64■■□□□ 1.7
CLIP3-202ENST00000585466 CSRNP3Q8WYN3 585 aa25.64■■□□□ 1.7
CLIP3-202ENST00000585466 CHIC1Q5VXU3 224 aa25.6■■□□□ 1.69
CLIP3-202ENST00000585466 UHRF1BP1LA0JNW5 1464 aa25.59■■□□□ 1.69
CLIP3-202ENST00000585466 ABCC2Q92887 1545 aa25.56■■□□□ 1.68
CLIP3-202ENST00000585466 ABCC10Q5T3U5 1492 aa25.55■■□□□ 1.68
CLIP3-202ENST00000585466 DIP2BQ9P265 1576 aa25.55■■□□□ 1.68
CLIP3-202ENST00000585466 UACAQ9BZF9 1416 aa25.54■■□□□ 1.68
CLIP3-202ENST00000585466 TTBK1Q5TCY1 1321 aaPredicted RBP25.53■■□□□ 1.68
CLIP3-202ENST00000585466 GOLGA3Q08378 1498 aa25.51■■□□□ 1.67
CLIP3-202ENST00000585466 NPM1P06748 294 aaKnown RBP eCLIP25.5■■□□□ 1.67
CLIP3-202ENST00000585466 KIF21BO75037 1637 aa25.49■■□□□ 1.67
CLIP3-202ENST00000585466 KDM5BQ9UGL1 1544 aa25.47■■□□□ 1.67
CLIP3-202ENST00000585466 SAMD9Q5K651 1589 aa25.46■■□□□ 1.67
CLIP3-202ENST00000585466 FAM9AQ8IZU1 332 aaPredicted RBP25.45■■□□□ 1.66
CLIP3-202ENST00000585466 ABCA8O94911 1581 aa25.44■■□□□ 1.66
CLIP3-202ENST00000585466 PLB1Q6P1J6 1458 aa25.44■■□□□ 1.66
CLIP3-202ENST00000585466 ZCCHC11Q5TAX3 1644 aaKnown RBP25.42■■□□□ 1.66
CLIP3-202ENST00000585466 ASXL2Q76L83 1435 aa25.41■■□□□ 1.66
CLIP3-202ENST00000585466 FAM69CQ0P6D2 419 aa25.41■■□□□ 1.66
CLIP3-202ENST00000585466 GLI2P10070 1586 aa25.35■■□□□ 1.65
CLIP3-202ENST00000585466 PPRC1Q5VV67 1664 aaKnown RBP25.29■■□□□ 1.64
CLIP3-202ENST00000585466 EPRSP07814 1512 aaKnown RBP25.29■■□□□ 1.64
CLIP3-202ENST00000585466 TSPOAP1O95153 1857 aa25.29■■□□□ 1.64
CLIP3-202ENST00000585466 P3H3Q8IVL6 736 aa25.28■■□□□ 1.64
CLIP3-202ENST00000585466 WDR7Q9Y4E6 1490 aa25.24■■□□□ 1.63
CLIP3-202ENST00000585466 MAP3K4Q9Y6R4 1608 aa25.23■■□□□ 1.63
CLIP3-202ENST00000585466 EFCAB5A4FU69 1503 aa25.22■■□□□ 1.63
CLIP3-202ENST00000585466 FHOD3Q2V2M9 1422 aa25.22■■□□□ 1.63
CLIP3-202ENST00000585466 RAPGEF6Q8TEU7 1601 aa25.21■■□□□ 1.63
CLIP3-202ENST00000585466 ATP10BO94823 1461 aa25.19■■□□□ 1.62
CLIP3-202ENST00000585466 NUP153P49790 1475 aaKnown RBP25.15■■□□□ 1.62
CLIP3-202ENST00000585466 RANGAP1P46060 587 aaPredicted RBP25.14■■□□□ 1.62
CLIP3-202ENST00000585466 KDM6BO15054 1643 aa25.14■■□□□ 1.61
CLIP3-202ENST00000585466 EHMT2Q96KQ7 1210 aa25.11■■□□□ 1.61
CLIP3-202ENST00000585466 ARHGAP35Q9NRY4 1499 aa25.09■■□□□ 1.61
CLIP3-202ENST00000585466 UBTFP17480 764 aaKnown RBP25.09■■□□□ 1.61
CLIP3-202ENST00000585466 CFAP43Q8NDM7 1665 aa25.08■■□□□ 1.61
CLIP3-202ENST00000585466 ARID3CA6NKF2 412 aa25.07■■□□□ 1.6
CLIP3-202ENST00000585466 COL17A1Q9UMD9 1497 aaPredicted RBP25.04■■□□□ 1.6
CLIP3-202ENST00000585466 MAGI3Q5TCQ9 1506 aa25.02■■□□□ 1.6
CLIP3-202ENST00000585466 TEX14Q8IWB6 1497 aa25.02■■□□□ 1.6
CLIP3-202ENST00000585466 KCNH8Q96L42 1107 aa25■■□□□ 1.59
CLIP3-202ENST00000585466 ABCA9Q8IUA7 1624 aa25■■□□□ 1.59
CLIP3-202ENST00000585466 CD109Q6YHK3 1445 aa24.99■■□□□ 1.59
CLIP3-202ENST00000585466 FMN1Q68DA7 1419 aa24.93■■□□□ 1.58
CLIP3-202ENST00000585466 CDK13Q14004 1512 aaKnown RBP24.92■■□□□ 1.58
CLIP3-202ENST00000585466 HECW1Q76N89 1606 aa24.9■■□□□ 1.58
CLIP3-202ENST00000585466 LRRIQ1Q96JM4 1722 aa24.89■■□□□ 1.57
CLIP3-202ENST00000585466 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.85■■□□□ 1.57
CLIP3-202ENST00000585466 HNRNPUL2Q1KMD3 747 aaKnown RBP24.85■■□□□ 1.57
CLIP3-202ENST00000585466 AEBP2Q6ZN18 517 aaPredicted RBP24.84■■□□□ 1.57
CLIP3-202ENST00000585466 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.82■■□□□ 1.56
CLIP3-202ENST00000585466 ARAP3Q8WWN8 1544 aa24.82■■□□□ 1.56
CLIP3-202ENST00000585466 PCF11O94913 1555 aaKnown RBP24.81■■□□□ 1.56
CLIP3-202ENST00000585466 TTC37Q6PGP7 1564 aa24.81■■□□□ 1.56
CLIP3-202ENST00000585466 PLEKHD1A6NEE1 506 aa24.8■■□□□ 1.56
CLIP3-202ENST00000585466 CLIP1P30622 1438 aa24.78■■□□□ 1.56
CLIP3-202ENST00000585466 CASKIN1Q8WXD9 1431 aa24.77■■□□□ 1.56
CLIP3-202ENST00000585466 NEO1Q92859 1461 aa24.77■■□□□ 1.56
CLIP3-202ENST00000585466 PHLDB1Q86UU1 1377 aa24.73■■□□□ 1.55
CLIP3-202ENST00000585466 FRMPD1Q5SYB0 1578 aa24.72■■□□□ 1.55
CLIP3-202ENST00000585466 KIF14Q15058 1648 aa24.72■■□□□ 1.55
CLIP3-202ENST00000585466 KDM4FA0A1W2PPD8 638 aa24.71■■□□□ 1.55
CLIP3-202ENST00000585466 FYCO1Q9BQS8 1478 aa24.69■■□□□ 1.54
CLIP3-202ENST00000585466 ATP1B4Q9UN42 357 aaPredicted RBP24.68■■□□□ 1.54
CLIP3-202ENST00000585466 TROQ12816 1431 aaPredicted RBP24.68■■□□□ 1.54
CLIP3-202ENST00000585466 CCDC18Q5T9S5 1454 aa24.66■■□□□ 1.54
CLIP3-202ENST00000585466 FANCAO15360 1455 aa24.65■■□□□ 1.54
CLIP3-202ENST00000585466 CFAP74Q9C0B2 1584 aa24.65■■□□□ 1.54
CLIP3-202ENST00000585466 RICTORQ6R327 1708 aa24.64■■□□□ 1.53
CLIP3-202ENST00000585466 PLCH2O75038 1416 aa24.63■■□□□ 1.53
CLIP3-202ENST00000585466 CEP162Q5TB80 1403 aa24.62■■□□□ 1.53
CLIP3-202ENST00000585466 AKNAQ7Z591 1439 aa24.62■■□□□ 1.53
CLIP3-202ENST00000585466 MYO5CQ9NQX4 1742 aa24.62■■□□□ 1.53
CLIP3-202ENST00000585466 ADGRL1O94910 1474 aa24.62■■□□□ 1.53
CLIP3-202ENST00000585466 RAPGEF3O95398 923 aa24.61■■□□□ 1.53
CLIP3-202ENST00000585466 CDK11AQ9UQ88 783 aaPredicted RBP24.6■■□□□ 1.53
CLIP3-202ENST00000585466 DENND4BO75064 1496 aaPredicted RBP24.56■■□□□ 1.52
CLIP3-202ENST00000585466 ZMYM4Q5VZL5 1548 aa24.54■■□□□ 1.52
CLIP3-202ENST00000585466 CDC42BPBQ9Y5S2 1711 aa24.53■■□□□ 1.52
CLIP3-202ENST00000585466 LOC105371045A0A1W2PR82 267 aa24.53■■□□□ 1.52
CLIP3-202ENST00000585466 ARHGEF40Q8TER5 1519 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms