RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 JPH4Q96JJ6 628 aa16.79■□□□□ 0.28
LIG3-203ENST00000585370 PRG4Q92954 1404 aaPredicted RBP16.76■□□□□ 0.27
LIG3-203ENST00000585370 CSRNP3Q8WYN3 585 aa16.74■□□□□ 0.27
LIG3-203ENST00000585370 IGF1RP08069 1367 aa16.72■□□□□ 0.27
LIG3-203ENST00000585370 RUSC2Q8N2Y8 1516 aa16.67■□□□□ 0.26
LIG3-203ENST00000585370 KIF27Q86VH2 1401 aa16.67■□□□□ 0.26
LIG3-203ENST00000585370 KIAA0586Q9BVV6 1533 aa16.62■□□□□ 0.25
LIG3-203ENST00000585370 NPM1P06748 294 aaKnown RBP eCLIP16.58■□□□□ 0.24
LIG3-203ENST00000585370 CARMIL1Q5VZK9 1371 aa16.58■□□□□ 0.24
LIG3-203ENST00000585370 CUL7Q14999 1698 aa16.58■□□□□ 0.24
LIG3-203ENST00000585370 KIF13AQ9H1H9 1805 aa16.58■□□□□ 0.24
LIG3-203ENST00000585370 AEBP2Q6ZN18 517 aaPredicted RBP16.57■□□□□ 0.24
LIG3-203ENST00000585370 FAM69CQ0P6D2 419 aa16.56■□□□□ 0.24
LIG3-203ENST00000585370 TNIKQ9UKE5 1360 aa16.55■□□□□ 0.24
LIG3-203ENST00000585370 ADCY10Q96PN6 1610 aa16.55■□□□□ 0.24
LIG3-203ENST00000585370 GOLGA3Q08378 1498 aa16.54■□□□□ 0.24
LIG3-203ENST00000585370 ABCC10Q5T3U5 1492 aa16.54■□□□□ 0.24
LIG3-203ENST00000585370 KIF21BO75037 1637 aa16.52■□□□□ 0.24
LIG3-203ENST00000585370 MAPKBP1O60336 1514 aa16.52■□□□□ 0.24
LIG3-203ENST00000585370 UBTFP17480 764 aaKnown RBP16.5■□□□□ 0.23
LIG3-203ENST00000585370 PTPRGP23470 1445 aa16.49■□□□□ 0.23
LIG3-203ENST00000585370 TTBK1Q5TCY1 1321 aaPredicted RBP16.48■□□□□ 0.23
LIG3-203ENST00000585370 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
LIG3-203ENST00000585370 DIP2BQ9P265 1576 aa16.47■□□□□ 0.23
LIG3-203ENST00000585370 PRXQ9BXM0 1461 aa16.45■□□□□ 0.22
LIG3-203ENST00000585370 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
LIG3-203ENST00000585370 IQGAP2Q13576 1575 aa16.43■□□□□ 0.22
LIG3-203ENST00000585370 RAPGEF2Q9Y4G8 1499 aa16.4■□□□□ 0.22
LIG3-203ENST00000585370 DISP1Q96F81 1524 aa16.4■□□□□ 0.22
LIG3-203ENST00000585370 ABCC2Q92887 1545 aa16.39■□□□□ 0.21
LIG3-203ENST00000585370 CEP162Q5TB80 1403 aa16.38■□□□□ 0.21
LIG3-203ENST00000585370 UACAQ9BZF9 1416 aa16.36■□□□□ 0.21
LIG3-203ENST00000585370 TSPOAP1O95153 1857 aa16.36■□□□□ 0.21
LIG3-203ENST00000585370 ASXL2Q76L83 1435 aa16.36■□□□□ 0.21
LIG3-203ENST00000585370 UHRF1BP1LA0JNW5 1464 aa16.35■□□□□ 0.21
LIG3-203ENST00000585370 UGGT2Q9NYU1 1516 aa16.35■□□□□ 0.21
LIG3-203ENST00000585370 PLB1Q6P1J6 1458 aa16.32■□□□□ 0.2
LIG3-203ENST00000585370 KDM6BO15054 1643 aa16.31■□□□□ 0.2
LIG3-203ENST00000585370 GLI2P10070 1586 aa16.29■□□□□ 0.2
LIG3-203ENST00000585370 KDM5BQ9UGL1 1544 aa16.29■□□□□ 0.2
LIG3-203ENST00000585370 CLIP1P30622 1438 aa16.28■□□□□ 0.2
LIG3-203ENST00000585370 KIAA0556O60303 1618 aa16.27■□□□□ 0.2
LIG3-203ENST00000585370 KDM4FA0A1W2PPD8 638 aa16.27■□□□□ 0.2
LIG3-203ENST00000585370 PPRC1Q5VV67 1664 aaKnown RBP16.25■□□□□ 0.19
LIG3-203ENST00000585370 EPRSP07814 1512 aaKnown RBP16.24■□□□□ 0.19
LIG3-203ENST00000585370 ZCCHC11Q5TAX3 1644 aaKnown RBP16.23■□□□□ 0.19
LIG3-203ENST00000585370 TRIM26Q12899 539 aaPredicted RBP16.22■□□□□ 0.19
LIG3-203ENST00000585370 COL17A1Q9UMD9 1497 aaPredicted RBP16.21■□□□□ 0.19
LIG3-203ENST00000585370 CTTNBP2Q8WZ74 1663 aa16.21■□□□□ 0.18
LIG3-203ENST00000585370 MAP3K4Q9Y6R4 1608 aa16.19■□□□□ 0.18
LIG3-203ENST00000585370 WDR7Q9Y4E6 1490 aa16.16■□□□□ 0.18
LIG3-203ENST00000585370 ABCA8O94911 1581 aa16.16■□□□□ 0.18
LIG3-203ENST00000585370 VPS8Q8N3P4 1428 aa16.15■□□□□ 0.18
LIG3-203ENST00000585370 KCNH8Q96L42 1107 aa16.14■□□□□ 0.17
LIG3-203ENST00000585370 TEX14Q8IWB6 1497 aa16.14■□□□□ 0.17
LIG3-203ENST00000585370 P3H3Q8IVL6 736 aa16.13■□□□□ 0.17
LIG3-203ENST00000585370 PCGF6Q9BYE7 350 aa16.12■□□□□ 0.17
LIG3-203ENST00000585370 APLP2Q06481 763 aa16.1■□□□□ 0.17
LIG3-203ENST00000585370 CD109Q6YHK3 1445 aa16.1■□□□□ 0.17
LIG3-203ENST00000585370 ARID3CA6NKF2 412 aa16.08■□□□□ 0.16
LIG3-203ENST00000585370 RANGAP1P46060 587 aaPredicted RBP16.07■□□□□ 0.16
LIG3-203ENST00000585370 MAGI3Q5TCQ9 1506 aa16.07■□□□□ 0.16
LIG3-203ENST00000585370 ATP10BO94823 1461 aa16.06■□□□□ 0.16
LIG3-203ENST00000585370 ADGRL1O94910 1474 aa16.06■□□□□ 0.16
LIG3-203ENST00000585370 ARHGAP35Q9NRY4 1499 aa16.05■□□□□ 0.16
LIG3-203ENST00000585370 CFAP43Q8NDM7 1665 aa16.04■□□□□ 0.16
LIG3-203ENST00000585370 EFCAB5A4FU69 1503 aa16.02■□□□□ 0.15
LIG3-203ENST00000585370 SAMD9Q5K651 1589 aa16.01■□□□□ 0.15
LIG3-203ENST00000585370 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.95■□□□□ 0.14
LIG3-203ENST00000585370 HNRNPUL2Q1KMD3 747 aaKnown RBP15.95■□□□□ 0.14
LIG3-203ENST00000585370 PPARGC1BQ86YN6 1023 aaKnown RBP15.95■□□□□ 0.14
LIG3-203ENST00000585370 ARAP3Q8WWN8 1544 aa15.94■□□□□ 0.14
LIG3-203ENST00000585370 RAPGEF6Q8TEU7 1601 aa15.94■□□□□ 0.14
LIG3-203ENST00000585370 FHOD3Q2V2M9 1422 aa15.94■□□□□ 0.14
LIG3-203ENST00000585370 NUP153P49790 1475 aaKnown RBP15.93■□□□□ 0.14
LIG3-203ENST00000585370 ABCA9Q8IUA7 1624 aa15.93■□□□□ 0.14
LIG3-203ENST00000585370 MAP3K1Q13233 1512 aa15.92■□□□□ 0.14
LIG3-203ENST00000585370 FMN1Q68DA7 1419 aa15.92■□□□□ 0.14
LIG3-203ENST00000585370 PHLDB1Q86UU1 1377 aa15.91■□□□□ 0.14
LIG3-203ENST00000585370 RAPGEF3O95398 923 aa15.91■□□□□ 0.14
LIG3-203ENST00000585370 PLEKHD1A6NEE1 506 aa15.87■□□□□ 0.13
LIG3-203ENST00000585370 NEO1Q92859 1461 aa15.86■□□□□ 0.13
LIG3-203ENST00000585370 CASKIN1Q8WXD9 1431 aa15.85■□□□□ 0.13
LIG3-203ENST00000585370 HECW2Q9P2P5 1572 aa15.84■□□□□ 0.13
LIG3-203ENST00000585370 FYCO1Q9BQS8 1478 aa15.84■□□□□ 0.13
LIG3-203ENST00000585370 ILDR1Q86SU0 546 aaPredicted RBP15.8■□□□□ 0.12
LIG3-203ENST00000585370 FRMPD1Q5SYB0 1578 aa15.79■□□□□ 0.12
LIG3-203ENST00000585370 KANK4Q5T7N3 995 aaPredicted RBP15.79■□□□□ 0.12
LIG3-203ENST00000585370 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIG3-203ENST00000585370 AKNAQ7Z591 1439 aa15.78■□□□□ 0.12
LIG3-203ENST00000585370 TIAM1Q13009 1591 aa15.77■□□□□ 0.11
LIG3-203ENST00000585370 HRCP23327 699 aa15.76■□□□□ 0.11
LIG3-203ENST00000585370 CDK13Q14004 1512 aaKnown RBP15.76■□□□□ 0.11
LIG3-203ENST00000585370 FANCAO15360 1455 aa15.76■□□□□ 0.11
LIG3-203ENST00000585370 DENND4BO75064 1496 aaPredicted RBP15.76■□□□□ 0.11
LIG3-203ENST00000585370 ADAMTSL3P82987 1691 aa15.76■□□□□ 0.11
LIG3-203ENST00000585370 ARID4BQ4LE39 1312 aaPredicted RBP15.75■□□□□ 0.11
LIG3-203ENST00000585370 ATP1B4Q9UN42 357 aaPredicted RBP15.75■□□□□ 0.11
LIG3-203ENST00000585370 PTPRMP28827 1452 aa15.75■□□□□ 0.11
LIG3-203ENST00000585370 PCF11O94913 1555 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms