RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 JPH4Q96JJ6 628 aa25.3■■□□□ 1.64
SS18-212ENST00000579061 KIAA0586Q9BVV6 1533 aa25.28■■□□□ 1.64
SS18-212ENST00000579061 PRG4Q92954 1404 aaPredicted RBP25.26■■□□□ 1.63
SS18-212ENST00000579061 RAPGEF2Q9Y4G8 1499 aa25.18■■□□□ 1.62
SS18-212ENST00000579061 IQGAP2Q13576 1575 aa25.1■■□□□ 1.61
SS18-212ENST00000579061 TRHP20396 242 aaPredicted RBP25.06■■□□□ 1.6
SS18-212ENST00000579061 PRXQ9BXM0 1461 aa25.04■■□□□ 1.6
SS18-212ENST00000579061 CARMIL2Q6F5E8 1435 aa25.03■■□□□ 1.6
SS18-212ENST00000579061 EEA1Q15075 1411 aa24.99■■□□□ 1.59
SS18-212ENST00000579061 CTTNBP2Q8WZ74 1663 aa24.98■■□□□ 1.59
SS18-212ENST00000579061 UGGT2Q9NYU1 1516 aa24.97■■□□□ 1.59
SS18-212ENST00000579061 CSRNP3Q8WYN3 585 aa24.95■■□□□ 1.58
SS18-212ENST00000579061 TNIKQ9UKE5 1360 aa24.94■■□□□ 1.58
SS18-212ENST00000579061 PTPRGP23470 1445 aa24.94■■□□□ 1.58
SS18-212ENST00000579061 DISP1Q96F81 1524 aa24.92■■□□□ 1.58
SS18-212ENST00000579061 ADCY10Q96PN6 1610 aa24.91■■□□□ 1.58
SS18-212ENST00000579061 CHIC1Q5VXU3 224 aa24.89■■□□□ 1.58
SS18-212ENST00000579061 NPM1P06748 294 aaKnown RBP eCLIP24.87■■□□□ 1.57
SS18-212ENST00000579061 KIAA0556O60303 1618 aa24.86■■□□□ 1.57
SS18-212ENST00000579061 MAPKBP1O60336 1514 aa24.83■■□□□ 1.57
SS18-212ENST00000579061 GOLGA3Q08378 1498 aa24.82■■□□□ 1.56
SS18-212ENST00000579061 UHRF1BP1LA0JNW5 1464 aa24.79■■□□□ 1.56
SS18-212ENST00000579061 UACAQ9BZF9 1416 aa24.78■■□□□ 1.56
SS18-212ENST00000579061 KIF13AQ9H1H9 1805 aa24.77■■□□□ 1.56
SS18-212ENST00000579061 TTBK1Q5TCY1 1321 aaPredicted RBP24.77■■□□□ 1.56
SS18-212ENST00000579061 ABCC2Q92887 1545 aa24.76■■□□□ 1.55
SS18-212ENST00000579061 KIF21BO75037 1637 aa24.73■■□□□ 1.55
SS18-212ENST00000579061 ABCC10Q5T3U5 1492 aa24.73■■□□□ 1.55
SS18-212ENST00000579061 FAM9AQ8IZU1 332 aaPredicted RBP24.72■■□□□ 1.55
SS18-212ENST00000579061 DIP2BQ9P265 1576 aa24.67■■□□□ 1.54
SS18-212ENST00000579061 KDM5BQ9UGL1 1544 aa24.66■■□□□ 1.54
SS18-212ENST00000579061 FAM69CQ0P6D2 419 aa24.65■■□□□ 1.54
SS18-212ENST00000579061 SAMD9Q5K651 1589 aa24.63■■□□□ 1.53
SS18-212ENST00000579061 PLB1Q6P1J6 1458 aa24.63■■□□□ 1.53
SS18-212ENST00000579061 ABCA8O94911 1581 aa24.62■■□□□ 1.53
SS18-212ENST00000579061 ASXL2Q76L83 1435 aa24.6■■□□□ 1.53
SS18-212ENST00000579061 ZCCHC11Q5TAX3 1644 aaKnown RBP24.59■■□□□ 1.53
SS18-212ENST00000579061 GLI2P10070 1586 aa24.54■■□□□ 1.52
SS18-212ENST00000579061 P3H3Q8IVL6 736 aa24.53■■□□□ 1.52
SS18-212ENST00000579061 EFCAB5A4FU69 1503 aa24.5■■□□□ 1.51
SS18-212ENST00000579061 TSPOAP1O95153 1857 aa24.47■■□□□ 1.51
SS18-212ENST00000579061 EPRSP07814 1512 aaKnown RBP24.47■■□□□ 1.51
SS18-212ENST00000579061 UBTFP17480 764 aaKnown RBP24.46■■□□□ 1.51
SS18-212ENST00000579061 WDR7Q9Y4E6 1490 aa24.45■■□□□ 1.51
SS18-212ENST00000579061 RAPGEF6Q8TEU7 1601 aa24.44■■□□□ 1.5
SS18-212ENST00000579061 RANGAP1P46060 587 aaPredicted RBP24.42■■□□□ 1.5
SS18-212ENST00000579061 FHOD3Q2V2M9 1422 aa24.42■■□□□ 1.5
SS18-212ENST00000579061 MAP3K4Q9Y6R4 1608 aa24.39■■□□□ 1.5
SS18-212ENST00000579061 ATP10BO94823 1461 aa24.39■■□□□ 1.5
SS18-212ENST00000579061 PPRC1Q5VV67 1664 aaKnown RBP24.39■■□□□ 1.49
SS18-212ENST00000579061 EHMT2Q96KQ7 1210 aa24.37■■□□□ 1.49
SS18-212ENST00000579061 KDM6BO15054 1643 aa24.34■■□□□ 1.49
SS18-212ENST00000579061 NUP153P49790 1475 aaKnown RBP24.32■■□□□ 1.48
SS18-212ENST00000579061 CFAP43Q8NDM7 1665 aa24.31■■□□□ 1.48
SS18-212ENST00000579061 TEX14Q8IWB6 1497 aa24.31■■□□□ 1.48
SS18-212ENST00000579061 ARHGAP35Q9NRY4 1499 aa24.3■■□□□ 1.48
SS18-212ENST00000579061 ARID3CA6NKF2 412 aa24.28■■□□□ 1.48
SS18-212ENST00000579061 KCNH8Q96L42 1107 aa24.28■■□□□ 1.48
SS18-212ENST00000579061 FMN1Q68DA7 1419 aa24.27■■□□□ 1.48
SS18-212ENST00000579061 CD109Q6YHK3 1445 aa24.25■■□□□ 1.47
SS18-212ENST00000579061 MAGI3Q5TCQ9 1506 aa24.25■■□□□ 1.47
SS18-212ENST00000579061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.23■■□□□ 1.47
SS18-212ENST00000579061 HNRNPUL2Q1KMD3 747 aaKnown RBP24.23■■□□□ 1.47
SS18-212ENST00000579061 ABCA9Q8IUA7 1624 aa24.21■■□□□ 1.47
SS18-212ENST00000579061 HECW1Q76N89 1606 aa24.17■■□□□ 1.46
SS18-212ENST00000579061 PLEKHD1A6NEE1 506 aa24.16■■□□□ 1.46
SS18-212ENST00000579061 COL17A1Q9UMD9 1497 aaPredicted RBP24.13■■□□□ 1.45
SS18-212ENST00000579061 CDK13Q14004 1512 aaKnown RBP24.1■■□□□ 1.45
SS18-212ENST00000579061 PHLDB1Q86UU1 1377 aa24.08■■□□□ 1.45
SS18-212ENST00000579061 CLIP1P30622 1438 aa24.08■■□□□ 1.44
SS18-212ENST00000579061 ATP1B4Q9UN42 357 aaPredicted RBP24.06■■□□□ 1.44
SS18-212ENST00000579061 ARAP3Q8WWN8 1544 aa24.05■■□□□ 1.44
SS18-212ENST00000579061 CASKIN1Q8WXD9 1431 aa24.04■■□□□ 1.44
SS18-212ENST00000579061 CDK11AQ9UQ88 783 aaPredicted RBP24.04■■□□□ 1.44
SS18-212ENST00000579061 NEO1Q92859 1461 aa24.03■■□□□ 1.44
SS18-212ENST00000579061 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.03■■□□□ 1.44
SS18-212ENST00000579061 LRRIQ1Q96JM4 1722 aa24.02■■□□□ 1.44
SS18-212ENST00000579061 PCF11O94913 1555 aaKnown RBP24.01■■□□□ 1.43
SS18-212ENST00000579061 CCDC18Q5T9S5 1454 aa23.98■■□□□ 1.43
SS18-212ENST00000579061 TTC37Q6PGP7 1564 aa23.97■■□□□ 1.43
SS18-212ENST00000579061 AEBP2Q6ZN18 517 aaPredicted RBP23.97■■□□□ 1.43
SS18-212ENST00000579061 FYCO1Q9BQS8 1478 aa23.97■■□□□ 1.43
SS18-212ENST00000579061 CFAP74Q9C0B2 1584 aa23.95■■□□□ 1.43
SS18-212ENST00000579061 TROQ12816 1431 aaPredicted RBP23.95■■□□□ 1.42
SS18-212ENST00000579061 KIF14Q15058 1648 aa23.92■■□□□ 1.42
SS18-212ENST00000579061 FANCAO15360 1455 aa23.91■■□□□ 1.42
SS18-212ENST00000579061 CEP162Q5TB80 1403 aa23.91■■□□□ 1.42
SS18-212ENST00000579061 PLCH2O75038 1416 aa23.9■■□□□ 1.42
SS18-212ENST00000579061 MYO5CQ9NQX4 1742 aa23.89■■□□□ 1.41
SS18-212ENST00000579061 AKNAQ7Z591 1439 aa23.88■■□□□ 1.41
SS18-212ENST00000579061 KDM4FA0A1W2PPD8 638 aa23.85■■□□□ 1.41
SS18-212ENST00000579061 DENND4BO75064 1496 aaPredicted RBP23.84■■□□□ 1.41
SS18-212ENST00000579061 FRMPD1Q5SYB0 1578 aa23.83■■□□□ 1.41
SS18-212ENST00000579061 RAPGEF3O95398 923 aa23.83■■□□□ 1.41
SS18-212ENST00000579061 RICTORQ6R327 1708 aa23.82■■□□□ 1.4
SS18-212ENST00000579061 LOC105371045A0A1W2PR82 267 aa23.82■■□□□ 1.4
SS18-212ENST00000579061 EFCAB2Q5VUJ9 269 aa23.8■■□□□ 1.4
SS18-212ENST00000579061 ADGRL1O94910 1474 aa23.79■■□□□ 1.4
SS18-212ENST00000579061 CDC42BPBQ9Y5S2 1711 aa23.76■■□□□ 1.39
SS18-212ENST00000579061 ZMYM4Q5VZL5 1548 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms