RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 RAPGEF2Q9Y4G8 1499 aa32.77■■■□□ 2.84
SS18-209ENST00000578595 KIAA0586Q9BVV6 1533 aa32.76■■■□□ 2.83
SS18-209ENST00000578595 PRG4Q92954 1404 aaPredicted RBP32.75■■■□□ 2.83
SS18-209ENST00000578595 JPH4Q96JJ6 628 aa32.72■■■□□ 2.83
SS18-209ENST00000578595 IQGAP2Q13576 1575 aa32.68■■■□□ 2.82
SS18-209ENST00000578595 CTTNBP2Q8WZ74 1663 aa32.66■■■□□ 2.82
SS18-209ENST00000578595 CHIC1Q5VXU3 224 aa32.64■■■□□ 2.82
SS18-209ENST00000578595 FAM9AQ8IZU1 332 aaPredicted RBP32.58■■■□□ 2.81
SS18-209ENST00000578595 EEA1Q15075 1411 aa32.58■■■□□ 2.81
SS18-209ENST00000578595 PRXQ9BXM0 1461 aa32.55■■■□□ 2.8
SS18-209ENST00000578595 CSRNP3Q8WYN3 585 aa32.53■■■□□ 2.8
SS18-209ENST00000578595 CARMIL2Q6F5E8 1435 aa32.48■■■□□ 2.79
SS18-209ENST00000578595 TTBK1Q5TCY1 1321 aaPredicted RBP32.46■■■□□ 2.79
SS18-209ENST00000578595 TRHP20396 242 aaPredicted RBP32.41■■■□□ 2.78
SS18-209ENST00000578595 UGGT2Q9NYU1 1516 aa32.4■■■□□ 2.78
SS18-209ENST00000578595 KIAA0556O60303 1618 aa32.36■■■□□ 2.77
SS18-209ENST00000578595 DISP1Q96F81 1524 aa32.34■■■□□ 2.77
SS18-209ENST00000578595 PTPRGP23470 1445 aa32.33■■■□□ 2.77
SS18-209ENST00000578595 KIF21BO75037 1637 aa32.33■■■□□ 2.77
SS18-209ENST00000578595 TNIKQ9UKE5 1360 aa32.32■■■□□ 2.77
SS18-209ENST00000578595 ADCY10Q96PN6 1610 aa32.31■■■□□ 2.76
SS18-209ENST00000578595 GOLGA3Q08378 1498 aa32.26■■■□□ 2.75
SS18-209ENST00000578595 EHMT2Q96KQ7 1210 aa32.25■■■□□ 2.75
SS18-209ENST00000578595 NPM1P06748 294 aaKnown RBP eCLIP32.23■■■□□ 2.75
SS18-209ENST00000578595 RANGAP1P46060 587 aaPredicted RBP32.16■■■□□ 2.74
SS18-209ENST00000578595 UACAQ9BZF9 1416 aa32.09■■■□□ 2.73
SS18-209ENST00000578595 ABCC2Q92887 1545 aa32.09■■■□□ 2.73
SS18-209ENST00000578595 KIF13AQ9H1H9 1805 aa32.09■■■□□ 2.73
SS18-209ENST00000578595 UBTFP17480 764 aaKnown RBP32.08■■■□□ 2.73
SS18-209ENST00000578595 P3H3Q8IVL6 736 aa32.08■■■□□ 2.73
SS18-209ENST00000578595 SAMD9Q5K651 1589 aa32.07■■■□□ 2.72
SS18-209ENST00000578595 MAPKBP1O60336 1514 aa32.06■■■□□ 2.72
SS18-209ENST00000578595 UHRF1BP1LA0JNW5 1464 aa32.03■■■□□ 2.72
SS18-209ENST00000578595 PLB1Q6P1J6 1458 aa32■■■□□ 2.71
SS18-209ENST00000578595 ZCCHC11Q5TAX3 1644 aaKnown RBP31.99■■■□□ 2.71
SS18-209ENST00000578595 ABCA8O94911 1581 aa31.94■■■□□ 2.7
SS18-209ENST00000578595 DIP2BQ9P265 1576 aa31.94■■■□□ 2.7
SS18-209ENST00000578595 EFCAB5A4FU69 1503 aa31.93■■■□□ 2.7
SS18-209ENST00000578595 FHOD3Q2V2M9 1422 aa31.91■■■□□ 2.7
SS18-209ENST00000578595 ABCC10Q5T3U5 1492 aa31.91■■■□□ 2.7
SS18-209ENST00000578595 KDM5BQ9UGL1 1544 aa31.9■■■□□ 2.7
SS18-209ENST00000578595 TSPOAP1O95153 1857 aa31.89■■■□□ 2.69
SS18-209ENST00000578595 FAM69CQ0P6D2 419 aa31.88■■■□□ 2.69
SS18-209ENST00000578595 ASXL2Q76L83 1435 aa31.88■■■□□ 2.69
SS18-209ENST00000578595 RAPGEF6Q8TEU7 1601 aa31.86■■■□□ 2.69
SS18-209ENST00000578595 ARID3CA6NKF2 412 aa31.81■■■□□ 2.68
SS18-209ENST00000578595 WDR7Q9Y4E6 1490 aa31.72■■■□□ 2.67
SS18-209ENST00000578595 ARHGAP35Q9NRY4 1499 aa31.71■■■□□ 2.67
SS18-209ENST00000578595 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.68■■■□□ 2.66
SS18-209ENST00000578595 HNRNPUL2Q1KMD3 747 aaKnown RBP31.68■■■□□ 2.66
SS18-209ENST00000578595 EPRSP07814 1512 aaKnown RBP31.67■■■□□ 2.66
SS18-209ENST00000578595 GLI2P10070 1586 aa31.67■■■□□ 2.66
SS18-209ENST00000578595 ATP10BO94823 1461 aa31.65■■■□□ 2.66
SS18-209ENST00000578595 NUP153P49790 1475 aaKnown RBP31.64■■■□□ 2.66
SS18-209ENST00000578595 FMN1Q68DA7 1419 aa31.61■■■□□ 2.65
SS18-209ENST00000578595 MAP3K4Q9Y6R4 1608 aa31.6■■■□□ 2.65
SS18-209ENST00000578595 KCNH8Q96L42 1107 aa31.6■■■□□ 2.65
SS18-209ENST00000578595 ATP1B4Q9UN42 357 aaPredicted RBP31.59■■■□□ 2.65
SS18-209ENST00000578595 HECW1Q76N89 1606 aa31.57■■■□□ 2.64
SS18-209ENST00000578595 PPRC1Q5VV67 1664 aaKnown RBP31.57■■■□□ 2.64
SS18-209ENST00000578595 CFAP43Q8NDM7 1665 aa31.55■■■□□ 2.64
SS18-209ENST00000578595 CLIP1P30622 1438 aa31.53■■■□□ 2.64
SS18-209ENST00000578595 KDM6BO15054 1643 aa31.53■■■□□ 2.64
SS18-209ENST00000578595 CDK13Q14004 1512 aaKnown RBP31.49■■■□□ 2.63
SS18-209ENST00000578595 PCF11O94913 1555 aaKnown RBP31.45■■■□□ 2.63
SS18-209ENST00000578595 TEX14Q8IWB6 1497 aa31.45■■■□□ 2.62
SS18-209ENST00000578595 LRRIQ1Q96JM4 1722 aa31.43■■■□□ 2.62
SS18-209ENST00000578595 CD109Q6YHK3 1445 aa31.41■■■□□ 2.62
SS18-209ENST00000578595 PLEKHD1A6NEE1 506 aa31.4■■■□□ 2.62
SS18-209ENST00000578595 ABCA9Q8IUA7 1624 aa31.39■■■□□ 2.62
SS18-209ENST00000578595 CEP162Q5TB80 1403 aa31.37■■■□□ 2.61
SS18-209ENST00000578595 LOC105371045A0A1W2PR82 267 aa31.35■■■□□ 2.61
SS18-209ENST00000578595 MAGI3Q5TCQ9 1506 aa31.32■■■□□ 2.6
SS18-209ENST00000578595 CASKIN1Q8WXD9 1431 aa31.32■■■□□ 2.6
SS18-209ENST00000578595 FYCO1Q9BQS8 1478 aa31.29■■■□□ 2.6
SS18-209ENST00000578595 CCDC18Q5T9S5 1454 aa31.27■■■□□ 2.6
SS18-209ENST00000578595 CDK11AQ9UQ88 783 aaPredicted RBP31.26■■■□□ 2.59
SS18-209ENST00000578595 TTC37Q6PGP7 1564 aa31.26■■■□□ 2.59
SS18-209ENST00000578595 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.23■■■□□ 2.59
SS18-209ENST00000578595 KIF14Q15058 1648 aa31.22■■■□□ 2.59
SS18-209ENST00000578595 MYO5CQ9NQX4 1742 aa31.18■■■□□ 2.58
SS18-209ENST00000578595 TROQ12816 1431 aaPredicted RBP31.15■■■□□ 2.58
SS18-209ENST00000578595 COL17A1Q9UMD9 1497 aaPredicted RBP31.15■■■□□ 2.58
SS18-209ENST00000578595 CFAP74Q9C0B2 1584 aa31.14■■■□□ 2.58
SS18-209ENST00000578595 NEO1Q92859 1461 aa31.09■■■□□ 2.57
SS18-209ENST00000578595 FANCAO15360 1455 aa31.07■■■□□ 2.56
SS18-209ENST00000578595 ARAP3Q8WWN8 1544 aa31.04■■■□□ 2.56
SS18-209ENST00000578595 PHLDB1Q86UU1 1377 aa31.03■■■□□ 2.56
SS18-209ENST00000578595 ARHGAP5Q13017 1502 aa30.98■■■□□ 2.55
SS18-209ENST00000578595 PLCH2O75038 1416 aa30.98■■■□□ 2.55
SS18-209ENST00000578595 VPS8Q8N3P4 1428 aa30.98■■■□□ 2.55
SS18-209ENST00000578595 AKNAQ7Z591 1439 aa30.97■■■□□ 2.55
SS18-209ENST00000578595 CDC42BPBQ9Y5S2 1711 aa30.96■■■□□ 2.55
SS18-209ENST00000578595 PREX2Q70Z35 1606 aa30.95■■■□□ 2.55
SS18-209ENST00000578595 MTUS2Q5JR59 1369 aa30.95■■■□□ 2.55
SS18-209ENST00000578595 CDC42BPAQ5VT25 1732 aa30.95■■■□□ 2.54
SS18-209ENST00000578595 RICTORQ6R327 1708 aa30.93■■■□□ 2.54
SS18-209ENST00000578595 RAPGEF3O95398 923 aa30.92■■■□□ 2.54
SS18-209ENST00000578595 ADGRL1O94910 1474 aa30.92■■■□□ 2.54
SS18-209ENST00000578595 FRMPD1Q5SYB0 1578 aa30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 164.6 ms