RNA–Protein interactions for RNA: ENST00000578525.5

CDK5RAP3-208, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 564 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-208	ENST00000578525	PCF11	O94913	1555 aa	Known RBP	13.96	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	CCNB3	Q8WWL7	1395 aa		13.94	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	AQR	O60306	1485 aa	Known RBP eCLIP	13.93	□□□□□ -0.18	2e-7	■■■■□ 24.7
CDK5RAP3-208	ENST00000578525	GAPVD1	Q14C86	1478 aa		13.93	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	LRRC9	Q6ZRR7	1453 aa		13.93	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	FYCO1	Q9BQS8	1478 aa		13.92	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	CLSPN	Q9HAW4	1339 aa		13.91	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	TARBP1	Q13395	1621 aa	Known RBP	13.9	□□□□□ -0.18
CDK5RAP3-208	ENST00000578525	FHOD3	Q2V2M9	1422 aa		13.9	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	CASKIN1	Q8WXD9	1431 aa		13.9	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	DHX57	Q6P158	1386 aa	Known RBP	13.89	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	SAMD9	Q5K651	1589 aa		13.88	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	TDRD9	Q8NDG6	1382 aa	Known RBP	13.87	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	DIEXF	Q68CQ4	756 aa	Known RBP	13.87	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	DNAJC5B	Q9UF47	199 aa		13.87	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	MRC2	Q9UBG0	1479 aa		13.86	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	FMN1	Q68DA7	1419 aa		13.85	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	PBRM1	Q86U86	1689 aa		13.85	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	P3H3	Q8IVL6	736 aa		13.84	□□□□□ -0.19
CDK5RAP3-208	ENST00000578525	SNAPC4	Q5SXM2	1469 aa		13.82	□□□□□ -0.2
CDK5RAP3-208	ENST00000578525	PHLDB1	Q86UU1	1377 aa		13.82	□□□□□ -0.2
CDK5RAP3-208	ENST00000578525	THOC2	Q8NI27	1593 aa	Known RBP	13.81	□□□□□ -0.2
CDK5RAP3-208	ENST00000578525	ADAMTS12	P58397	1594 aa		13.79	□□□□□ -0.2
CDK5RAP3-208	ENST00000578525	GRIN2B	Q13224	1484 aa		13.77	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	WDR62	O43379	1518 aa		13.76	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	IFT140	Q96RY7	1462 aa		13.76	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.76	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	SETD5	Q9C0A6	1442 aa		13.75	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	RAB3GAP2	Q9H2M9	1393 aa		13.75	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	LRRIQ1	Q96JM4	1722 aa		13.73	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	ITGAE	P38570	1179 aa		13.73	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	IQGAP2	Q13576	1575 aa		13.73	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	EHBP1L1	Q8N3D4	1523 aa		13.72	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	FAM50A	Q14320	339 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-208	ENST00000578525	MAPKBP1	O60336	1514 aa		13.7	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	CCDC18	Q5T9S5	1454 aa		13.7	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	HECW1	Q76N89	1606 aa		13.7	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	FGD6	Q6ZV73	1430 aa		13.7	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	MTUS2	Q5JR59	1369 aa		13.7	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.69	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	UGGT2	Q9NYU1	1516 aa		13.67	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	NCOA2	Q15596	1464 aa		13.66	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	CENPB	P07199	599 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK5RAP3-208	ENST00000578525	ACIN1	Q9UKV3	1341 aa	Known RBP	13.64	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	MYOM3	Q5VTT5	1437 aa		13.64	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	ARHGEF11	O15085	1522 aa		13.64	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	EIF4G3	O43432	1585 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	SCAF1	Q9H7N4	1312 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	MAGI3	Q5TCQ9	1506 aa		13.61	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	KIAA0586	Q9BVV6	1533 aa		13.61	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	ERCC6	Q03468	1493 aa		13.61	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	KIAA0556	O60303	1618 aa		13.6	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	PTPN23	Q9H3S7	1636 aa		13.6	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	EPRS	P07814	1512 aa	Known RBP	13.59	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	GRIN2A	Q12879	1464 aa		13.59	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	TCOF1	Q13428	1488 aa	Known RBP	13.59	□□□□□ -0.23
CDK5RAP3-208	ENST00000578525	NEUROD1	Q13562	356 aa		13.58	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	MIER1	Q8N108	512 aa		13.58	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.58	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	HFM1	A2PYH4	1435 aa		13.57	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	PTPRK	Q15262	1439 aa		13.56	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	CDK13	Q14004	1512 aa	Known RBP	13.55	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	DISP1	Q96F81	1524 aa		13.55	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	TIMELESS	Q9UNS1	1208 aa		13.54	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	MIA2	Q96PC5	1412 aa		13.53	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	RAPGEF6	Q8TEU7	1601 aa		13.53	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	GCC2	Q8IWJ2	1684 aa		13.53	□□□□□ -0.24
CDK5RAP3-208	ENST00000578525	NAIP	Q13075	1403 aa		13.52	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	AKNA	Q7Z591	1439 aa		13.52	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	UACA	Q9BZF9	1416 aa		13.52	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	SYNJ2	O15056	1496 aa		13.52	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	CEP170	Q5SW79	1584 aa		13.5	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	SIN3A	Q96ST3	1273 aa		13.49	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	NUP153	P49790	1475 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	NUP160	Q12769	1436 aa		13.47	□□□□□ -0.25
CDK5RAP3-208	ENST00000578525	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.44	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	YTHDC1	Q96MU7	727 aa	Known RBP	13.44	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	DNMT1	P26358	1616 aa	Known RBP	13.42	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	CARMIL2	Q6F5E8	1435 aa		13.42	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	PPP1R15A	O75807	674 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	ADCY10	Q96PN6	1610 aa		13.42	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	GTF3C3	Q9Y5Q9	886 aa		13.41	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	TONSL	Q96HA7	1378 aa		13.41	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	ITSN2	Q9NZM3	1697 aa		13.4	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	TRO	Q12816	1431 aa	Predicted RBP	13.4	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.4	□□□□□ -0.26
CDK5RAP3-208	ENST00000578525	DAPK1	P53355	1430 aa		13.39	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	ARID3C	A6NKF2	412 aa		13.39	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	ROCK1	Q13464	1354 aa		13.39	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	KDM6B	O15054	1643 aa		13.39	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	RRP7BP	Q9NSQ0	103 aa		13.38	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	ABCA8	O94911	1581 aa		13.37	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	PLB1	Q6P1J6	1458 aa		13.36	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	CHIC2	Q9UKJ5	165 aa		13.36	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	ABCC5	O15440	1437 aa		13.36	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	PRG4	Q92954	1404 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-208	ENST00000578525	DENND4B	O75064	1496 aa	Predicted RBP	13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms