RNA–Protein interactions for RNA: ENST00000578314.1

VAPA-205, Transcript of VAMP associated protein A, humanhuman

TSL 3

Gene VAPA, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-205ENST00000578314 CARMIL1Q5VZK9 1371 aa39.35■■■■□ 3.89
VAPA-205ENST00000578314 PRG4Q92954 1404 aaPredicted RBP39.3■■■■□ 3.88
VAPA-205ENST00000578314 RUSC2Q8N2Y8 1516 aa39.28■■■■□ 3.88
VAPA-205ENST00000578314 KIAA0586Q9BVV6 1533 aa39.25■■■■□ 3.87
VAPA-205ENST00000578314 RAPGEF2Q9Y4G8 1499 aa39.03■■■■□ 3.84
VAPA-205ENST00000578314 IQGAP2Q13576 1575 aa38.87■■■■□ 3.81
VAPA-205ENST00000578314 CARMIL2Q6F5E8 1435 aa38.84■■■■□ 3.81
VAPA-205ENST00000578314 PRXQ9BXM0 1461 aa38.8■■■■□ 3.8
VAPA-205ENST00000578314 PTPRGP23470 1445 aa38.79■■■■□ 3.8
VAPA-205ENST00000578314 ADCY10Q96PN6 1610 aa38.78■■■■□ 3.8
VAPA-205ENST00000578314 TNIKQ9UKE5 1360 aa38.77■■■■□ 3.8
VAPA-205ENST00000578314 KIF13AQ9H1H9 1805 aa38.76■■■■□ 3.8
VAPA-205ENST00000578314 NPM1P06748 294 aaKnown RBP eCLIP38.75■■■■□ 3.79
VAPA-205ENST00000578314 DISP1Q96F81 1524 aa38.71■■■■□ 3.79
VAPA-205ENST00000578314 UGGT2Q9NYU1 1516 aa38.71■■■■□ 3.79
VAPA-205ENST00000578314 MAPKBP1O60336 1514 aa38.69■■■■□ 3.78
VAPA-205ENST00000578314 CSRNP3Q8WYN3 585 aa38.69■■■■□ 3.78
VAPA-205ENST00000578314 TTBK1Q5TCY1 1321 aaPredicted RBP38.63■■■■□ 3.78
VAPA-205ENST00000578314 ABCC10Q5T3U5 1492 aa38.62■■■■□ 3.77
VAPA-205ENST00000578314 EEA1Q15075 1411 aa38.6■■■■□ 3.77
VAPA-205ENST00000578314 FAM69CQ0P6D2 419 aa38.55■■■■□ 3.76
VAPA-205ENST00000578314 DIP2BQ9P265 1576 aa38.54■■■■□ 3.76
VAPA-205ENST00000578314 KIAA0556O60303 1618 aa38.51■■■■□ 3.76
VAPA-205ENST00000578314 CTTNBP2Q8WZ74 1663 aa38.51■■■■□ 3.76
VAPA-205ENST00000578314 UHRF1BP1LA0JNW5 1464 aa38.5■■■■□ 3.75
VAPA-205ENST00000578314 UACAQ9BZF9 1416 aa38.5■■■■□ 3.75
VAPA-205ENST00000578314 CHIC1Q5VXU3 224 aa38.49■■■■□ 3.75
VAPA-205ENST00000578314 ABCC2Q92887 1545 aa38.48■■■■□ 3.75
VAPA-205ENST00000578314 GOLGA3Q08378 1498 aa38.46■■■■□ 3.75
VAPA-205ENST00000578314 FAM9AQ8IZU1 332 aaPredicted RBP38.39■■■■□ 3.74
VAPA-205ENST00000578314 KDM5BQ9UGL1 1544 aa38.3■■■■□ 3.72
VAPA-205ENST00000578314 ASXL2Q76L83 1435 aa38.29■■■■□ 3.72
VAPA-205ENST00000578314 PLB1Q6P1J6 1458 aa38.28■■■■□ 3.72
VAPA-205ENST00000578314 TSPOAP1O95153 1857 aa38.24■■■■□ 3.71
VAPA-205ENST00000578314 AEBP2Q6ZN18 517 aaPredicted RBP38.2■■■■□ 3.71
VAPA-205ENST00000578314 P3H3Q8IVL6 736 aa38.18■■■■□ 3.7
VAPA-205ENST00000578314 ABCA8O94911 1581 aa38.16■■■■□ 3.7
VAPA-205ENST00000578314 GLI2P10070 1586 aa38.16■■■■□ 3.7
VAPA-205ENST00000578314 KIF21BO75037 1637 aa38.15■■■■□ 3.7
VAPA-205ENST00000578314 ZCCHC11Q5TAX3 1644 aaKnown RBP38.15■■■■□ 3.7
VAPA-205ENST00000578314 KDM6BO15054 1643 aa38.14■■■■□ 3.7
VAPA-205ENST00000578314 SAMD9Q5K651 1589 aa38.1■■■■□ 3.69
VAPA-205ENST00000578314 EPRSP07814 1512 aaKnown RBP38.05■■■■□ 3.68
VAPA-205ENST00000578314 PPRC1Q5VV67 1664 aaKnown RBP38.04■■■■□ 3.68
VAPA-205ENST00000578314 RANGAP1P46060 587 aaPredicted RBP38.01■■■■□ 3.68
VAPA-205ENST00000578314 WDR7Q9Y4E6 1490 aa37.99■■■■□ 3.67
VAPA-205ENST00000578314 MAP3K4Q9Y6R4 1608 aa37.97■■■■□ 3.67
VAPA-205ENST00000578314 UBTFP17480 764 aaKnown RBP37.93■■■■□ 3.66
VAPA-205ENST00000578314 ATP10BO94823 1461 aa37.9■■■■□ 3.66
VAPA-205ENST00000578314 FHOD3Q2V2M9 1422 aa37.89■■■■□ 3.66
VAPA-205ENST00000578314 EHMT2Q96KQ7 1210 aa37.89■■■■□ 3.66
VAPA-205ENST00000578314 EFCAB5A4FU69 1503 aa37.86■■■■□ 3.65
VAPA-205ENST00000578314 ARID3CA6NKF2 412 aa37.85■■■■□ 3.65
VAPA-205ENST00000578314 KCNH8Q96L42 1107 aa37.85■■■■□ 3.65
VAPA-205ENST00000578314 TEX14Q8IWB6 1497 aa37.84■■■■□ 3.65
VAPA-205ENST00000578314 RAPGEF6Q8TEU7 1601 aa37.81■■■■□ 3.64
VAPA-205ENST00000578314 NUP153P49790 1475 aaKnown RBP37.75■■■■□ 3.63
VAPA-205ENST00000578314 COL17A1Q9UMD9 1497 aaPredicted RBP37.74■■■■□ 3.63
VAPA-205ENST00000578314 CD109Q6YHK3 1445 aa37.73■■■■□ 3.63
VAPA-205ENST00000578314 CFAP43Q8NDM7 1665 aa37.72■■■■□ 3.63
VAPA-205ENST00000578314 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.68■■■■□ 3.62
VAPA-205ENST00000578314 HNRNPUL2Q1KMD3 747 aaKnown RBP37.68■■■■□ 3.62
VAPA-205ENST00000578314 MAGI3Q5TCQ9 1506 aa37.67■■■■□ 3.62
VAPA-205ENST00000578314 KDM4FA0A1W2PPD8 638 aa37.64■■■■□ 3.62
VAPA-205ENST00000578314 ARHGAP35Q9NRY4 1499 aa37.64■■■■□ 3.62
VAPA-205ENST00000578314 FMN1Q68DA7 1419 aa37.57■■■■□ 3.6
VAPA-205ENST00000578314 PLEKHD1A6NEE1 506 aa37.56■■■■□ 3.6
VAPA-205ENST00000578314 ABCA9Q8IUA7 1624 aa37.5■■■■□ 3.59
VAPA-205ENST00000578314 ADGRL1O94910 1474 aa37.42■■■■□ 3.58
VAPA-205ENST00000578314 PHLDB1Q86UU1 1377 aa37.41■■■■□ 3.58
VAPA-205ENST00000578314 ATP1B4Q9UN42 357 aaPredicted RBP37.4■■■■□ 3.58
VAPA-205ENST00000578314 CDK13Q14004 1512 aaKnown RBP37.38■■■■□ 3.57
VAPA-205ENST00000578314 ARAP3Q8WWN8 1544 aa37.36■■■■□ 3.57
VAPA-205ENST00000578314 HECW1Q76N89 1606 aa37.35■■■■□ 3.57
VAPA-205ENST00000578314 NEO1Q92859 1461 aa37.31■■■■□ 3.56
VAPA-205ENST00000578314 CDK11AQ9UQ88 783 aaPredicted RBP37.3■■■■□ 3.56
VAPA-205ENST00000578314 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.27■■■■□ 3.563e-8■■■■■ 36.9
VAPA-205ENST00000578314 CLIP1P30622 1438 aa37.26■■■■□ 3.55
VAPA-205ENST00000578314 CASKIN1Q8WXD9 1431 aa37.23■■■■□ 3.55
VAPA-205ENST00000578314 RAPGEF3O95398 923 aa37.18■■■■□ 3.54
VAPA-205ENST00000578314 TTC37Q6PGP7 1564 aa37.17■■■■□ 3.54
VAPA-205ENST00000578314 TROQ12816 1431 aaPredicted RBP37.14■■■■□ 3.54
VAPA-205ENST00000578314 AKNAQ7Z591 1439 aa37.13■■■■□ 3.53
VAPA-205ENST00000578314 FANCAO15360 1455 aa37.13■■■■□ 3.53
VAPA-205ENST00000578314 PLCH2O75038 1416 aa37.11■■■■□ 3.53
VAPA-205ENST00000578314 PCF11O94913 1555 aaKnown RBP37.1■■■■□ 3.53
VAPA-205ENST00000578314 CCDC18Q5T9S5 1454 aa37.09■■■■□ 3.53
VAPA-205ENST00000578314 FRMPD1Q5SYB0 1578 aa37.08■■■■□ 3.53
VAPA-205ENST00000578314 FYCO1Q9BQS8 1478 aa37.07■■■■□ 3.52
VAPA-205ENST00000578314 LRRIQ1Q96JM4 1722 aa37.06■■■■□ 3.52
VAPA-205ENST00000578314 DENND4BO75064 1496 aaPredicted RBP37.05■■■■□ 3.52
VAPA-205ENST00000578314 CFAP74Q9C0B2 1584 aa37.04■■■■□ 3.52
VAPA-205ENST00000578314 EFCAB2Q5VUJ9 269 aa37■■■■□ 3.51
VAPA-205ENST00000578314 KIF14Q15058 1648 aa36.99■■■■□ 3.51
VAPA-205ENST00000578314 CEP162Q5TB80 1403 aa36.96■■■■□ 3.51
VAPA-205ENST00000578314 RICTORQ6R327 1708 aa36.96■■■■□ 3.51
VAPA-205ENST00000578314 SCAPERQ9BY12 1400 aa36.92■■■■□ 3.5
VAPA-205ENST00000578314 LOC105371045A0A1W2PR82 267 aa36.91■■■■□ 3.5
VAPA-205ENST00000578314 MYO5CQ9NQX4 1742 aa36.88■■■■□ 3.49
VAPA-205ENST00000578314 ARHGEF40Q8TER5 1519 aa36.87■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms