RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 KIAA0586Q9BVV6 1533 aa32.57■■■□□ 2.8
SS18-208ENST00000577751 RAPGEF2Q9Y4G8 1499 aa32.57■■■□□ 2.8
SS18-208ENST00000577751 JPH4Q96JJ6 628 aa32.56■■■□□ 2.8
SS18-208ENST00000577751 ERCC6L2Q5T890 1561 aa32.56■■■□□ 2.8
SS18-208ENST00000577751 PRXQ9BXM0 1461 aa32.48■■■□□ 2.79
SS18-208ENST00000577751 PRG4Q92954 1404 aaPredicted RBP32.47■■■□□ 2.79
SS18-208ENST00000577751 EEA1Q15075 1411 aa32.45■■■□□ 2.79
SS18-208ENST00000577751 CSRNP3Q8WYN3 585 aa32.42■■■□□ 2.78
SS18-208ENST00000577751 IQGAP2Q13576 1575 aa32.37■■■□□ 2.77
SS18-208ENST00000577751 CTTNBP2Q8WZ74 1663 aa32.28■■■□□ 2.76
SS18-208ENST00000577751 FAM9AQ8IZU1 332 aaPredicted RBP32.24■■■□□ 2.75
SS18-208ENST00000577751 UGGT2Q9NYU1 1516 aa32.23■■■□□ 2.75
SS18-208ENST00000577751 CARMIL2Q6F5E8 1435 aa32.19■■■□□ 2.74
SS18-208ENST00000577751 DISP1Q96F81 1524 aa32.17■■■□□ 2.74
SS18-208ENST00000577751 KIF21BO75037 1637 aa32.14■■■□□ 2.74
SS18-208ENST00000577751 TNIKQ9UKE5 1360 aa32.11■■■□□ 2.73
SS18-208ENST00000577751 PTPRGP23470 1445 aa32.08■■■□□ 2.73
SS18-208ENST00000577751 KIAA0556O60303 1618 aa32.08■■■□□ 2.73
SS18-208ENST00000577751 GOLGA3Q08378 1498 aa32.02■■■□□ 2.72
SS18-208ENST00000577751 ADCY10Q96PN6 1610 aa32.01■■■□□ 2.72
SS18-208ENST00000577751 TTBK1Q5TCY1 1321 aaPredicted RBP31.94■■■□□ 2.7
SS18-208ENST00000577751 TRHP20396 242 aaPredicted RBP31.91■■■□□ 2.7
SS18-208ENST00000577751 UACAQ9BZF9 1416 aa31.88■■■□□ 2.69
SS18-208ENST00000577751 UHRF1BP1LA0JNW5 1464 aa31.88■■■□□ 2.69
SS18-208ENST00000577751 SAMD9Q5K651 1589 aa31.88■■■□□ 2.69
SS18-208ENST00000577751 NPM1P06748 294 aaKnown RBP eCLIP31.87■■■□□ 2.69
SS18-208ENST00000577751 MAPKBP1O60336 1514 aa31.82■■■□□ 2.68
SS18-208ENST00000577751 ABCC2Q92887 1545 aa31.82■■■□□ 2.68
SS18-208ENST00000577751 UBTFP17480 764 aaKnown RBP31.8■■■□□ 2.68
SS18-208ENST00000577751 EHMT2Q96KQ7 1210 aa31.79■■■□□ 2.68
SS18-208ENST00000577751 P3H3Q8IVL6 736 aa31.77■■■□□ 2.68
SS18-208ENST00000577751 PLB1Q6P1J6 1458 aa31.75■■■□□ 2.67
SS18-208ENST00000577751 ABCA8O94911 1581 aa31.75■■■□□ 2.67
SS18-208ENST00000577751 KDM5BQ9UGL1 1544 aa31.73■■■□□ 2.67
SS18-208ENST00000577751 EFCAB5A4FU69 1503 aa31.71■■■□□ 2.67
SS18-208ENST00000577751 RANGAP1P46060 587 aaPredicted RBP31.71■■■□□ 2.67
SS18-208ENST00000577751 KIF13AQ9H1H9 1805 aa31.69■■■□□ 2.66
SS18-208ENST00000577751 ABCC10Q5T3U5 1492 aa31.67■■■□□ 2.66
SS18-208ENST00000577751 ZCCHC11Q5TAX3 1644 aaKnown RBP31.64■■■□□ 2.66
SS18-208ENST00000577751 FHOD3Q2V2M9 1422 aa31.64■■■□□ 2.66
SS18-208ENST00000577751 DIP2BQ9P265 1576 aa31.61■■■□□ 2.65
SS18-208ENST00000577751 ASXL2Q76L83 1435 aa31.6■■■□□ 2.65
SS18-208ENST00000577751 FAM69CQ0P6D2 419 aa31.56■■■□□ 2.64
SS18-208ENST00000577751 RAPGEF6Q8TEU7 1601 aa31.56■■■□□ 2.64
SS18-208ENST00000577751 ARHGAP35Q9NRY4 1499 aa31.55■■■□□ 2.64
SS18-208ENST00000577751 ATP10BO94823 1461 aa31.48■■■□□ 2.63
SS18-208ENST00000577751 GLI2P10070 1586 aa31.46■■■□□ 2.63
SS18-208ENST00000577751 NUP153P49790 1475 aaKnown RBP31.44■■■□□ 2.62
SS18-208ENST00000577751 WDR7Q9Y4E6 1490 aa31.44■■■□□ 2.62
SS18-208ENST00000577751 EPRSP07814 1512 aaKnown RBP31.44■■■□□ 2.62
SS18-208ENST00000577751 FMN1Q68DA7 1419 aa31.41■■■□□ 2.62
SS18-208ENST00000577751 ARID3CA6NKF2 412 aa31.38■■■□□ 2.61
SS18-208ENST00000577751 TSPOAP1O95153 1857 aa31.33■■■□□ 2.61
SS18-208ENST00000577751 CLIP1P30622 1438 aa31.32■■■□□ 2.61
SS18-208ENST00000577751 MAP3K4Q9Y6R4 1608 aa31.31■■■□□ 2.6
SS18-208ENST00000577751 PPRC1Q5VV67 1664 aaKnown RBP31.28■■■□□ 2.6
SS18-208ENST00000577751 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.26■■■□□ 2.59
SS18-208ENST00000577751 HNRNPUL2Q1KMD3 747 aaKnown RBP31.26■■■□□ 2.59
SS18-208ENST00000577751 KCNH8Q96L42 1107 aa31.26■■■□□ 2.59
SS18-208ENST00000577751 HECW1Q76N89 1606 aa31.25■■■□□ 2.59
SS18-208ENST00000577751 LOC105371045A0A1W2PR82 267 aa31.25■■■□□ 2.59
SS18-208ENST00000577751 CFAP43Q8NDM7 1665 aa31.22■■■□□ 2.59
SS18-208ENST00000577751 CDK13Q14004 1512 aaKnown RBP31.19■■■□□ 2.58
SS18-208ENST00000577751 CEP162Q5TB80 1403 aa31.18■■■□□ 2.58
SS18-208ENST00000577751 CASKIN1Q8WXD9 1431 aa31.17■■■□□ 2.58
SS18-208ENST00000577751 PLEKHD1A6NEE1 506 aa31.17■■■□□ 2.58
SS18-208ENST00000577751 ATP1B4Q9UN42 357 aaPredicted RBP31.16■■■□□ 2.58
SS18-208ENST00000577751 CD109Q6YHK3 1445 aa31.15■■■□□ 2.58
SS18-208ENST00000577751 LRRIQ1Q96JM4 1722 aa31.15■■■□□ 2.58
SS18-208ENST00000577751 PCF11O94913 1555 aaKnown RBP31.15■■■□□ 2.58
SS18-208ENST00000577751 ABCA9Q8IUA7 1624 aa31.15■■■□□ 2.58
SS18-208ENST00000577751 TEX14Q8IWB6 1497 aa31.13■■■□□ 2.57
SS18-208ENST00000577751 MAGI3Q5TCQ9 1506 aa31.13■■■□□ 2.57
SS18-208ENST00000577751 KDM6BO15054 1643 aa31.09■■■□□ 2.57
SS18-208ENST00000577751 FYCO1Q9BQS8 1478 aa31.08■■■□□ 2.57
SS18-208ENST00000577751 CCDC18Q5T9S5 1454 aa31.03■■■□□ 2.56
SS18-208ENST00000577751 CDK11AQ9UQ88 783 aaPredicted RBP31.03■■■□□ 2.56
SS18-208ENST00000577751 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31■■■□□ 2.55
SS18-208ENST00000577751 COL17A1Q9UMD9 1497 aaPredicted RBP30.98■■■□□ 2.55
SS18-208ENST00000577751 TROQ12816 1431 aaPredicted RBP30.97■■■□□ 2.55
SS18-208ENST00000577751 TTC37Q6PGP7 1564 aa30.94■■■□□ 2.54
SS18-208ENST00000577751 KIF14Q15058 1648 aa30.89■■■□□ 2.54
SS18-208ENST00000577751 PHLDB1Q86UU1 1377 aa30.89■■■□□ 2.54
SS18-208ENST00000577751 NEO1Q92859 1461 aa30.88■■■□□ 2.53
SS18-208ENST00000577751 ARAP3Q8WWN8 1544 aa30.87■■■□□ 2.53
SS18-208ENST00000577751 VPS8Q8N3P4 1428 aa30.82■■■□□ 2.52
SS18-208ENST00000577751 PLCH2O75038 1416 aa30.81■■■□□ 2.52
SS18-208ENST00000577751 MYO5CQ9NQX4 1742 aa30.8■■■□□ 2.52
SS18-208ENST00000577751 FANCAO15360 1455 aa30.79■■■□□ 2.52
SS18-208ENST00000577751 CFAP74Q9C0B2 1584 aa30.79■■■□□ 2.52
SS18-208ENST00000577751 AKNAQ7Z591 1439 aa30.75■■■□□ 2.51
SS18-208ENST00000577751 MTUS2Q5JR59 1369 aa30.69■■■□□ 2.5
SS18-208ENST00000577751 CDC42BPBQ9Y5S2 1711 aa30.68■■■□□ 2.5
SS18-208ENST00000577751 EFCAB2Q5VUJ9 269 aa30.68■■■□□ 2.5
SS18-208ENST00000577751 PREX2Q70Z35 1606 aa30.66■■■□□ 2.5
SS18-208ENST00000577751 RAPGEF3O95398 923 aa30.66■■■□□ 2.5
SS18-208ENST00000577751 TIAM1Q13009 1591 aa30.66■■■□□ 2.5
SS18-208ENST00000577751 FRMPD1Q5SYB0 1578 aa30.66■■■□□ 2.5
SS18-208ENST00000577751 EHBP1L1Q8N3D4 1523 aa30.65■■■□□ 2.5
SS18-208ENST00000577751 CDC42BPAQ5VT25 1732 aa30.64■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms