RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 PRG4Q92954 1404 aaPredicted RBP26.48■■□□□ 1.83
SF3B3-215ENST00000577085 RUSC2Q8N2Y8 1516 aa26.47■■□□□ 1.83
SF3B3-215ENST00000577085 CARMIL1Q5VZK9 1371 aa26.46■■□□□ 1.83
SF3B3-215ENST00000577085 KIAA0586Q9BVV6 1533 aa26.39■■□□□ 1.82
SF3B3-215ENST00000577085 RAPGEF2Q9Y4G8 1499 aa26.27■■□□□ 1.8
SF3B3-215ENST00000577085 IQGAP2Q13576 1575 aa26.21■■□□□ 1.79
SF3B3-215ENST00000577085 NPM1P06748 294 aaKnown RBP eCLIP26.21■■□□□ 1.79
SF3B3-215ENST00000577085 CARMIL2Q6F5E8 1435 aa26.21■■□□□ 1.79
SF3B3-215ENST00000577085 TTBK1Q5TCY1 1321 aaPredicted RBP26.17■■□□□ 1.78
SF3B3-215ENST00000577085 PTPRGP23470 1445 aa26.13■■□□□ 1.77
SF3B3-215ENST00000577085 TNIKQ9UKE5 1360 aa26.1■■□□□ 1.77
SF3B3-215ENST00000577085 ADCY10Q96PN6 1610 aa26.07■■□□□ 1.76
SF3B3-215ENST00000577085 PRXQ9BXM0 1461 aa26.03■■□□□ 1.76
SF3B3-215ENST00000577085 UGGT2Q9NYU1 1516 aa26.02■■□□□ 1.76
SF3B3-215ENST00000577085 DISP1Q96F81 1524 aa26.01■■□□□ 1.75
SF3B3-215ENST00000577085 CTTNBP2Q8WZ74 1663 aa26■■□□□ 1.75
SF3B3-215ENST00000577085 CSRNP3Q8WYN3 585 aa25.99■■□□□ 1.75
SF3B3-215ENST00000577085 MAPKBP1O60336 1514 aa25.98■■□□□ 1.75
SF3B3-215ENST00000577085 FAM69CQ0P6D2 419 aa25.96■■□□□ 1.75
SF3B3-215ENST00000577085 EEA1Q15075 1411 aa25.95■■□□□ 1.74
SF3B3-215ENST00000577085 KIAA0556O60303 1618 aa25.95■■□□□ 1.74
SF3B3-215ENST00000577085 GOLGA3Q08378 1498 aa25.93■■□□□ 1.74
SF3B3-215ENST00000577085 ABCC10Q5T3U5 1492 aa25.92■■□□□ 1.74
SF3B3-215ENST00000577085 UACAQ9BZF9 1416 aa25.92■■□□□ 1.74
SF3B3-215ENST00000577085 KIF13AQ9H1H9 1805 aa25.92■■□□□ 1.74
SF3B3-215ENST00000577085 ABCC2Q92887 1545 aa25.91■■□□□ 1.74
SF3B3-215ENST00000577085 FAM9AQ8IZU1 332 aaPredicted RBP25.89■■□□□ 1.74
SF3B3-215ENST00000577085 UHRF1BP1LA0JNW5 1464 aa25.88■■□□□ 1.73
SF3B3-215ENST00000577085 DIP2BQ9P265 1576 aa25.86■■□□□ 1.73
SF3B3-215ENST00000577085 ASXL2Q76L83 1435 aa25.8■■□□□ 1.72
SF3B3-215ENST00000577085 PLB1Q6P1J6 1458 aa25.79■■□□□ 1.72
SF3B3-215ENST00000577085 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
SF3B3-215ENST00000577085 KDM5BQ9UGL1 1544 aa25.75■■□□□ 1.71
SF3B3-215ENST00000577085 P3H3Q8IVL6 736 aa25.75■■□□□ 1.71
SF3B3-215ENST00000577085 RANGAP1P46060 587 aaPredicted RBP25.72■■□□□ 1.71
SF3B3-215ENST00000577085 ZCCHC11Q5TAX3 1644 aaKnown RBP25.71■■□□□ 1.71
SF3B3-215ENST00000577085 TSPOAP1O95153 1857 aa25.68■■□□□ 1.7
SF3B3-215ENST00000577085 KIF21BO75037 1637 aa25.66■■□□□ 1.7
SF3B3-215ENST00000577085 ABCA8O94911 1581 aa25.65■■□□□ 1.7
SF3B3-215ENST00000577085 GLI2P10070 1586 aa25.64■■□□□ 1.69
SF3B3-215ENST00000577085 SAMD9Q5K651 1589 aa25.63■■□□□ 1.69
SF3B3-215ENST00000577085 EHMT2Q96KQ7 1210 aa25.62■■□□□ 1.69
SF3B3-215ENST00000577085 EPRSP07814 1512 aaKnown RBP25.62■■□□□ 1.69
SF3B3-215ENST00000577085 WDR7Q9Y4E6 1490 aa25.6■■□□□ 1.69
SF3B3-215ENST00000577085 KDM6BO15054 1643 aa25.59■■□□□ 1.69
SF3B3-215ENST00000577085 UBTFP17480 764 aaKnown RBP25.59■■□□□ 1.69
SF3B3-215ENST00000577085 ARID3CA6NKF2 412 aa25.58■■□□□ 1.69
SF3B3-215ENST00000577085 KCNH8Q96L42 1107 aa25.55■■□□□ 1.68
SF3B3-215ENST00000577085 AEBP2Q6ZN18 517 aaPredicted RBP25.54■■□□□ 1.68
SF3B3-215ENST00000577085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.52■■□□□ 1.68
SF3B3-215ENST00000577085 HNRNPUL2Q1KMD3 747 aaKnown RBP25.52■■□□□ 1.68
SF3B3-215ENST00000577085 FHOD3Q2V2M9 1422 aa25.52■■□□□ 1.68
SF3B3-215ENST00000577085 TEX14Q8IWB6 1497 aa25.51■■□□□ 1.67
SF3B3-215ENST00000577085 MAP3K4Q9Y6R4 1608 aa25.51■■□□□ 1.67
SF3B3-215ENST00000577085 EFCAB5A4FU69 1503 aa25.5■■□□□ 1.67
SF3B3-215ENST00000577085 RAPGEF6Q8TEU7 1601 aa25.5■■□□□ 1.67
SF3B3-215ENST00000577085 PPRC1Q5VV67 1664 aaKnown RBP25.47■■□□□ 1.67
SF3B3-215ENST00000577085 ATP10BO94823 1461 aa25.47■■□□□ 1.67
SF3B3-215ENST00000577085 CD109Q6YHK3 1445 aa25.43■■□□□ 1.66
SF3B3-215ENST00000577085 CFAP43Q8NDM7 1665 aa25.4■■□□□ 1.66
SF3B3-215ENST00000577085 NUP153P49790 1475 aaKnown RBP25.38■■□□□ 1.65
SF3B3-215ENST00000577085 MAGI3Q5TCQ9 1506 aa25.35■■□□□ 1.65
SF3B3-215ENST00000577085 PLEKHD1A6NEE1 506 aa25.32■■□□□ 1.64
SF3B3-215ENST00000577085 ATP1B4Q9UN42 357 aaPredicted RBP25.32■■□□□ 1.64
SF3B3-215ENST00000577085 FMN1Q68DA7 1419 aa25.3■■□□□ 1.64
SF3B3-215ENST00000577085 ARHGAP35Q9NRY4 1499 aa25.28■■□□□ 1.64
SF3B3-215ENST00000577085 COL17A1Q9UMD9 1497 aaPredicted RBP25.28■■□□□ 1.64
SF3B3-215ENST00000577085 ABCA9Q8IUA7 1624 aa25.26■■□□□ 1.63
SF3B3-215ENST00000577085 HECW1Q76N89 1606 aa25.21■■□□□ 1.63
SF3B3-215ENST00000577085 PHLDB1Q86UU1 1377 aa25.18■■□□□ 1.62
SF3B3-215ENST00000577085 CDK13Q14004 1512 aaKnown RBP25.18■■□□□ 1.62
SF3B3-215ENST00000577085 CDK11AQ9UQ88 783 aaPredicted RBP25.17■■□□□ 1.62
SF3B3-215ENST00000577085 ARAP3Q8WWN8 1544 aa25.14■■□□□ 1.62
SF3B3-215ENST00000577085 KDM4FA0A1W2PPD8 638 aa25.13■■□□□ 1.61
SF3B3-215ENST00000577085 NEO1Q92859 1461 aa25.13■■□□□ 1.61
SF3B3-215ENST00000577085 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.09■■□□□ 1.612e-7■□□□□ 10.7
SF3B3-215ENST00000577085 CLIP1P30622 1438 aa25.08■■□□□ 1.61
SF3B3-215ENST00000577085 ADGRL1O94910 1474 aa25.06■■□□□ 1.6
SF3B3-215ENST00000577085 RAPGEF3O95398 923 aa25.05■■□□□ 1.6
SF3B3-215ENST00000577085 TTC37Q6PGP7 1564 aa25.05■■□□□ 1.6
SF3B3-215ENST00000577085 FANCAO15360 1455 aa25.04■■□□□ 1.6
SF3B3-215ENST00000577085 CFAP74Q9C0B2 1584 aa25.04■■□□□ 1.6
SF3B3-215ENST00000577085 CASKIN1Q8WXD9 1431 aa25.03■■□□□ 1.6
SF3B3-215ENST00000577085 AKNAQ7Z591 1439 aa25.01■■□□□ 1.59
SF3B3-215ENST00000577085 PCF11O94913 1555 aaKnown RBP25.01■■□□□ 1.59
SF3B3-215ENST00000577085 CCDC18Q5T9S5 1454 aa25■■□□□ 1.59
SF3B3-215ENST00000577085 TROQ12816 1431 aaPredicted RBP24.99■■□□□ 1.59
SF3B3-215ENST00000577085 KIF14Q15058 1648 aa24.99■■□□□ 1.59
SF3B3-215ENST00000577085 DENND4BO75064 1496 aaPredicted RBP24.98■■□□□ 1.59
SF3B3-215ENST00000577085 PLCH2O75038 1416 aa24.96■■□□□ 1.59
SF3B3-215ENST00000577085 FYCO1Q9BQS8 1478 aa24.96■■□□□ 1.59
SF3B3-215ENST00000577085 LRRIQ1Q96JM4 1722 aa24.94■■□□□ 1.58
SF3B3-215ENST00000577085 MYO5CQ9NQX4 1742 aa24.92■■□□□ 1.58
SF3B3-215ENST00000577085 EFCAB2Q5VUJ9 269 aa24.92■■□□□ 1.58
SF3B3-215ENST00000577085 FRMPD1Q5SYB0 1578 aa24.91■■□□□ 1.58
SF3B3-215ENST00000577085 ARID4BQ4LE39 1312 aaPredicted RBP24.88■■□□□ 1.57
SF3B3-215ENST00000577085 ARHGAP5Q13017 1502 aa24.87■■□□□ 1.57
SF3B3-215ENST00000577085 CEP162Q5TB80 1403 aa24.86■■□□□ 1.57
SF3B3-215ENST00000577085 SCAPERQ9BY12 1400 aa24.86■■□□□ 1.57
SF3B3-215ENST00000577085 RICTORQ6R327 1708 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms