RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ABCC10Q5T3U5 1492 aa24.04■■□□□ 1.44
CCDC40-216ENST00000576241 ERICH3Q5RHP9 1530 aa24.03■■□□□ 1.44
CCDC40-216ENST00000576241 KDM6BO15054 1643 aa24.01■■□□□ 1.43
CCDC40-216ENST00000576241 DIP2BQ9P265 1576 aa23.95■■□□□ 1.43
CCDC40-216ENST00000576241 PRG4Q92954 1404 aaPredicted RBP23.95■■□□□ 1.42
CCDC40-216ENST00000576241 NPM1P06748 294 aaKnown RBP eCLIP23.92■■□□□ 1.42
CCDC40-216ENST00000576241 MAPKBP1O60336 1514 aa23.92■■□□□ 1.42
CCDC40-216ENST00000576241 TSPOAP1O95153 1857 aa23.89■■□□□ 1.41
CCDC40-216ENST00000576241 JPH4Q96JJ6 628 aa23.86■■□□□ 1.41
CCDC40-216ENST00000576241 KIF27Q86VH2 1401 aa23.81■■□□□ 1.4
CCDC40-216ENST00000576241 ADCY10Q96PN6 1610 aa23.81■■□□□ 1.4
CCDC40-216ENST00000576241 ADGRL1O94910 1474 aa23.78■■□□□ 1.4
CCDC40-216ENST00000576241 HECW2Q9P2P5 1572 aa23.75■■□□□ 1.39
CCDC40-216ENST00000576241 IGF1RP08069 1367 aa23.74■■□□□ 1.39
CCDC40-216ENST00000576241 RUSC2Q8N2Y8 1516 aa23.73■■□□□ 1.39
CCDC40-216ENST00000576241 CUL7Q14999 1698 aa23.7■■□□□ 1.39
CCDC40-216ENST00000576241 KIAA0586Q9BVV6 1533 aa23.64■■□□□ 1.38
CCDC40-216ENST00000576241 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
CCDC40-216ENST00000576241 PPRC1Q5VV67 1664 aaKnown RBP23.58■■□□□ 1.37
CCDC40-216ENST00000576241 FBXO41Q8TF61 875 aa23.56■■□□□ 1.36
CCDC40-216ENST00000576241 COL17A1Q9UMD9 1497 aaPredicted RBP23.52■■□□□ 1.36
CCDC40-216ENST00000576241 GLI2P10070 1586 aa23.48■■□□□ 1.35
CCDC40-216ENST00000576241 ASXL2Q76L83 1435 aa23.46■■□□□ 1.35
CCDC40-216ENST00000576241 PTPRGP23470 1445 aa23.44■■□□□ 1.34
CCDC40-216ENST00000576241 CARMIL2Q6F5E8 1435 aa23.44■■□□□ 1.34
CCDC40-216ENST00000576241 TTBK1Q5TCY1 1321 aaPredicted RBP23.44■■□□□ 1.34
CCDC40-216ENST00000576241 ABCC2Q92887 1545 aa23.43■■□□□ 1.34
CCDC40-216ENST00000576241 PLB1Q6P1J6 1458 aa23.43■■□□□ 1.34
CCDC40-216ENST00000576241 IQGAP2Q13576 1575 aa23.43■■□□□ 1.34
CCDC40-216ENST00000576241 RAPGEF2Q9Y4G8 1499 aa23.42■■□□□ 1.34
CCDC40-216ENST00000576241 TNIKQ9UKE5 1360 aa23.39■■□□□ 1.33
CCDC40-216ENST00000576241 MAP3K4Q9Y6R4 1608 aa23.34■■□□□ 1.33
CCDC40-216ENST00000576241 TEX14Q8IWB6 1497 aa23.32■■□□□ 1.32
CCDC40-216ENST00000576241 EPRSP07814 1512 aaKnown RBP23.31■■□□□ 1.32
CCDC40-216ENST00000576241 DISP1Q96F81 1524 aa23.28■■□□□ 1.32
CCDC40-216ENST00000576241 UGGT2Q9NYU1 1516 aa23.28■■□□□ 1.32
CCDC40-216ENST00000576241 UHRF1BP1LA0JNW5 1464 aa23.27■■□□□ 1.32
CCDC40-216ENST00000576241 UACAQ9BZF9 1416 aa23.23■■□□□ 1.31
CCDC40-216ENST00000576241 LMTK3Q96Q04 1460 aa23.22■■□□□ 1.31
CCDC40-216ENST00000576241 KIAA0556O60303 1618 aa23.2■■□□□ 1.3
CCDC40-216ENST00000576241 KDM5BQ9UGL1 1544 aa23.18■■□□□ 1.3
CCDC40-216ENST00000576241 PRXQ9BXM0 1461 aa23.18■■□□□ 1.3
CCDC40-216ENST00000576241 CTTNBP2Q8WZ74 1663 aa23.16■■□□□ 1.3
CCDC40-216ENST00000576241 ZCCHC11Q5TAX3 1644 aaKnown RBP23.15■■□□□ 1.3
CCDC40-216ENST00000576241 KIF21BO75037 1637 aa23.15■■□□□ 1.3
CCDC40-216ENST00000576241 GOLGA3Q08378 1498 aa23.14■■□□□ 1.29
CCDC40-216ENST00000576241 WDR7Q9Y4E6 1490 aa23.06■■□□□ 1.28
CCDC40-216ENST00000576241 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
CCDC40-216ENST00000576241 PTPRMP28827 1452 aa23.05■■□□□ 1.28
CCDC40-216ENST00000576241 MAGI3Q5TCQ9 1506 aa23.04■■□□□ 1.28
CCDC40-216ENST00000576241 CD109Q6YHK3 1445 aa23.04■■□□□ 1.28
CCDC40-216ENST00000576241 ILDR2Q71H61 639 aa23.01■■□□□ 1.27
CCDC40-216ENST00000576241 EEA1Q15075 1411 aa23■■□□□ 1.27
CCDC40-216ENST00000576241 ADAMTSL3P82987 1691 aa23■■□□□ 1.27
CCDC40-216ENST00000576241 CFAP43Q8NDM7 1665 aa23■■□□□ 1.27
CCDC40-216ENST00000576241 SOCS7O14512 581 aa23■■□□□ 1.27
CCDC40-216ENST00000576241 FAM9AQ8IZU1 332 aaPredicted RBP23■■□□□ 1.27
CCDC40-216ENST00000576241 PCF11O94913 1555 aaKnown RBP22.98■■□□□ 1.27
CCDC40-216ENST00000576241 ABCA8O94911 1581 aa22.97■■□□□ 1.27
CCDC40-216ENST00000576241 KCNH8Q96L42 1107 aa22.97■■□□□ 1.27
CCDC40-216ENST00000576241 DISP3Q9P2K9 1392 aa22.93■■□□□ 1.26
CCDC40-216ENST00000576241 P3H3Q8IVL6 736 aa22.92■■□□□ 1.26
CCDC40-216ENST00000576241 ARAP3Q8WWN8 1544 aa22.9■■□□□ 1.26
CCDC40-216ENST00000576241 CERKQ8TCT0 537 aa22.88■■□□□ 1.25
CCDC40-216ENST00000576241 MADDQ8WXG6 1647 aa22.86■■□□□ 1.25
CCDC40-216ENST00000576241 SAMD9Q5K651 1589 aa22.85■■□□□ 1.25
CCDC40-216ENST00000576241 BCORL1Q5H9F3 1711 aa22.85■■□□□ 1.25
CCDC40-216ENST00000576241 HSPA2P54652 639 aa22.84■■□□□ 1.25
CCDC40-216ENST00000576241 ARID3CA6NKF2 412 aa22.83■■□□□ 1.25
CCDC40-216ENST00000576241 RANGAP1P46060 587 aaPredicted RBP22.81■■□□□ 1.24
CCDC40-216ENST00000576241 ARID4BQ4LE39 1312 aaPredicted RBP22.8■■□□□ 1.24
CCDC40-216ENST00000576241 ATP10BO94823 1461 aa22.79■■□□□ 1.24
CCDC40-216ENST00000576241 RAPGEF3O95398 923 aa22.78■■□□□ 1.24
CCDC40-216ENST00000576241 RAPGEF6Q8TEU7 1601 aa22.75■■□□□ 1.23
CCDC40-216ENST00000576241 RIMS1Q86UR5 1692 aaKnown RBP22.75■■□□□ 1.23
CCDC40-216ENST00000576241 FHOD3Q2V2M9 1422 aa22.74■■□□□ 1.23
CCDC40-216ENST00000576241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.73■■□□□ 1.23
CCDC40-216ENST00000576241 HNRNPUL2Q1KMD3 747 aaKnown RBP22.73■■□□□ 1.23
CCDC40-216ENST00000576241 PHLDB1Q86UU1 1377 aa22.72■■□□□ 1.23
CCDC40-216ENST00000576241 CHIC1Q5VXU3 224 aa22.71■■□□□ 1.23
CCDC40-216ENST00000576241 PLPPR3Q6T4P5 718 aa22.71■■□□□ 1.23
CCDC40-216ENST00000576241 EFCAB5A4FU69 1503 aa22.7■■□□□ 1.22
CCDC40-216ENST00000576241 NUP153P49790 1475 aaKnown RBP22.68■■□□□ 1.22
CCDC40-216ENST00000576241 FRMPD1Q5SYB0 1578 aa22.67■■□□□ 1.22
CCDC40-216ENST00000576241 SPATA31D1Q6ZQQ2 1576 aa22.67■■□□□ 1.22
CCDC40-216ENST00000576241 ABCA9Q8IUA7 1624 aa22.65■■□□□ 1.22
CCDC40-216ENST00000576241 UBTFP17480 764 aaKnown RBP22.65■■□□□ 1.22
CCDC40-216ENST00000576241 EHMT2Q96KQ7 1210 aa22.64■■□□□ 1.21
CCDC40-216ENST00000576241 NEO1Q92859 1461 aa22.63■■□□□ 1.21
CCDC40-216ENST00000576241 PLEKHD1A6NEE1 506 aa22.59■■□□□ 1.21
CCDC40-216ENST00000576241 ARHGEF40Q8TER5 1519 aa22.58■■□□□ 1.21
CCDC40-216ENST00000576241 POGZQ7Z3K3 1410 aa22.52■■□□□ 1.2
CCDC40-216ENST00000576241 FMN1Q68DA7 1419 aa22.51■■□□□ 1.19
CCDC40-216ENST00000576241 SIGLEC1Q9BZZ2 1709 aa22.51■■□□□ 1.19
CCDC40-216ENST00000576241 FANCAO15360 1455 aa22.5■■□□□ 1.19
CCDC40-216ENST00000576241 RICTORQ6R327 1708 aa22.49■■□□□ 1.19
CCDC40-216ENST00000576241 ATP1B4Q9UN42 357 aaPredicted RBP22.48■■□□□ 1.19
CCDC40-216ENST00000576241 DENND4BO75064 1496 aaPredicted RBP22.47■■□□□ 1.19
CCDC40-216ENST00000576241 ARHGAP35Q9NRY4 1499 aa22.47■■□□□ 1.19
CCDC40-216ENST00000576241 CDK13Q14004 1512 aaKnown RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms