RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 SHROOM2Q13796 1616 aa22.86■■□□□ 1.25
CIITA-210ENST00000575513 RAPGEF2Q9Y4G8 1499 aa22.85■■□□□ 1.25
CIITA-210ENST00000575513 CHIC1Q5VXU3 224 aa22.82■■□□□ 1.24
CIITA-210ENST00000575513 PRG4Q92954 1404 aaPredicted RBP22.81■■□□□ 1.24
CIITA-210ENST00000575513 EEA1Q15075 1411 aa22.78■■□□□ 1.24
CIITA-210ENST00000575513 CSRNP3Q8WYN3 585 aa22.77■■□□□ 1.24
CIITA-210ENST00000575513 PRXQ9BXM0 1461 aa22.76■■□□□ 1.23
CIITA-210ENST00000575513 ERCC6L2Q5T890 1561 aa22.76■■□□□ 1.23
CIITA-210ENST00000575513 IQGAP2Q13576 1575 aa22.67■■□□□ 1.22
CIITA-210ENST00000575513 CARMIL2Q6F5E8 1435 aa22.65■■□□□ 1.22
CIITA-210ENST00000575513 UGGT2Q9NYU1 1516 aa22.59■■□□□ 1.21
CIITA-210ENST00000575513 TNIKQ9UKE5 1360 aa22.57■■□□□ 1.2
CIITA-210ENST00000575513 PTPRGP23470 1445 aa22.56■■□□□ 1.2
CIITA-210ENST00000575513 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
CIITA-210ENST00000575513 DISP1Q96F81 1524 aa22.54■■□□□ 1.2
CIITA-210ENST00000575513 CTTNBP2Q8WZ74 1663 aa22.49■■□□□ 1.19
CIITA-210ENST00000575513 TRHP20396 242 aaPredicted RBP22.49■■□□□ 1.19
CIITA-210ENST00000575513 GOLGA3Q08378 1498 aa22.48■■□□□ 1.19
CIITA-210ENST00000575513 NPM1P06748 294 aaKnown RBP eCLIP22.47■■□□□ 1.19
CIITA-210ENST00000575513 KIF21BO75037 1637 aa22.45■■□□□ 1.18
CIITA-210ENST00000575513 KIAA0556O60303 1618 aa22.43■■□□□ 1.18
CIITA-210ENST00000575513 UHRF1BP1LA0JNW5 1464 aa22.4■■□□□ 1.18
CIITA-210ENST00000575513 UACAQ9BZF9 1416 aa22.4■■□□□ 1.18
CIITA-210ENST00000575513 ADCY10Q96PN6 1610 aa22.39■■□□□ 1.18
CIITA-210ENST00000575513 TTBK1Q5TCY1 1321 aaPredicted RBP22.39■■□□□ 1.18
CIITA-210ENST00000575513 MAPKBP1O60336 1514 aa22.34■■□□□ 1.17
CIITA-210ENST00000575513 ABCC2Q92887 1545 aa22.34■■□□□ 1.17
CIITA-210ENST00000575513 UBTFP17480 764 aaKnown RBP22.32■■□□□ 1.16
CIITA-210ENST00000575513 SAMD9Q5K651 1589 aa22.28■■□□□ 1.16
CIITA-210ENST00000575513 KDM5BQ9UGL1 1544 aa22.27■■□□□ 1.16
CIITA-210ENST00000575513 P3H3Q8IVL6 736 aa22.26■■□□□ 1.15
CIITA-210ENST00000575513 ABCC10Q5T3U5 1492 aa22.26■■□□□ 1.15
CIITA-210ENST00000575513 PLB1Q6P1J6 1458 aa22.24■■□□□ 1.15
CIITA-210ENST00000575513 ABCA8O94911 1581 aa22.22■■□□□ 1.15
CIITA-210ENST00000575513 FAM69CQ0P6D2 419 aa22.22■■□□□ 1.15
CIITA-210ENST00000575513 EFCAB5A4FU69 1503 aa22.21■■□□□ 1.15
CIITA-210ENST00000575513 RANGAP1P46060 587 aaPredicted RBP22.2■■□□□ 1.14
CIITA-210ENST00000575513 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.14
CIITA-210ENST00000575513 ASXL2Q76L83 1435 aa22.19■■□□□ 1.14
CIITA-210ENST00000575513 FHOD3Q2V2M9 1422 aa22.14■■□□□ 1.14
CIITA-210ENST00000575513 DIP2BQ9P265 1576 aa22.14■■□□□ 1.13
CIITA-210ENST00000575513 KIF13AQ9H1H9 1805 aa22.13■■□□□ 1.13
CIITA-210ENST00000575513 ZCCHC11Q5TAX3 1644 aaKnown RBP22.12■■□□□ 1.13
CIITA-210ENST00000575513 GLI2P10070 1586 aa22.08■■□□□ 1.13
CIITA-210ENST00000575513 ATP10BO94823 1461 aa22.08■■□□□ 1.12
CIITA-210ENST00000575513 ARHGAP35Q9NRY4 1499 aa22.08■■□□□ 1.12
CIITA-210ENST00000575513 WDR7Q9Y4E6 1490 aa22.08■■□□□ 1.12
CIITA-210ENST00000575513 EPRSP07814 1512 aaKnown RBP22.06■■□□□ 1.12
CIITA-210ENST00000575513 RAPGEF6Q8TEU7 1601 aa22.06■■□□□ 1.12
CIITA-210ENST00000575513 FMN1Q68DA7 1419 aa22.06■■□□□ 1.12
CIITA-210ENST00000575513 NUP153P49790 1475 aaKnown RBP22.03■■□□□ 1.12
CIITA-210ENST00000575513 ARID3CA6NKF2 412 aa21.98■■□□□ 1.11
CIITA-210ENST00000575513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.97■■□□□ 1.11
CIITA-210ENST00000575513 HNRNPUL2Q1KMD3 747 aaKnown RBP21.97■■□□□ 1.11
CIITA-210ENST00000575513 KCNH8Q96L42 1107 aa21.97■■□□□ 1.11
CIITA-210ENST00000575513 CLIP1P30622 1438 aa21.95■■□□□ 1.1
CIITA-210ENST00000575513 PLEKHD1A6NEE1 506 aa21.94■■□□□ 1.1
CIITA-210ENST00000575513 MAP3K4Q9Y6R4 1608 aa21.91■■□□□ 1.1
CIITA-210ENST00000575513 TEX14Q8IWB6 1497 aa21.9■■□□□ 1.1
CIITA-210ENST00000575513 CD109Q6YHK3 1445 aa21.89■■□□□ 1.1
CIITA-210ENST00000575513 MAGI3Q5TCQ9 1506 aa21.87■■□□□ 1.09
CIITA-210ENST00000575513 CDK11AQ9UQ88 783 aaPredicted RBP21.87■■□□□ 1.09
CIITA-210ENST00000575513 ATP1B4Q9UN42 357 aaPredicted RBP21.86■■□□□ 1.09
CIITA-210ENST00000575513 HECW1Q76N89 1606 aa21.86■■□□□ 1.09
CIITA-210ENST00000575513 CASKIN1Q8WXD9 1431 aa21.86■■□□□ 1.09
CIITA-210ENST00000575513 TSPOAP1O95153 1857 aa21.86■■□□□ 1.09
CIITA-210ENST00000575513 CFAP43Q8NDM7 1665 aa21.85■■□□□ 1.09
CIITA-210ENST00000575513 LOC105371045A0A1W2PR82 267 aa21.84■■□□□ 1.09
CIITA-210ENST00000575513 PPRC1Q5VV67 1664 aaKnown RBP21.84■■□□□ 1.09
CIITA-210ENST00000575513 CEP162Q5TB80 1403 aa21.81■■□□□ 1.08
CIITA-210ENST00000575513 CDK13Q14004 1512 aaKnown RBP21.8■■□□□ 1.08
CIITA-210ENST00000575513 ABCA9Q8IUA7 1624 aa21.8■■□□□ 1.08
CIITA-210ENST00000575513 PHLDB1Q86UU1 1377 aa21.79■■□□□ 1.08
CIITA-210ENST00000575513 KDM6BO15054 1643 aa21.79■■□□□ 1.08
CIITA-210ENST00000575513 FYCO1Q9BQS8 1478 aa21.77■■□□□ 1.08
CIITA-210ENST00000575513 CCDC18Q5T9S5 1454 aa21.77■■□□□ 1.07
CIITA-210ENST00000575513 COL17A1Q9UMD9 1497 aaPredicted RBP21.73■■□□□ 1.07
CIITA-210ENST00000575513 PCF11O94913 1555 aaKnown RBP21.73■■□□□ 1.07
CIITA-210ENST00000575513 TROQ12816 1431 aaPredicted RBP21.72■■□□□ 1.07
CIITA-210ENST00000575513 NEO1Q92859 1461 aa21.71■■□□□ 1.07
CIITA-210ENST00000575513 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.7■■□□□ 1.07
CIITA-210ENST00000575513 ARAP3Q8WWN8 1544 aa21.69■■□□□ 1.06
CIITA-210ENST00000575513 PLCH2O75038 1416 aa21.65■■□□□ 1.06
CIITA-210ENST00000575513 LRRIQ1Q96JM4 1722 aa21.64■■□□□ 1.06
CIITA-210ENST00000575513 TTC37Q6PGP7 1564 aa21.61■■□□□ 1.05
CIITA-210ENST00000575513 FANCAO15360 1455 aa21.61■■□□□ 1.05
CIITA-210ENST00000575513 KIF14Q15058 1648 aa21.61■■□□□ 1.05
CIITA-210ENST00000575513 EFCAB2Q5VUJ9 269 aa21.59■■□□□ 1.05
CIITA-210ENST00000575513 AKNAQ7Z591 1439 aa21.59■■□□□ 1.05
CIITA-210ENST00000575513 VPS8Q8N3P4 1428 aa21.58■■□□□ 1.05
CIITA-210ENST00000575513 CFAP74Q9C0B2 1584 aa21.57■■□□□ 1.04
CIITA-210ENST00000575513 RAPGEF3O95398 923 aa21.54■■□□□ 1.04
CIITA-210ENST00000575513 MTUS2Q5JR59 1369 aa21.53■■□□□ 1.04
CIITA-210ENST00000575513 DENND4BO75064 1496 aaPredicted RBP21.52■■□□□ 1.04
CIITA-210ENST00000575513 MYO5CQ9NQX4 1742 aa21.49■■□□□ 1.03
CIITA-210ENST00000575513 ADGRL1O94910 1474 aa21.48■■□□□ 1.03
CIITA-210ENST00000575513 SCAPERQ9BY12 1400 aa21.47■■□□□ 1.03
CIITA-210ENST00000575513 ARHGAP5Q13017 1502 aa21.47■■□□□ 1.03
CIITA-210ENST00000575513 MAP3K1Q13233 1512 aa21.45■■□□□ 1.02
CIITA-210ENST00000575513 EHBP1L1Q8N3D4 1523 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms