RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RUSC2Q8N2Y8 1516 aa31.48■■■□□ 2.63
CHD3-214ENST00000572579 CARMIL1Q5VZK9 1371 aa31.43■■■□□ 2.62
CHD3-214ENST00000572579 KIAA0586Q9BVV6 1533 aa31.43■■■□□ 2.62
CHD3-214ENST00000572579 CUL7Q14999 1698 aa31.35■■■□□ 2.61
CHD3-214ENST00000572579 ADCY10Q96PN6 1610 aa31.15■■■□□ 2.58
CHD3-214ENST00000572579 PTPRGP23470 1445 aa31.13■■■□□ 2.57
CHD3-214ENST00000572579 NPM1P06748 294 aaKnown RBP eCLIP31.12■■■□□ 2.57
CHD3-214ENST00000572579 RAPGEF2Q9Y4G8 1499 aa31.1■■■□□ 2.57
CHD3-214ENST00000572579 TTBK1Q5TCY1 1321 aaPredicted RBP31.1■■■□□ 2.57
CHD3-214ENST00000572579 FAM69CQ0P6D2 419 aa31.09■■■□□ 2.57
CHD3-214ENST00000572579 ABCC10Q5T3U5 1492 aa31.07■■■□□ 2.56
CHD3-214ENST00000572579 TNIKQ9UKE5 1360 aa31.06■■■□□ 2.56
CHD3-214ENST00000572579 IQGAP2Q13576 1575 aa31.05■■■□□ 2.56
CHD3-214ENST00000572579 MAPKBP1O60336 1514 aa31.04■■■□□ 2.56
CHD3-214ENST00000572579 DISP1Q96F81 1524 aa31.03■■■□□ 2.56
CHD3-214ENST00000572579 KIF13AQ9H1H9 1805 aa31.03■■■□□ 2.56
CHD3-214ENST00000572579 CARMIL2Q6F5E8 1435 aa31.03■■■□□ 2.56
CHD3-214ENST00000572579 UGGT2Q9NYU1 1516 aa30.94■■■□□ 2.54
CHD3-214ENST00000572579 DIP2BQ9P265 1576 aa30.92■■■□□ 2.54
CHD3-214ENST00000572579 PRXQ9BXM0 1461 aa30.91■■■□□ 2.54
CHD3-214ENST00000572579 ABCC2Q92887 1545 aa30.89■■■□□ 2.54
CHD3-214ENST00000572579 UACAQ9BZF9 1416 aa30.88■■■□□ 2.53
CHD3-214ENST00000572579 UHRF1BP1LA0JNW5 1464 aa30.87■■■□□ 2.53
CHD3-214ENST00000572579 ASXL2Q76L83 1435 aa30.81■■■□□ 2.52
CHD3-214ENST00000572579 KIAA0556O60303 1618 aa30.79■■■□□ 2.52
CHD3-214ENST00000572579 KDM5BQ9UGL1 1544 aa30.74■■■□□ 2.51
CHD3-214ENST00000572579 CSRNP3Q8WYN3 585 aa30.74■■■□□ 2.51
CHD3-214ENST00000572579 PLB1Q6P1J6 1458 aa30.72■■■□□ 2.51
CHD3-214ENST00000572579 AEBP2Q6ZN18 517 aaPredicted RBP30.68■■■□□ 2.5
CHD3-214ENST00000572579 CTTNBP2Q8WZ74 1663 aa30.64■■■□□ 2.5
CHD3-214ENST00000572579 GLI2P10070 1586 aa30.62■■■□□ 2.49
CHD3-214ENST00000572579 GOLGA3Q08378 1498 aa30.62■■■□□ 2.49
CHD3-214ENST00000572579 EPRSP07814 1512 aaKnown RBP30.62■■■□□ 2.49
CHD3-214ENST00000572579 TSPOAP1O95153 1857 aa30.61■■■□□ 2.49
CHD3-214ENST00000572579 P3H3Q8IVL6 736 aa30.59■■■□□ 2.49
CHD3-214ENST00000572579 ZCCHC11Q5TAX3 1644 aaKnown RBP30.58■■■□□ 2.49
CHD3-214ENST00000572579 ABCA8O94911 1581 aa30.56■■■□□ 2.48
CHD3-214ENST00000572579 FAM9AQ8IZU1 332 aaPredicted RBP30.54■■■□□ 2.48
CHD3-214ENST00000572579 PPRC1Q5VV67 1664 aaKnown RBP30.54■■■□□ 2.48
CHD3-214ENST00000572579 KDM6BO15054 1643 aa30.54■■■□□ 2.48
CHD3-214ENST00000572579 COL17A1Q9UMD9 1497 aaPredicted RBP30.51■■■□□ 2.48
CHD3-214ENST00000572579 WDR7Q9Y4E6 1490 aa30.49■■■□□ 2.47
CHD3-214ENST00000572579 EEA1Q15075 1411 aa30.47■■■□□ 2.47
CHD3-214ENST00000572579 KDM4FA0A1W2PPD8 638 aa30.45■■■□□ 2.47
CHD3-214ENST00000572579 ARID3CA6NKF2 412 aa30.45■■■□□ 2.47
CHD3-214ENST00000572579 KCNH8Q96L42 1107 aa30.44■■■□□ 2.46
CHD3-214ENST00000572579 MAP3K4Q9Y6R4 1608 aa30.43■■■□□ 2.46
CHD3-214ENST00000572579 CHIC1Q5VXU3 224 aa30.4■■■□□ 2.46
CHD3-214ENST00000572579 ATP10BO94823 1461 aa30.39■■■□□ 2.46
CHD3-214ENST00000572579 RANGAP1P46060 587 aaPredicted RBP30.38■■■□□ 2.45
CHD3-214ENST00000572579 SAMD9Q5K651 1589 aa30.37■■■□□ 2.45
CHD3-214ENST00000572579 CD109Q6YHK3 1445 aa30.32■■■□□ 2.44
CHD3-214ENST00000572579 TEX14Q8IWB6 1497 aa30.3■■■□□ 2.44
CHD3-214ENST00000572579 FHOD3Q2V2M9 1422 aa30.28■■■□□ 2.44
CHD3-214ENST00000572579 MAGI3Q5TCQ9 1506 aa30.27■■■□□ 2.44
CHD3-214ENST00000572579 EHMT2Q96KQ7 1210 aa30.23■■■□□ 2.43
CHD3-214ENST00000572579 KIF21BO75037 1637 aa30.21■■■□□ 2.43
CHD3-214ENST00000572579 NUP153P49790 1475 aaKnown RBP30.2■■■□□ 2.43
CHD3-214ENST00000572579 RAPGEF6Q8TEU7 1601 aa30.18■■■□□ 2.42
CHD3-214ENST00000572579 CFAP43Q8NDM7 1665 aa30.15■■■□□ 2.42
CHD3-214ENST00000572579 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.13■■■□□ 2.41
CHD3-214ENST00000572579 HNRNPUL2Q1KMD3 747 aaKnown RBP30.13■■■□□ 2.41
CHD3-214ENST00000572579 UBTFP17480 764 aaKnown RBP30.1■■■□□ 2.41
CHD3-214ENST00000572579 ADGRL1O94910 1474 aa30.07■■■□□ 2.4
CHD3-214ENST00000572579 ABCA9Q8IUA7 1624 aa30.04■■■□□ 2.4
CHD3-214ENST00000572579 EFCAB5A4FU69 1503 aa30.04■■■□□ 2.4
CHD3-214ENST00000572579 ARAP3Q8WWN8 1544 aa30.03■■■□□ 2.4
CHD3-214ENST00000572579 PLEKHD1A6NEE1 506 aa30.01■■■□□ 2.39
CHD3-214ENST00000572579 RAPGEF3O95398 923 aa29.98■■■□□ 2.39
CHD3-214ENST00000572579 ARHGAP35Q9NRY4 1499 aa29.97■■■□□ 2.39
CHD3-214ENST00000572579 PHLDB1Q86UU1 1377 aa29.94■■■□□ 2.38
CHD3-214ENST00000572579 CDK13Q14004 1512 aaKnown RBP29.91■■■□□ 2.38
CHD3-214ENST00000572579 NEO1Q92859 1461 aa29.9■■■□□ 2.38
CHD3-214ENST00000572579 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.86■■■□□ 2.37
CHD3-214ENST00000572579 ATP1B4Q9UN42 357 aaPredicted RBP29.84■■■□□ 2.37
CHD3-214ENST00000572579 FMN1Q68DA7 1419 aa29.83■■■□□ 2.37
CHD3-214ENST00000572579 FRMPD1Q5SYB0 1578 aa29.79■■■□□ 2.36
CHD3-214ENST00000572579 AKNAQ7Z591 1439 aa29.79■■■□□ 2.36
CHD3-214ENST00000572579 TTC37Q6PGP7 1564 aa29.77■■■□□ 2.36
CHD3-214ENST00000572579 FANCAO15360 1455 aa29.75■■■□□ 2.35
CHD3-214ENST00000572579 DENND4BO75064 1496 aaPredicted RBP29.71■■■□□ 2.35
CHD3-214ENST00000572579 PLCH2O75038 1416 aa29.71■■■□□ 2.35
CHD3-214ENST00000572579 HECW1Q76N89 1606 aa29.68■■■□□ 2.34
CHD3-214ENST00000572579 CDK11AQ9UQ88 783 aaPredicted RBP29.65■■■□□ 2.34
CHD3-214ENST00000572579 TROQ12816 1431 aaPredicted RBP29.62■■■□□ 2.33
CHD3-214ENST00000572579 SCAPERQ9BY12 1400 aa29.61■■■□□ 2.33
CHD3-214ENST00000572579 RICTORQ6R327 1708 aa29.6■■■□□ 2.33
CHD3-214ENST00000572579 CASKIN1Q8WXD9 1431 aa29.6■■■□□ 2.33
CHD3-214ENST00000572579 YEATS2Q9ULM3 1422 aa29.59■■■□□ 2.33
CHD3-214ENST00000572579 KIF14Q15058 1648 aa29.59■■■□□ 2.33
CHD3-214ENST00000572579 ARID4BQ4LE39 1312 aaPredicted RBP29.58■■■□□ 2.33
CHD3-214ENST00000572579 LRRIQ1Q96JM4 1722 aa29.57■■■□□ 2.32
CHD3-214ENST00000572579 ADAMTSL3P82987 1691 aa29.57■■■□□ 2.32
CHD3-214ENST00000572579 EFCAB2Q5VUJ9 269 aa29.57■■■□□ 2.32
CHD3-214ENST00000572579 HECW2Q9P2P5 1572 aa29.56■■■□□ 2.32
CHD3-214ENST00000572579 CFAP74Q9C0B2 1584 aa29.54■■■□□ 2.32
CHD3-214ENST00000572579 PTPRMP28827 1452 aa29.54■■■□□ 2.32
CHD3-214ENST00000572579 POGZQ7Z3K3 1410 aa29.54■■■□□ 2.32
CHD3-214ENST00000572579 ZMYM4Q5VZL5 1548 aa29.53■■■□□ 2.32
CHD3-214ENST00000572579 ARHGEF40Q8TER5 1519 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms