RNA–Protein interactions for RNA: ENST00000570827.6

USP43-203, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 2

Gene USP43, Length 3,624 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-203ENST00000570827 FBLN2P98095 1184 aa13.85□□□□□ -0.19
USP43-203ENST00000570827 RAPGEF2Q9Y4G8 1499 aa13.85□□□□□ -0.19
USP43-203ENST00000570827 ZNF326Q5BKZ1 582 aaKnown RBP13.85□□□□□ -0.19
USP43-203ENST00000570827 PEG3Q9GZU2 1588 aa13.82□□□□□ -0.2
USP43-203ENST00000570827 TONSLQ96HA7 1378 aa13.81□□□□□ -0.2
USP43-203ENST00000570827 KIF21BO75037 1637 aa13.8□□□□□ -0.2
USP43-203ENST00000570827 CCNB3Q8WWL7 1395 aa13.78□□□□□ -0.2
USP43-203ENST00000570827 RAB3GAP2Q9H2M9 1393 aa13.76□□□□□ -0.21
USP43-203ENST00000570827 RTL5Q5HYW3 569 aaPredicted RBP13.76□□□□□ -0.21
USP43-203ENST00000570827 B4GALNT3Q6L9W6 998 aa13.76□□□□□ -0.21
USP43-203ENST00000570827 NPM2Q86SE8 214 aaKnown RBP13.76□□□□□ -0.21
USP43-203ENST00000570827 RRP7BPQ9NSQ0 103 aa13.75□□□□□ -0.21
USP43-203ENST00000570827 NCAPD3P42695 1498 aa13.73□□□□□ -0.21
USP43-203ENST00000570827 ZNF777Q9ULD5 760 aaPredicted RBP13.72□□□□□ -0.21
USP43-203ENST00000570827 MRS2Q9HD23 443 aa13.7□□□□□ -0.22
USP43-203ENST00000570827 SALL2Q9Y467 1007 aaPredicted RBP13.7□□□□□ -0.22
USP43-203ENST00000570827 FOXD1Q16676 465 aa13.68□□□□□ -0.22
USP43-203ENST00000570827 KIF27Q86VH2 1401 aa13.67□□□□□ -0.22
USP43-203ENST00000570827 CUX1P39880 1505 aa13.66□□□□□ -0.22
USP43-203ENST00000570827 DNAJC5BQ9UF47 199 aa13.65□□□□□ -0.22
USP43-203ENST00000570827 TOP2BQ02880 1626 aa13.65□□□□□ -0.22
USP43-203ENST00000570827 CUX2O14529 1486 aa13.65□□□□□ -0.23
USP43-203ENST00000570827 DEKP35659 375 aaKnown RBP13.63□□□□□ -0.23
USP43-203ENST00000570827 PPP1R15AO75807 674 aaPredicted RBP13.63□□□□□ -0.23
USP43-203ENST00000570827 ANP32AP39687 249 aaKnown RBP13.63□□□□□ -0.23
USP43-203ENST00000570827 CCDC136Q96JN2 1154 aa13.63□□□□□ -0.23
USP43-203ENST00000570827 RTN4Q9NQC3 1192 aaKnown RBP13.63□□□□□ -0.23
USP43-203ENST00000570827 CADPSQ9ULU8 1353 aa13.62□□□□□ -0.23
USP43-203ENST00000570827 SETD5Q9C0A6 1442 aa13.62□□□□□ -0.23
USP43-203ENST00000570827 CFTRP13569 1480 aa13.61□□□□□ -0.23
USP43-203ENST00000570827 CCER2I3L3R5 266 aa13.6□□□□□ -0.23
USP43-203ENST00000570827 MSH5O43196 834 aa13.6□□□□□ -0.23
USP43-203ENST00000570827 HMGXB3Q12766 1538 aa13.6□□□□□ -0.23
USP43-203ENST00000570827 PPP4R2Q9NY27 417 aa13.58□□□□□ -0.24
USP43-203ENST00000570827 TDRD9Q8NDG6 1382 aaKnown RBP13.57□□□□□ -0.24
USP43-203ENST00000570827 ERICH3Q5RHP9 1530 aa13.57□□□□□ -0.24
USP43-203ENST00000570827 EIF4G2P78344 907 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP43-203ENST00000570827 ZBTB47Q9UFB7 747 aaPredicted RBP13.56□□□□□ -0.24
USP43-203ENST00000570827 SENP3Q9H4L4 574 aaPredicted RBP13.56□□□□□ -0.24
USP43-203ENST00000570827 NESP48681 1621 aa13.56□□□□□ -0.24
USP43-203ENST00000570827 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
USP43-203ENST00000570827 CARMIL1Q5VZK9 1371 aa13.55□□□□□ -0.24
USP43-203ENST00000570827 CC2D2AQ9P2K1 1620 aa13.55□□□□□ -0.24
USP43-203ENST00000570827 PRXQ9BXM0 1461 aa13.55□□□□□ -0.24
USP43-203ENST00000570827 ARAP1Q96P48 1450 aa13.54□□□□□ -0.24
USP43-203ENST00000570827 HSPA5P11021 654 aaKnown RBP13.54□□□□□ -0.24
USP43-203ENST00000570827 IGF1RP08069 1367 aa13.54□□□□□ -0.24
USP43-203ENST00000570827 MTUS2Q5JR59 1369 aa13.54□□□□□ -0.24
USP43-203ENST00000570827 MYT1LQ9UL68 1186 aa13.54□□□□□ -0.24
USP43-203ENST00000570827 NOP58Q9Y2X3 529 aaKnown RBP13.53□□□□□ -0.24
USP43-203ENST00000570827 FGD5Q6ZNL6 1462 aa13.52□□□□□ -0.24
USP43-203ENST00000570827 RAD54L2Q9Y4B4 1467 aa13.51□□□□□ -0.25
USP43-203ENST00000570827 KDM2AQ9Y2K7 1162 aa13.51□□□□□ -0.25
USP43-203ENST00000570827 LAS1LQ9Y4W2 734 aaKnown RBP13.51□□□□□ -0.25
USP43-203ENST00000570827 BIVM-ERCC5R4GMW8 1640 aa13.51□□□□□ -0.25
USP43-203ENST00000570827 FHOD3Q2V2M9 1422 aa13.5□□□□□ -0.25
USP43-203ENST00000570827 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
USP43-203ENST00000570827 EIF5BO60841 1220 aaKnown RBP13.49□□□□□ -0.25
USP43-203ENST00000570827 CCDC184Q52MB2 194 aa13.48□□□□□ -0.25
USP43-203ENST00000570827 WDR97A6NE52 1622 aa13.47□□□□□ -0.25
USP43-203ENST00000570827 TMC1Q8TDI8 760 aa13.47□□□□□ -0.25
USP43-203ENST00000570827 PHLDB1Q86UU1 1377 aa13.46□□□□□ -0.26
USP43-203ENST00000570827 RRBP1Q9P2E9 1410 aaKnown RBP13.46□□□□□ -0.26
USP43-203ENST00000570827 ARHGAP35Q9NRY4 1499 aa13.45□□□□□ -0.26
USP43-203ENST00000570827 TIMELESSQ9UNS1 1208 aa13.43□□□□□ -0.26
USP43-203ENST00000570827 FANCIQ9NVI1 1328 aa13.43□□□□□ -0.26
USP43-203ENST00000570827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.43□□□□□ -0.26
USP43-203ENST00000570827 PAK3O75914 559 aaPredicted RBP13.42□□□□□ -0.26
USP43-203ENST00000570827 SLC4A1APQ9BWU0 796 aaKnown RBP13.4□□□□□ -0.26
USP43-203ENST00000570827 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.39□□□□□ -0.27
USP43-203ENST00000570827 RGL3Q3MIN7 710 aa13.38□□□□□ -0.27
USP43-203ENST00000570827 L3MBTL2Q969R5 705 aa13.38□□□□□ -0.27
USP43-203ENST00000570827 NEFMP07197 916 aa13.38□□□□□ -0.27
USP43-203ENST00000570827 WASHC2AQ641Q2 1341 aa13.37□□□□□ -0.27
USP43-203ENST00000570827 PRKRIP1Q9H875 184 aaPredicted RBP13.35□□□□□ -0.27
USP43-203ENST00000570827 ARXQ96QS3 562 aa13.35□□□□□ -0.27
USP43-203ENST00000570827 POLA1P09884 1462 aaPredicted RBP13.34□□□□□ -0.27
USP43-203ENST00000570827 TOPBP1Q92547 1522 aa13.33□□□□□ -0.28
USP43-203ENST00000570827 ZNF644Q9H582 1327 aaPredicted RBP13.32□□□□□ -0.28
USP43-203ENST00000570827 FHAD1B1AJZ9 1412 aa13.32□□□□□ -0.28
USP43-203ENST00000570827 CHMP7Q8WUX9 453 aaPredicted RBP13.32□□□□□ -0.28
USP43-203ENST00000570827 MAP3K1Q13233 1512 aa13.32□□□□□ -0.28
USP43-203ENST00000570827 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
USP43-203ENST00000570827 IPO9Q96P70 1041 aaKnown RBP13.3□□□□□ -0.28
USP43-203ENST00000570827 MPHOSPH9Q99550 1183 aa13.3□□□□□ -0.28
USP43-203ENST00000570827 MAPKBP1O60336 1514 aa13.28□□□□□ -0.28
USP43-203ENST00000570827 LRRC9Q6ZRR7 1453 aa13.28□□□□□ -0.28
USP43-203ENST00000570827 C11orf95C9JLR9 678 aaPredicted RBP13.27□□□□□ -0.29
USP43-203ENST00000570827 CCDC18Q5T9S5 1454 aa13.27□□□□□ -0.29
USP43-203ENST00000570827 IL27Q8NEV9 243 aa13.26□□□□□ -0.29
USP43-203ENST00000570827 ERICH6BQ5W0A0 696 aa13.26□□□□□ -0.29
USP43-203ENST00000570827 SLC4A3P48751 1232 aa13.25□□□□□ -0.29
USP43-203ENST00000570827 PDS5BQ9NTI5 1447 aa13.25□□□□□ -0.29
USP43-203ENST00000570827 URB2Q14146 1524 aaKnown RBP13.25□□□□□ -0.29
USP43-203ENST00000570827 CFDP1Q9UEE9 299 aaPredicted RBP13.25□□□□□ -0.29
USP43-203ENST00000570827 NUDCQ9Y266 331 aa13.25□□□□□ -0.29
USP43-203ENST00000570827 TIAM1Q13009 1591 aa13.25□□□□□ -0.29
USP43-203ENST00000570827 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
USP43-203ENST00000570827 AKNAQ7Z591 1439 aa13.24□□□□□ -0.29
USP43-203ENST00000570827 ZBED9Q6R2W3 1325 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms