RNA–Protein interactions for RNA: ENST00000570758.1

CHD3-212, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 174 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-212ENST00000570758 CARMIL1Q5VZK9 1371 aa9.3□□□□□ -0.92
CHD3-212ENST00000570758 PRG4Q92954 1404 aaPredicted RBP9.3□□□□□ -0.92
CHD3-212ENST00000570758 TRHP20396 242 aaPredicted RBP9.28□□□□□ -0.92
CHD3-212ENST00000570758 KIAA0586Q9BVV6 1533 aa9.27□□□□□ -0.93
CHD3-212ENST00000570758 RAPGEF2Q9Y4G8 1499 aa9.22□□□□□ -0.93
CHD3-212ENST00000570758 IQGAP2Q13576 1575 aa9.2□□□□□ -0.94
CHD3-212ENST00000570758 ADCY10Q96PN6 1610 aa9.18□□□□□ -0.94
CHD3-212ENST00000570758 PRXQ9BXM0 1461 aa9.18□□□□□ -0.94
CHD3-212ENST00000570758 DISP1Q96F81 1524 aa9.17□□□□□ -0.94
CHD3-212ENST00000570758 PTPRGP23470 1445 aa9.16□□□□□ -0.94
CHD3-212ENST00000570758 CARMIL2Q6F5E8 1435 aa9.16□□□□□ -0.94
CHD3-212ENST00000570758 TNIKQ9UKE5 1360 aa9.16□□□□□ -0.94
CHD3-212ENST00000570758 TTBK1Q5TCY1 1321 aaPredicted RBP9.16□□□□□ -0.94
CHD3-212ENST00000570758 UGGT2Q9NYU1 1516 aa9.15□□□□□ -0.94
CHD3-212ENST00000570758 NPM1P06748 294 aaKnown RBP eCLIP9.13□□□□□ -0.95
CHD3-212ENST00000570758 CSRNP3Q8WYN3 585 aa9.13□□□□□ -0.95
CHD3-212ENST00000570758 KIAA0556O60303 1618 aa9.13□□□□□ -0.95
CHD3-212ENST00000570758 MAPKBP1O60336 1514 aa9.12□□□□□ -0.95
CHD3-212ENST00000570758 CTTNBP2Q8WZ74 1663 aa9.12□□□□□ -0.95
CHD3-212ENST00000570758 KIF13AQ9H1H9 1805 aa9.11□□□□□ -0.95
CHD3-212ENST00000570758 UHRF1BP1LA0JNW5 1464 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 ABCC10Q5T3U5 1492 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 FAM69CQ0P6D2 419 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 CHIC1Q5VXU3 224 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 FAM9AQ8IZU1 332 aaPredicted RBP9.1□□□□□ -0.95
CHD3-212ENST00000570758 EEA1Q15075 1411 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 UACAQ9BZF9 1416 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 ABCC2Q92887 1545 aa9.1□□□□□ -0.95
CHD3-212ENST00000570758 DIP2BQ9P265 1576 aa9.08□□□□□ -0.96
CHD3-212ENST00000570758 GOLGA3Q08378 1498 aa9.08□□□□□ -0.96
CHD3-212ENST00000570758 PLB1Q6P1J6 1458 aa9.06□□□□□ -0.96
CHD3-212ENST00000570758 ASXL2Q76L83 1435 aa9.05□□□□□ -0.96
CHD3-212ENST00000570758 KDM5BQ9UGL1 1544 aa9.05□□□□□ -0.96
CHD3-212ENST00000570758 P3H3Q8IVL6 736 aa9.05□□□□□ -0.96
CHD3-212ENST00000570758 ABCA8O94911 1581 aa9.04□□□□□ -0.96
CHD3-212ENST00000570758 ZCCHC11Q5TAX3 1644 aaKnown RBP9.04□□□□□ -0.96
CHD3-212ENST00000570758 KIF21BO75037 1637 aa9.02□□□□□ -0.96
CHD3-212ENST00000570758 SAMD9Q5K651 1589 aa9.02□□□□□ -0.97
CHD3-212ENST00000570758 GLI2P10070 1586 aa9.01□□□□□ -0.97
CHD3-212ENST00000570758 RANGAP1P46060 587 aaPredicted RBP9.01□□□□□ -0.97
CHD3-212ENST00000570758 EPRSP07814 1512 aaKnown RBP9□□□□□ -0.97
CHD3-212ENST00000570758 TSPOAP1O95153 1857 aa9□□□□□ -0.97
CHD3-212ENST00000570758 EHMT2Q96KQ7 1210 aa9□□□□□ -0.97
CHD3-212ENST00000570758 ARID3CA6NKF2 412 aa8.99□□□□□ -0.97
CHD3-212ENST00000570758 FHOD3Q2V2M9 1422 aa8.98□□□□□ -0.97
CHD3-212ENST00000570758 PPRC1Q5VV67 1664 aaKnown RBP8.98□□□□□ -0.97
CHD3-212ENST00000570758 WDR7Q9Y4E6 1490 aa8.98□□□□□ -0.97
CHD3-212ENST00000570758 ATP10BO94823 1461 aa8.97□□□□□ -0.97
CHD3-212ENST00000570758 KDM6BO15054 1643 aa8.96□□□□□ -0.98
CHD3-212ENST00000570758 MAP3K4Q9Y6R4 1608 aa8.96□□□□□ -0.98
CHD3-212ENST00000570758 UBTFP17480 764 aaKnown RBP8.96□□□□□ -0.98
CHD3-212ENST00000570758 RAPGEF6Q8TEU7 1601 aa8.95□□□□□ -0.98
CHD3-212ENST00000570758 KCNH8Q96L42 1107 aa8.95□□□□□ -0.98
CHD3-212ENST00000570758 EFCAB5A4FU69 1503 aa8.95□□□□□ -0.98
CHD3-212ENST00000570758 NUP153P49790 1475 aaKnown RBP8.93□□□□□ -0.98
CHD3-212ENST00000570758 COL17A1Q9UMD9 1497 aaPredicted RBP8.93□□□□□ -0.98
CHD3-212ENST00000570758 CD109Q6YHK3 1445 aa8.92□□□□□ -0.98
CHD3-212ENST00000570758 TEX14Q8IWB6 1497 aa8.91□□□□□ -0.98
CHD3-212ENST00000570758 ARHGAP35Q9NRY4 1499 aa8.91□□□□□ -0.98
CHD3-212ENST00000570758 MAGI3Q5TCQ9 1506 aa8.9□□□□□ -0.98
CHD3-212ENST00000570758 CFAP43Q8NDM7 1665 aa8.9□□□□□ -0.98
CHD3-212ENST00000570758 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.89□□□□□ -0.99
CHD3-212ENST00000570758 HNRNPUL2Q1KMD3 747 aaKnown RBP8.89□□□□□ -0.99
CHD3-212ENST00000570758 AEBP2Q6ZN18 517 aaPredicted RBP8.88□□□□□ -0.99
CHD3-212ENST00000570758 ABCA9Q8IUA7 1624 aa8.87□□□□□ -0.99
CHD3-212ENST00000570758 CDK13Q14004 1512 aaKnown RBP8.87□□□□□ -0.99
CHD3-212ENST00000570758 PLEKHD1A6NEE1 506 aa8.86□□□□□ -0.99
CHD3-212ENST00000570758 FMN1Q68DA7 1419 aa8.86□□□□□ -0.99
CHD3-212ENST00000570758 KDM4FA0A1W2PPD8 638 aa8.85□□□□□ -0.99
CHD3-212ENST00000570758 ATP1B4Q9UN42 357 aaPredicted RBP8.84□□□□□ -0.99
CHD3-212ENST00000570758 HECW1Q76N89 1606 aa8.83□□□□□ -1
CHD3-212ENST00000570758 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.83□□□□□ -1
CHD3-212ENST00000570758 ARAP3Q8WWN8 1544 aa8.82□□□□□ -1
CHD3-212ENST00000570758 TTC37Q6PGP7 1564 aa8.82□□□□□ -1
CHD3-212ENST00000570758 CLIP1P30622 1438 aa8.81□□□□□ -1
CHD3-212ENST00000570758 PHLDB1Q86UU1 1377 aa8.81□□□□□ -1
CHD3-212ENST00000570758 NEO1Q92859 1461 aa8.81□□□□□ -1
CHD3-212ENST00000570758 PCF11O94913 1555 aaKnown RBP8.81□□□□□ -1
CHD3-212ENST00000570758 LRRIQ1Q96JM4 1722 aa8.8□□□□□ -1
CHD3-212ENST00000570758 RAPGEF3O95398 923 aa8.8□□□□□ -1
CHD3-212ENST00000570758 ADGRL1O94910 1474 aa8.79□□□□□ -1
CHD3-212ENST00000570758 TROQ12816 1431 aaPredicted RBP8.79□□□□□ -1
CHD3-212ENST00000570758 CASKIN1Q8WXD9 1431 aa8.79□□□□□ -1
CHD3-212ENST00000570758 FRMPD1Q5SYB0 1578 aa8.78□□□□□ -1
CHD3-212ENST00000570758 AKNAQ7Z591 1439 aa8.78□□□□□ -1
CHD3-212ENST00000570758 FANCAO15360 1455 aa8.77□□□□□ -1
CHD3-212ENST00000570758 KIF14Q15058 1648 aa8.77□□□□□ -1.01
CHD3-212ENST00000570758 CDK11AQ9UQ88 783 aaPredicted RBP8.77□□□□□ -1.01
CHD3-212ENST00000570758 PLCH2O75038 1416 aa8.77□□□□□ -1.01
CHD3-212ENST00000570758 CFAP74Q9C0B2 1584 aa8.76□□□□□ -1.01
CHD3-212ENST00000570758 DENND4BO75064 1496 aaPredicted RBP8.76□□□□□ -1.01
CHD3-212ENST00000570758 FYCO1Q9BQS8 1478 aa8.76□□□□□ -1.01
CHD3-212ENST00000570758 CEP162Q5TB80 1403 aa8.75□□□□□ -1.01
CHD3-212ENST00000570758 LOC105371045A0A1W2PR82 267 aa8.75□□□□□ -1.01
CHD3-212ENST00000570758 CCDC18Q5T9S5 1454 aa8.75□□□□□ -1.01
CHD3-212ENST00000570758 RICTORQ6R327 1708 aa8.74□□□□□ -1.01
CHD3-212ENST00000570758 SCAPERQ9BY12 1400 aa8.73□□□□□ -1.01
CHD3-212ENST00000570758 EFCAB2Q5VUJ9 269 aa8.73□□□□□ -1.01
CHD3-212ENST00000570758 MYO5CQ9NQX4 1742 aa8.73□□□□□ -1.01
CHD3-212ENST00000570758 POGZQ7Z3K3 1410 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms