RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 TRHP20396 242 aaPredicted RBP24.45■■□□□ 1.5
COMMD4-225ENST00000569245 SHROOM2Q13796 1616 aa24.45■■□□□ 1.5
COMMD4-225ENST00000569245 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.5
COMMD4-225ENST00000569245 KIAA0586Q9BVV6 1533 aa24.42■■□□□ 1.5
COMMD4-225ENST00000569245 RAPGEF2Q9Y4G8 1499 aa24.34■■□□□ 1.49
COMMD4-225ENST00000569245 TTBK1Q5TCY1 1321 aaPredicted RBP24.25■■□□□ 1.47
COMMD4-225ENST00000569245 IQGAP2Q13576 1575 aa24.22■■□□□ 1.47
COMMD4-225ENST00000569245 CARMIL2Q6F5E8 1435 aa24.22■■□□□ 1.47
COMMD4-225ENST00000569245 NPM1P06748 294 aaKnown RBP eCLIP24.2■■□□□ 1.46
COMMD4-225ENST00000569245 CSRNP3Q8WYN3 585 aa24.2■■□□□ 1.46
COMMD4-225ENST00000569245 PTPRGP23470 1445 aa24.18■■□□□ 1.46
COMMD4-225ENST00000569245 PRXQ9BXM0 1461 aa24.17■■□□□ 1.46
COMMD4-225ENST00000569245 FAM9AQ8IZU1 332 aaPredicted RBP24.15■■□□□ 1.46
COMMD4-225ENST00000569245 TNIKQ9UKE5 1360 aa24.15■■□□□ 1.46
COMMD4-225ENST00000569245 CHIC1Q5VXU3 224 aa24.13■■□□□ 1.45
COMMD4-225ENST00000569245 EEA1Q15075 1411 aa24.1■■□□□ 1.45
COMMD4-225ENST00000569245 DISP1Q96F81 1524 aa24.07■■□□□ 1.44
COMMD4-225ENST00000569245 UGGT2Q9NYU1 1516 aa24.07■■□□□ 1.44
COMMD4-225ENST00000569245 ADCY10Q96PN6 1610 aa24.03■■□□□ 1.44
COMMD4-225ENST00000569245 CTTNBP2Q8WZ74 1663 aa23.99■■□□□ 1.43
COMMD4-225ENST00000569245 GOLGA3Q08378 1498 aa23.98■■□□□ 1.43
COMMD4-225ENST00000569245 KIAA0556O60303 1618 aa23.97■■□□□ 1.43
COMMD4-225ENST00000569245 FAM69CQ0P6D2 419 aa23.97■■□□□ 1.43
COMMD4-225ENST00000569245 UACAQ9BZF9 1416 aa23.97■■□□□ 1.43
COMMD4-225ENST00000569245 MAPKBP1O60336 1514 aa23.93■■□□□ 1.42
COMMD4-225ENST00000569245 RANGAP1P46060 587 aaPredicted RBP23.92■■□□□ 1.42
COMMD4-225ENST00000569245 P3H3Q8IVL6 736 aa23.92■■□□□ 1.42
COMMD4-225ENST00000569245 ABCC2Q92887 1545 aa23.92■■□□□ 1.42
COMMD4-225ENST00000569245 EHMT2Q96KQ7 1210 aa23.91■■□□□ 1.42
COMMD4-225ENST00000569245 UHRF1BP1LA0JNW5 1464 aa23.9■■□□□ 1.42
COMMD4-225ENST00000569245 ABCC10Q5T3U5 1492 aa23.89■■□□□ 1.42
COMMD4-225ENST00000569245 PLB1Q6P1J6 1458 aa23.83■■□□□ 1.41
COMMD4-225ENST00000569245 UBTFP17480 764 aaKnown RBP23.83■■□□□ 1.41
COMMD4-225ENST00000569245 ASXL2Q76L83 1435 aa23.82■■□□□ 1.4
COMMD4-225ENST00000569245 KIF21BO75037 1637 aa23.81■■□□□ 1.4
COMMD4-225ENST00000569245 KIF13AQ9H1H9 1805 aa23.8■■□□□ 1.4
COMMD4-225ENST00000569245 KDM5BQ9UGL1 1544 aa23.79■■□□□ 1.4
COMMD4-225ENST00000569245 DIP2BQ9P265 1576 aa23.79■■□□□ 1.4
COMMD4-225ENST00000569245 ARID3CA6NKF2 412 aa23.74■■□□□ 1.39
COMMD4-225ENST00000569245 ABCA8O94911 1581 aa23.73■■□□□ 1.39
COMMD4-225ENST00000569245 ZCCHC11Q5TAX3 1644 aaKnown RBP23.71■■□□□ 1.39
COMMD4-225ENST00000569245 SAMD9Q5K651 1589 aa23.71■■□□□ 1.39
COMMD4-225ENST00000569245 FHOD3Q2V2M9 1422 aa23.68■■□□□ 1.38
COMMD4-225ENST00000569245 KCNH8Q96L42 1107 aa23.67■■□□□ 1.38
COMMD4-225ENST00000569245 EPRSP07814 1512 aaKnown RBP23.65■■□□□ 1.38
COMMD4-225ENST00000569245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.65■■□□□ 1.38
COMMD4-225ENST00000569245 HNRNPUL2Q1KMD3 747 aaKnown RBP23.65■■□□□ 1.38
COMMD4-225ENST00000569245 WDR7Q9Y4E6 1490 aa23.64■■□□□ 1.38
COMMD4-225ENST00000569245 GLI2P10070 1586 aa23.62■■□□□ 1.37
COMMD4-225ENST00000569245 TSPOAP1O95153 1857 aa23.62■■□□□ 1.37
COMMD4-225ENST00000569245 EFCAB5A4FU69 1503 aa23.61■■□□□ 1.37
COMMD4-225ENST00000569245 ATP10BO94823 1461 aa23.6■■□□□ 1.37
COMMD4-225ENST00000569245 RAPGEF6Q8TEU7 1601 aa23.57■■□□□ 1.36
COMMD4-225ENST00000569245 ATP1B4Q9UN42 357 aaPredicted RBP23.52■■□□□ 1.36
COMMD4-225ENST00000569245 NUP153P49790 1475 aaKnown RBP23.51■■□□□ 1.35
COMMD4-225ENST00000569245 KDM6BO15054 1643 aa23.51■■□□□ 1.35
COMMD4-225ENST00000569245 CD109Q6YHK3 1445 aa23.5■■□□□ 1.35
COMMD4-225ENST00000569245 TEX14Q8IWB6 1497 aa23.49■■□□□ 1.35
COMMD4-225ENST00000569245 MAP3K4Q9Y6R4 1608 aa23.48■■□□□ 1.35
COMMD4-225ENST00000569245 ARHGAP35Q9NRY4 1499 aa23.48■■□□□ 1.35
COMMD4-225ENST00000569245 PLEKHD1A6NEE1 506 aa23.47■■□□□ 1.35
COMMD4-225ENST00000569245 FMN1Q68DA7 1419 aa23.46■■□□□ 1.35
COMMD4-225ENST00000569245 PPRC1Q5VV67 1664 aaKnown RBP23.44■■□□□ 1.34
COMMD4-225ENST00000569245 AEBP2Q6ZN18 517 aaPredicted RBP23.4■■□□□ 1.34
COMMD4-225ENST00000569245 MAGI3Q5TCQ9 1506 aa23.39■■□□□ 1.34
COMMD4-225ENST00000569245 CFAP43Q8NDM7 1665 aa23.38■■□□□ 1.33
COMMD4-225ENST00000569245 COL17A1Q9UMD9 1497 aaPredicted RBP23.36■■□□□ 1.33
COMMD4-225ENST00000569245 CDK13Q14004 1512 aaKnown RBP23.33■■□□□ 1.33
COMMD4-225ENST00000569245 CDK11AQ9UQ88 783 aaPredicted RBP23.33■■□□□ 1.33
COMMD4-225ENST00000569245 CLIP1P30622 1438 aa23.33■■□□□ 1.32
COMMD4-225ENST00000569245 HECW1Q76N89 1606 aa23.31■■□□□ 1.32
COMMD4-225ENST00000569245 ABCA9Q8IUA7 1624 aa23.3■■□□□ 1.32
COMMD4-225ENST00000569245 PHLDB1Q86UU1 1377 aa23.25■■□□□ 1.31
COMMD4-225ENST00000569245 CASKIN1Q8WXD9 1431 aa23.24■■□□□ 1.31
COMMD4-225ENST00000569245 LOC105371045A0A1W2PR82 267 aa23.21■■□□□ 1.31
COMMD4-225ENST00000569245 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.2■■□□□ 1.3
COMMD4-225ENST00000569245 NEO1Q92859 1461 aa23.2■■□□□ 1.3
COMMD4-225ENST00000569245 ARAP3Q8WWN8 1544 aa23.19■■□□□ 1.3
COMMD4-225ENST00000569245 RAPGEF3O95398 923 aa23.18■■□□□ 1.3
COMMD4-225ENST00000569245 PCF11O94913 1555 aaKnown RBP23.17■■□□□ 1.3
COMMD4-225ENST00000569245 CCDC18Q5T9S5 1454 aa23.16■■□□□ 1.3
COMMD4-225ENST00000569245 TROQ12816 1431 aaPredicted RBP23.16■■□□□ 1.3
COMMD4-225ENST00000569245 CEP162Q5TB80 1403 aa23.16■■□□□ 1.3
COMMD4-225ENST00000569245 KDM4FA0A1W2PPD8 638 aa23.15■■□□□ 1.3
COMMD4-225ENST00000569245 FANCAO15360 1455 aa23.15■■□□□ 1.3
COMMD4-225ENST00000569245 TTC37Q6PGP7 1564 aa23.14■■□□□ 1.3
COMMD4-225ENST00000569245 FYCO1Q9BQS8 1478 aa23.14■■□□□ 1.29
COMMD4-225ENST00000569245 AKNAQ7Z591 1439 aa23.12■■□□□ 1.29
COMMD4-225ENST00000569245 PLCH2O75038 1416 aa23.11■■□□□ 1.29
COMMD4-225ENST00000569245 EFCAB2Q5VUJ9 269 aa23.09■■□□□ 1.29
COMMD4-225ENST00000569245 KIF14Q15058 1648 aa23.08■■□□□ 1.29
COMMD4-225ENST00000569245 LRRIQ1Q96JM4 1722 aa23.08■■□□□ 1.28
COMMD4-225ENST00000569245 DENND4BO75064 1496 aaPredicted RBP23.07■■□□□ 1.28
COMMD4-225ENST00000569245 CFAP74Q9C0B2 1584 aa23.06■■□□□ 1.28
COMMD4-225ENST00000569245 ADGRL1O94910 1474 aa23.04■■□□□ 1.28
COMMD4-225ENST00000569245 SCAPERQ9BY12 1400 aa23.01■■□□□ 1.27
COMMD4-225ENST00000569245 ARHGAP5Q13017 1502 aa23■■□□□ 1.27
COMMD4-225ENST00000569245 MYO5CQ9NQX4 1742 aa22.98■■□□□ 1.27
COMMD4-225ENST00000569245 FRMPD1Q5SYB0 1578 aa22.97■■□□□ 1.27
COMMD4-225ENST00000569245 ARID4BQ4LE39 1312 aaPredicted RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms