RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 ADAMTS12P58397 1594 aa8.4□□□□□ -1.06
CLK3-219ENST00000567805 ERICH3Q5RHP9 1530 aa8.39□□□□□ -1.07
CLK3-219ENST00000567805 GRIN2AQ12879 1464 aa8.38□□□□□ -1.07
CLK3-219ENST00000567805 ARAP1Q96P48 1450 aa8.38□□□□□ -1.07
CLK3-219ENST00000567805 FHAD1B1AJZ9 1412 aa8.36□□□□□ -1.07
CLK3-219ENST00000567805 CYB5RLQ6IPT4 315 aa8.35□□□□□ -1.07
CLK3-219ENST00000567805 CEP170Q5SW79 1584 aa8.35□□□□□ -1.07
CLK3-219ENST00000567805 NUP160Q12769 1436 aa8.34□□□□□ -1.07
CLK3-219ENST00000567805 SHROOM2Q13796 1616 aa8.32□□□□□ -1.08
CLK3-219ENST00000567805 DCAF8L1A6NGE4 600 aa8.32□□□□□ -1.08
CLK3-219ENST00000567805 CUL7Q14999 1698 aa8.32□□□□□ -1.08
CLK3-219ENST00000567805 KIF27Q86VH2 1401 aa8.3□□□□□ -1.08
CLK3-219ENST00000567805 RNF39Q9H2S5 420 aa8.3□□□□□ -1.08
CLK3-219ENST00000567805 RUSC2Q8N2Y8 1516 aa8.29□□□□□ -1.08
CLK3-219ENST00000567805 ERCC6L2Q5T890 1561 aa8.28□□□□□ -1.08
CLK3-219ENST00000567805 IGF1RP08069 1367 aa8.27□□□□□ -1.09
CLK3-219ENST00000567805 PRG4Q92954 1404 aaPredicted RBP8.23□□□□□ -1.09
CLK3-219ENST00000567805 TRHP20396 242 aaPredicted RBP8.23□□□□□ -1.09
CLK3-219ENST00000567805 JPH4Q96JJ6 628 aa8.23□□□□□ -1.09
CLK3-219ENST00000567805 KIAA0586Q9BVV6 1533 aa8.23□□□□□ -1.09
CLK3-219ENST00000567805 CARMIL1Q5VZK9 1371 aa8.22□□□□□ -1.09
CLK3-219ENST00000567805 IQGAP2Q13576 1575 aa8.19□□□□□ -1.1
CLK3-219ENST00000567805 HOXD11P31277 338 aaPredicted RBP8.19□□□□□ -1.1
CLK3-219ENST00000567805 RAPGEF2Q9Y4G8 1499 aa8.18□□□□□ -1.1
CLK3-219ENST00000567805 ADCY10Q96PN6 1610 aa8.17□□□□□ -1.1
CLK3-219ENST00000567805 CTTNBP2Q8WZ74 1663 aa8.17□□□□□ -1.1
CLK3-219ENST00000567805 KIF13AQ9H1H9 1805 aa8.17□□□□□ -1.1
CLK3-219ENST00000567805 CARMIL2Q6F5E8 1435 aa8.15□□□□□ -1.1
CLK3-219ENST00000567805 MAPKBP1O60336 1514 aa8.13□□□□□ -1.11
CLK3-219ENST00000567805 UGGT2Q9NYU1 1516 aa8.13□□□□□ -1.11
CLK3-219ENST00000567805 C1QBPQ07021 282 aaKnown RBP8.13□□□□□ -1.11
CLK3-219ENST00000567805 NPM1P06748 294 aaKnown RBP eCLIP8.12□□□□□ -1.11
CLK3-219ENST00000567805 DISP1Q96F81 1524 aa8.12□□□□□ -1.11
CLK3-219ENST00000567805 PRXQ9BXM0 1461 aa8.12□□□□□ -1.11
CLK3-219ENST00000567805 PTPRGP23470 1445 aa8.12□□□□□ -1.11
CLK3-219ENST00000567805 TNIKQ9UKE5 1360 aa8.11□□□□□ -1.11
CLK3-219ENST00000567805 KIAA0556O60303 1618 aa8.11□□□□□ -1.11
CLK3-219ENST00000567805 DIP2BQ9P265 1576 aa8.1□□□□□ -1.11
CLK3-219ENST00000567805 PPP4R3CPQ6ZMV5 832 aa8.1□□□□□ -1.11
CLK3-219ENST00000567805 ABCC10Q5T3U5 1492 aa8.09□□□□□ -1.11
CLK3-219ENST00000567805 ABCC2Q92887 1545 aa8.08□□□□□ -1.12
CLK3-219ENST00000567805 UHRF1BP1LA0JNW5 1464 aa8.08□□□□□ -1.12
CLK3-219ENST00000567805 EEA1Q15075 1411 aa8.08□□□□□ -1.12
CLK3-219ENST00000567805 GOLGA3Q08378 1498 aa8.07□□□□□ -1.12
CLK3-219ENST00000567805 UACAQ9BZF9 1416 aa8.06□□□□□ -1.12
CLK3-219ENST00000567805 TSPOAP1O95153 1857 aa8.06□□□□□ -1.12
CLK3-219ENST00000567805 ZCCHC11Q5TAX3 1644 aaKnown RBP8.06□□□□□ -1.12
CLK3-219ENST00000567805 TTBK1Q5TCY1 1321 aaPredicted RBP8.05□□□□□ -1.12
CLK3-219ENST00000567805 FAM69CQ0P6D2 419 aa8.05□□□□□ -1.12
CLK3-219ENST00000567805 CSRNP3Q8WYN3 585 aa8.05□□□□□ -1.12
CLK3-219ENST00000567805 KDM5BQ9UGL1 1544 aa8.04□□□□□ -1.12
CLK3-219ENST00000567805 PLB1Q6P1J6 1458 aa8.04□□□□□ -1.12
CLK3-219ENST00000567805 ASXL2Q76L83 1435 aa8.03□□□□□ -1.12
CLK3-219ENST00000567805 GLI2P10070 1586 aa8.03□□□□□ -1.12
CLK3-219ENST00000567805 KIF21BO75037 1637 aa8.03□□□□□ -1.12
CLK3-219ENST00000567805 ABCA8O94911 1581 aa8.02□□□□□ -1.13
CLK3-219ENST00000567805 SAMD9Q5K651 1589 aa8.02□□□□□ -1.13
CLK3-219ENST00000567805 RNF216Q9NWF9 866 aaPredicted RBP8.02□□□□□ -1.13
CLK3-219ENST00000567805 PPRC1Q5VV67 1664 aaKnown RBP8.01□□□□□ -1.13
CLK3-219ENST00000567805 KDM6BO15054 1643 aa8□□□□□ -1.13
CLK3-219ENST00000567805 MAP3K4Q9Y6R4 1608 aa8□□□□□ -1.13
CLK3-219ENST00000567805 CNKSR2Q8WXI2 1034 aa8□□□□□ -1.13
CLK3-219ENST00000567805 EPRSP07814 1512 aaKnown RBP7.99□□□□□ -1.13
CLK3-219ENST00000567805 WDR7Q9Y4E6 1490 aa7.99□□□□□ -1.13
CLK3-219ENST00000567805 FAM9AQ8IZU1 332 aaPredicted RBP7.98□□□□□ -1.13
CLK3-219ENST00000567805 CFAP43Q8NDM7 1665 aa7.98□□□□□ -1.13
CLK3-219ENST00000567805 RAPGEF6Q8TEU7 1601 aa7.97□□□□□ -1.13
CLK3-219ENST00000567805 EFCAB5A4FU69 1503 aa7.97□□□□□ -1.13
CLK3-219ENST00000567805 POTEHQ6S545 545 aa7.96□□□□□ -1.14
CLK3-219ENST00000567805 TEX14Q8IWB6 1497 aa7.95□□□□□ -1.14
CLK3-219ENST00000567805 P3H3Q8IVL6 736 aa7.95□□□□□ -1.14
CLK3-219ENST00000567805 ATP10BO94823 1461 aa7.94□□□□□ -1.14
CLK3-219ENST00000567805 FHOD3Q2V2M9 1422 aa7.93□□□□□ -1.14
CLK3-219ENST00000567805 MAGI3Q5TCQ9 1506 aa7.92□□□□□ -1.14
CLK3-219ENST00000567805 ABCA9Q8IUA7 1624 aa7.92□□□□□ -1.14
CLK3-219ENST00000567805 RANGAP1P46060 587 aaPredicted RBP7.91□□□□□ -1.14
CLK3-219ENST00000567805 CD109Q6YHK3 1445 aa7.91□□□□□ -1.14
CLK3-219ENST00000567805 NUP153P49790 1475 aaKnown RBP7.91□□□□□ -1.14
CLK3-219ENST00000567805 UBTFP17480 764 aaKnown RBP7.9□□□□□ -1.14
CLK3-219ENST00000567805 KCNH8Q96L42 1107 aa7.9□□□□□ -1.14
CLK3-219ENST00000567805 COL17A1Q9UMD9 1497 aaPredicted RBP7.89□□□□□ -1.15
CLK3-219ENST00000567805 ARID3CA6NKF2 412 aa7.89□□□□□ -1.15
CLK3-219ENST00000567805 ARHGAP35Q9NRY4 1499 aa7.87□□□□□ -1.15
CLK3-219ENST00000567805 FMN1Q68DA7 1419 aa7.87□□□□□ -1.15
CLK3-219ENST00000567805 EHMT2Q96KQ7 1210 aa7.87□□□□□ -1.15
CLK3-219ENST00000567805 HECW1Q76N89 1606 aa7.87□□□□□ -1.15
CLK3-219ENST00000567805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.86□□□□□ -1.15
CLK3-219ENST00000567805 HNRNPUL2Q1KMD3 747 aaKnown RBP7.86□□□□□ -1.15
CLK3-219ENST00000567805 ARAP3Q8WWN8 1544 aa7.86□□□□□ -1.15
CLK3-219ENST00000567805 CFAP74Q9C0B2 1584 aa7.85□□□□□ -1.15
CLK3-219ENST00000567805 PHLDB1Q86UU1 1377 aa7.84□□□□□ -1.15
CLK3-219ENST00000567805 CDK13Q14004 1512 aaKnown RBP7.84□□□□□ -1.15
CLK3-219ENST00000567805 LRRIQ1Q96JM4 1722 aa7.84□□□□□ -1.15
CLK3-219ENST00000567805 NEO1Q92859 1461 aa7.84□□□□□ -1.15
CLK3-219ENST00000567805 PLEKHD1A6NEE1 506 aa7.84□□□□□ -1.15
CLK3-219ENST00000567805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.83□□□□□ -1.16
CLK3-219ENST00000567805 KDM4FA0A1W2PPD8 638 aa7.83□□□□□ -1.16
CLK3-219ENST00000567805 TTC37Q6PGP7 1564 aa7.83□□□□□ -1.16
CLK3-219ENST00000567805 MYO5CQ9NQX4 1742 aa7.82□□□□□ -1.16
CLK3-219ENST00000567805 ADGRL1O94910 1474 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms