RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 KIF27Q86VH2 1401 aa26.22■■□□□ 1.79
CLN3-228ENST00000567804 KIF13AQ9H1H9 1805 aa26.22■■□□□ 1.79
CLN3-228ENST00000567804 IGF1RP08069 1367 aa26.2■■□□□ 1.78
CLN3-228ENST00000567804 KIAA0586Q9BVV6 1533 aa26.15■■□□□ 1.78
CLN3-228ENST00000567804 ADCY10Q96PN6 1610 aa26.08■■□□□ 1.77
CLN3-228ENST00000567804 MAPKBP1O60336 1514 aa26.04■■□□□ 1.76
CLN3-228ENST00000567804 CARMIL1Q5VZK9 1371 aa26.02■■□□□ 1.76
CLN3-228ENST00000567804 DIP2BQ9P265 1576 aa25.99■■□□□ 1.75
CLN3-228ENST00000567804 ABCC10Q5T3U5 1492 aa25.98■■□□□ 1.75
CLN3-228ENST00000567804 NPM1P06748 294 aaKnown RBP eCLIP25.96■■□□□ 1.75
CLN3-228ENST00000567804 IQGAP2Q13576 1575 aa25.95■■□□□ 1.74
CLN3-228ENST00000567804 FAM69CQ0P6D2 419 aa25.89■■□□□ 1.74
CLN3-228ENST00000567804 AEBP2Q6ZN18 517 aaPredicted RBP25.88■■□□□ 1.73
CLN3-228ENST00000567804 PTPRGP23470 1445 aa25.88■■□□□ 1.73
CLN3-228ENST00000567804 CARMIL2Q6F5E8 1435 aa25.88■■□□□ 1.73
CLN3-228ENST00000567804 TNIKQ9UKE5 1360 aa25.84■■□□□ 1.73
CLN3-228ENST00000567804 TSPOAP1O95153 1857 aa25.83■■□□□ 1.73
CLN3-228ENST00000567804 RAPGEF2Q9Y4G8 1499 aa25.82■■□□□ 1.72
CLN3-228ENST00000567804 DISP1Q96F81 1524 aa25.79■■□□□ 1.72
CLN3-228ENST00000567804 ABCC2Q92887 1545 aa25.78■■□□□ 1.72
CLN3-228ENST00000567804 TTBK1Q5TCY1 1321 aaPredicted RBP25.77■■□□□ 1.72
CLN3-228ENST00000567804 UGGT2Q9NYU1 1516 aa25.77■■□□□ 1.72
CLN3-228ENST00000567804 KDM6BO15054 1643 aa25.75■■□□□ 1.71
CLN3-228ENST00000567804 CTTNBP2Q8WZ74 1663 aa25.74■■□□□ 1.71
CLN3-228ENST00000567804 UHRF1BP1LA0JNW5 1464 aa25.74■■□□□ 1.71
CLN3-228ENST00000567804 KIAA0556O60303 1618 aa25.73■■□□□ 1.71
CLN3-228ENST00000567804 UACAQ9BZF9 1416 aa25.71■■□□□ 1.71
CLN3-228ENST00000567804 ASXL2Q76L83 1435 aa25.68■■□□□ 1.7
CLN3-228ENST00000567804 PLB1Q6P1J6 1458 aa25.67■■□□□ 1.7
CLN3-228ENST00000567804 GLI2P10070 1586 aa25.67■■□□□ 1.7
CLN3-228ENST00000567804 PPRC1Q5VV67 1664 aaKnown RBP25.66■■□□□ 1.7
CLN3-228ENST00000567804 KDM5BQ9UGL1 1544 aa25.63■■□□□ 1.69
CLN3-228ENST00000567804 ZCCHC11Q5TAX3 1644 aaKnown RBP25.63■■□□□ 1.69
CLN3-228ENST00000567804 MAP3K4Q9Y6R4 1608 aa25.56■■□□□ 1.68
CLN3-228ENST00000567804 PRXQ9BXM0 1461 aa25.56■■□□□ 1.68
CLN3-228ENST00000567804 EPRSP07814 1512 aaKnown RBP25.55■■□□□ 1.68
CLN3-228ENST00000567804 GOLGA3Q08378 1498 aa25.53■■□□□ 1.68
CLN3-228ENST00000567804 ABCA8O94911 1581 aa25.48■■□□□ 1.67
CLN3-228ENST00000567804 WDR7Q9Y4E6 1490 aa25.45■■□□□ 1.66
CLN3-228ENST00000567804 TEX14Q8IWB6 1497 aa25.42■■□□□ 1.66
CLN3-228ENST00000567804 KDM4FA0A1W2PPD8 638 aa25.4■■□□□ 1.66
CLN3-228ENST00000567804 COL17A1Q9UMD9 1497 aaPredicted RBP25.39■■□□□ 1.65
CLN3-228ENST00000567804 CFAP43Q8NDM7 1665 aa25.39■■□□□ 1.65
CLN3-228ENST00000567804 SAMD9Q5K651 1589 aa25.32■■□□□ 1.64
CLN3-228ENST00000567804 CSRNP3Q8WYN3 585 aa25.29■■□□□ 1.64
CLN3-228ENST00000567804 MAGI3Q5TCQ9 1506 aa25.28■■□□□ 1.64
CLN3-228ENST00000567804 CD109Q6YHK3 1445 aa25.26■■□□□ 1.63
CLN3-228ENST00000567804 ADGRL1O94910 1474 aa25.25■■□□□ 1.63
CLN3-228ENST00000567804 EEA1Q15075 1411 aa25.23■■□□□ 1.63
CLN3-228ENST00000567804 P3H3Q8IVL6 736 aa25.23■■□□□ 1.63
CLN3-228ENST00000567804 KCNH8Q96L42 1107 aa25.23■■□□□ 1.63
CLN3-228ENST00000567804 RAPGEF6Q8TEU7 1601 aa25.22■■□□□ 1.63
CLN3-228ENST00000567804 ATP10BO94823 1461 aa25.21■■□□□ 1.63
CLN3-228ENST00000567804 FAM9AQ8IZU1 332 aaPredicted RBP25.19■■□□□ 1.62
CLN3-228ENST00000567804 ABCA9Q8IUA7 1624 aa25.16■■□□□ 1.62
CLN3-228ENST00000567804 ARID3CA6NKF2 412 aa25.14■■□□□ 1.62
CLN3-228ENST00000567804 KIF21BO75037 1637 aa25.11■■□□□ 1.61
CLN3-228ENST00000567804 ARAP3Q8WWN8 1544 aa25.09■■□□□ 1.61
CLN3-228ENST00000567804 NUP153P49790 1475 aaKnown RBP25.08■■□□□ 1.6
CLN3-228ENST00000567804 FHOD3Q2V2M9 1422 aa25.06■■□□□ 1.6
CLN3-228ENST00000567804 EFCAB5A4FU69 1503 aa25.04■■□□□ 1.6
CLN3-228ENST00000567804 RANGAP1P46060 587 aaPredicted RBP25.02■■□□□ 1.6
CLN3-228ENST00000567804 PHLDB1Q86UU1 1377 aa25■■□□□ 1.59
CLN3-228ENST00000567804 NEO1Q92859 1461 aa24.98■■□□□ 1.59
CLN3-228ENST00000567804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.98■■□□□ 1.59
CLN3-228ENST00000567804 HNRNPUL2Q1KMD3 747 aaKnown RBP24.98■■□□□ 1.59
CLN3-228ENST00000567804 HECW2Q9P2P5 1572 aa24.94■■□□□ 1.58
CLN3-228ENST00000567804 FRMPD1Q5SYB0 1578 aa24.93■■□□□ 1.58
CLN3-228ENST00000567804 CFAP74Q9C0B2 1584 aa24.88■■□□□ 1.57
CLN3-228ENST00000567804 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.87■■□□□ 1.57
CLN3-228ENST00000567804 PLEKHD1A6NEE1 506 aa24.87■■□□□ 1.57
CLN3-228ENST00000567804 RICTORQ6R327 1708 aa24.86■■□□□ 1.57
CLN3-228ENST00000567804 TTC37Q6PGP7 1564 aa24.86■■□□□ 1.57
CLN3-228ENST00000567804 RAPGEF3O95398 923 aa24.86■■□□□ 1.57
CLN3-228ENST00000567804 ADAMTSL3P82987 1691 aa24.85■■□□□ 1.57
CLN3-228ENST00000567804 CDK13Q14004 1512 aaKnown RBP24.84■■□□□ 1.57
CLN3-228ENST00000567804 BCORL1Q5H9F3 1711 aa24.81■■□□□ 1.56
CLN3-228ENST00000567804 FANCAO15360 1455 aa24.8■■□□□ 1.56
CLN3-228ENST00000567804 ARHGEF40Q8TER5 1519 aa24.8■■□□□ 1.56
CLN3-228ENST00000567804 HECW1Q76N89 1606 aa24.79■■□□□ 1.56
CLN3-228ENST00000567804 CHIC1Q5VXU3 224 aa24.79■■□□□ 1.56
CLN3-228ENST00000567804 AKNAQ7Z591 1439 aa24.78■■□□□ 1.56
CLN3-228ENST00000567804 ARHGAP35Q9NRY4 1499 aa24.78■■□□□ 1.56
CLN3-228ENST00000567804 UBTFP17480 764 aaKnown RBP24.78■■□□□ 1.56
CLN3-228ENST00000567804 DENND4BO75064 1496 aaPredicted RBP24.77■■□□□ 1.56
CLN3-228ENST00000567804 EHMT2Q96KQ7 1210 aa24.76■■□□□ 1.55
CLN3-228ENST00000567804 FMN1Q68DA7 1419 aa24.76■■□□□ 1.55
CLN3-228ENST00000567804 PTPRMP28827 1452 aa24.74■■□□□ 1.55
CLN3-228ENST00000567804 ZMYM4Q5VZL5 1548 aa24.74■■□□□ 1.55
CLN3-228ENST00000567804 MADDQ8WXG6 1647 aa24.74■■□□□ 1.55
CLN3-228ENST00000567804 MYO5CQ9NQX4 1742 aa24.72■■□□□ 1.55
CLN3-228ENST00000567804 LRRIQ1Q96JM4 1722 aa24.72■■□□□ 1.55
CLN3-228ENST00000567804 KIF14Q15058 1648 aa24.67■■□□□ 1.54
CLN3-228ENST00000567804 PLCH2O75038 1416 aa24.67■■□□□ 1.54
CLN3-228ENST00000567804 SIGLEC1Q9BZZ2 1709 aa24.66■■□□□ 1.54
CLN3-228ENST00000567804 ZFYVE16Q7Z3T8 1539 aa24.66■■□□□ 1.54
CLN3-228ENST00000567804 ARID4BQ4LE39 1312 aaPredicted RBP24.66■■□□□ 1.54
CLN3-228ENST00000567804 RIMS1Q86UR5 1692 aaKnown RBP24.66■■□□□ 1.54
CLN3-228ENST00000567804 ILDR1Q86SU0 546 aaPredicted RBP24.64■■□□□ 1.54
CLN3-228ENST00000567804 ATP1B4Q9UN42 357 aaPredicted RBP24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms