RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 KIAA0586Q9BVV6 1533 aa31.8■■■□□ 2.68
CLN3-227ENST00000567495 RUSC2Q8N2Y8 1516 aa31.77■■■□□ 2.68
CLN3-227ENST00000567495 ERCC6L2Q5T890 1561 aa31.77■■■□□ 2.68
CLN3-227ENST00000567495 TRHP20396 242 aaPredicted RBP31.67■■■□□ 2.66
CLN3-227ENST00000567495 RAPGEF2Q9Y4G8 1499 aa31.65■■■□□ 2.66
CLN3-227ENST00000567495 CARMIL2Q6F5E8 1435 aa31.5■■■□□ 2.63
CLN3-227ENST00000567495 IQGAP2Q13576 1575 aa31.48■■■□□ 2.63
CLN3-227ENST00000567495 PRXQ9BXM0 1461 aa31.46■■■□□ 2.63
CLN3-227ENST00000567495 PTPRGP23470 1445 aa31.42■■■□□ 2.62
CLN3-227ENST00000567495 NPM1P06748 294 aaKnown RBP eCLIP31.41■■■□□ 2.62
CLN3-227ENST00000567495 CSRNP3Q8WYN3 585 aa31.41■■■□□ 2.62
CLN3-227ENST00000567495 TNIKQ9UKE5 1360 aa31.41■■■□□ 2.62
CLN3-227ENST00000567495 EEA1Q15075 1411 aa31.4■■■□□ 2.62
CLN3-227ENST00000567495 UGGT2Q9NYU1 1516 aa31.35■■■□□ 2.61
CLN3-227ENST00000567495 DISP1Q96F81 1524 aa31.3■■■□□ 2.6
CLN3-227ENST00000567495 TTBK1Q5TCY1 1321 aaPredicted RBP31.26■■■□□ 2.6
CLN3-227ENST00000567495 CHIC1Q5VXU3 224 aa31.26■■■□□ 2.59
CLN3-227ENST00000567495 ADCY10Q96PN6 1610 aa31.24■■■□□ 2.59
CLN3-227ENST00000567495 GOLGA3Q08378 1498 aa31.21■■■□□ 2.59
CLN3-227ENST00000567495 MAPKBP1O60336 1514 aa31.2■■■□□ 2.59
CLN3-227ENST00000567495 UACAQ9BZF9 1416 aa31.18■■■□□ 2.58
CLN3-227ENST00000567495 CTTNBP2Q8WZ74 1663 aa31.17■■■□□ 2.58
CLN3-227ENST00000567495 UHRF1BP1LA0JNW5 1464 aa31.17■■■□□ 2.58
CLN3-227ENST00000567495 KIAA0556O60303 1618 aa31.16■■■□□ 2.58
CLN3-227ENST00000567495 FAM9AQ8IZU1 332 aaPredicted RBP31.14■■■□□ 2.58
CLN3-227ENST00000567495 ABCC2Q92887 1545 aa31.14■■■□□ 2.57
CLN3-227ENST00000567495 ABCC10Q5T3U5 1492 aa31.12■■■□□ 2.57
CLN3-227ENST00000567495 FAM69CQ0P6D2 419 aa31.1■■■□□ 2.57
CLN3-227ENST00000567495 PLB1Q6P1J6 1458 aa31■■■□□ 2.55
CLN3-227ENST00000567495 KDM5BQ9UGL1 1544 aa30.99■■■□□ 2.55
CLN3-227ENST00000567495 ASXL2Q76L83 1435 aa30.97■■■□□ 2.55
CLN3-227ENST00000567495 DIP2BQ9P265 1576 aa30.96■■■□□ 2.55
CLN3-227ENST00000567495 KIF21BO75037 1637 aa30.95■■■□□ 2.55
CLN3-227ENST00000567495 KIF13AQ9H1H9 1805 aa30.95■■■□□ 2.55
CLN3-227ENST00000567495 P3H3Q8IVL6 736 aa30.91■■■□□ 2.54
CLN3-227ENST00000567495 ABCA8O94911 1581 aa30.88■■■□□ 2.53
CLN3-227ENST00000567495 SAMD9Q5K651 1589 aa30.84■■■□□ 2.53
CLN3-227ENST00000567495 UBTFP17480 764 aaKnown RBP30.83■■■□□ 2.53
CLN3-227ENST00000567495 GLI2P10070 1586 aa30.8■■■□□ 2.52
CLN3-227ENST00000567495 RANGAP1P46060 587 aaPredicted RBP30.8■■■□□ 2.52
CLN3-227ENST00000567495 ZCCHC11Q5TAX3 1644 aaKnown RBP30.8■■■□□ 2.52
CLN3-227ENST00000567495 EPRSP07814 1512 aaKnown RBP30.77■■■□□ 2.52
CLN3-227ENST00000567495 WDR7Q9Y4E6 1490 aa30.76■■■□□ 2.51
CLN3-227ENST00000567495 EFCAB5A4FU69 1503 aa30.73■■■□□ 2.51
CLN3-227ENST00000567495 FHOD3Q2V2M9 1422 aa30.7■■■□□ 2.5
CLN3-227ENST00000567495 EHMT2Q96KQ7 1210 aa30.69■■■□□ 2.5
CLN3-227ENST00000567495 ATP10BO94823 1461 aa30.67■■■□□ 2.5
CLN3-227ENST00000567495 ARID3CA6NKF2 412 aa30.63■■■□□ 2.49
CLN3-227ENST00000567495 KCNH8Q96L42 1107 aa30.63■■■□□ 2.49
CLN3-227ENST00000567495 RAPGEF6Q8TEU7 1601 aa30.62■■■□□ 2.49
CLN3-227ENST00000567495 TEX14Q8IWB6 1497 aa30.59■■■□□ 2.49
CLN3-227ENST00000567495 TSPOAP1O95153 1857 aa30.59■■■□□ 2.49
CLN3-227ENST00000567495 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.57■■■□□ 2.48
CLN3-227ENST00000567495 HNRNPUL2Q1KMD3 747 aaKnown RBP30.57■■■□□ 2.48
CLN3-227ENST00000567495 MAP3K4Q9Y6R4 1608 aa30.57■■■□□ 2.48
CLN3-227ENST00000567495 KDM6BO15054 1643 aa30.56■■■□□ 2.48
CLN3-227ENST00000567495 NUP153P49790 1475 aaKnown RBP30.56■■■□□ 2.48
CLN3-227ENST00000567495 CD109Q6YHK3 1445 aa30.54■■■□□ 2.48
CLN3-227ENST00000567495 FMN1Q68DA7 1419 aa30.52■■■□□ 2.48
CLN3-227ENST00000567495 ARHGAP35Q9NRY4 1499 aa30.5■■■□□ 2.47
CLN3-227ENST00000567495 PPRC1Q5VV67 1664 aaKnown RBP30.49■■■□□ 2.47
CLN3-227ENST00000567495 MAGI3Q5TCQ9 1506 aa30.49■■■□□ 2.47
CLN3-227ENST00000567495 PLEKHD1A6NEE1 506 aa30.48■■■□□ 2.47
CLN3-227ENST00000567495 CFAP43Q8NDM7 1665 aa30.43■■■□□ 2.46
CLN3-227ENST00000567495 COL17A1Q9UMD9 1497 aaPredicted RBP30.37■■■□□ 2.45
CLN3-227ENST00000567495 ATP1B4Q9UN42 357 aaPredicted RBP30.35■■■□□ 2.45
CLN3-227ENST00000567495 PHLDB1Q86UU1 1377 aa30.35■■■□□ 2.45
CLN3-227ENST00000567495 AEBP2Q6ZN18 517 aaPredicted RBP30.34■■■□□ 2.45
CLN3-227ENST00000567495 ABCA9Q8IUA7 1624 aa30.33■■■□□ 2.45
CLN3-227ENST00000567495 CDK11AQ9UQ88 783 aaPredicted RBP30.32■■■□□ 2.44
CLN3-227ENST00000567495 HECW1Q76N89 1606 aa30.29■■■□□ 2.44
CLN3-227ENST00000567495 CLIP1P30622 1438 aa30.27■■■□□ 2.44
CLN3-227ENST00000567495 CDK13Q14004 1512 aaKnown RBP30.26■■■□□ 2.43
CLN3-227ENST00000567495 ARAP3Q8WWN8 1544 aa30.24■■■□□ 2.43
CLN3-227ENST00000567495 NEO1Q92859 1461 aa30.22■■■□□ 2.43
CLN3-227ENST00000567495 CASKIN1Q8WXD9 1431 aa30.21■■■□□ 2.43
CLN3-227ENST00000567495 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.14■■■□□ 2.42
CLN3-227ENST00000567495 CCDC18Q5T9S5 1454 aa30.12■■■□□ 2.41
CLN3-227ENST00000567495 TROQ12816 1431 aaPredicted RBP30.12■■■□□ 2.41
CLN3-227ENST00000567495 FYCO1Q9BQS8 1478 aa30.1■■■□□ 2.41
CLN3-227ENST00000567495 KDM4FA0A1W2PPD8 638 aa30.08■■■□□ 2.41
CLN3-227ENST00000567495 FANCAO15360 1455 aa30.07■■■□□ 2.4
CLN3-227ENST00000567495 PLCH2O75038 1416 aa30.06■■■□□ 2.4
CLN3-227ENST00000567495 RAPGEF3O95398 923 aa30.06■■■□□ 2.4
CLN3-227ENST00000567495 PCF11O94913 1555 aaKnown RBP30.06■■■□□ 2.4
CLN3-227ENST00000567495 AKNAQ7Z591 1439 aa30.05■■■□□ 2.4
CLN3-227ENST00000567495 TTC37Q6PGP7 1564 aa30.05■■■□□ 2.4
CLN3-227ENST00000567495 CEP162Q5TB80 1403 aa30.03■■■□□ 2.4
CLN3-227ENST00000567495 EFCAB2Q5VUJ9 269 aa30.02■■■□□ 2.4
CLN3-227ENST00000567495 CFAP74Q9C0B2 1584 aa30.01■■■□□ 2.39
CLN3-227ENST00000567495 DENND4BO75064 1496 aaPredicted RBP30■■■□□ 2.39
CLN3-227ENST00000567495 KIF14Q15058 1648 aa30■■■□□ 2.39
CLN3-227ENST00000567495 LOC105371045A0A1W2PR82 267 aa29.95■■■□□ 2.39
CLN3-227ENST00000567495 ADGRL1O94910 1474 aa29.94■■■□□ 2.38
CLN3-227ENST00000567495 LRRIQ1Q96JM4 1722 aa29.92■■■□□ 2.38
CLN3-227ENST00000567495 SCAPERQ9BY12 1400 aa29.88■■■□□ 2.37
CLN3-227ENST00000567495 FRMPD1Q5SYB0 1578 aa29.88■■■□□ 2.37
CLN3-227ENST00000567495 MYO5CQ9NQX4 1742 aa29.85■■■□□ 2.37
CLN3-227ENST00000567495 ARHGAP5Q13017 1502 aa29.84■■■□□ 2.37
CLN3-227ENST00000567495 MAGI2Q86UL8 1455 aa29.83■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms