RNA–Protein interactions for RNA: ENST00000567399.5

COMMD4-219, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 976 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-219ENST00000567399 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.61
COMMD4-219ENST00000567399 JPH4Q96JJ6 628 aa25.06■■□□□ 1.6
COMMD4-219ENST00000567399 KIAA0586Q9BVV6 1533 aa25.03■■□□□ 1.6
COMMD4-219ENST00000567399 PRXQ9BXM0 1461 aa25.02■■□□□ 1.6
COMMD4-219ENST00000567399 CYB5RLQ6IPT4 315 aa25.01■■□□□ 1.59
COMMD4-219ENST00000567399 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.59
COMMD4-219ENST00000567399 EHMT2Q96KQ7 1210 aa24.95■■□□□ 1.58
COMMD4-219ENST00000567399 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
COMMD4-219ENST00000567399 IQGAP2Q13576 1575 aa24.91■■□□□ 1.58
COMMD4-219ENST00000567399 ARAP1Q96P48 1450 aa24.89■■□□□ 1.58
COMMD4-219ENST00000567399 ERCC6L2Q5T890 1561 aa24.88■■□□□ 1.57
COMMD4-219ENST00000567399 UBTFP17480 764 aaKnown RBP24.85■■□□□ 1.57
COMMD4-219ENST00000567399 CARMIL2Q6F5E8 1435 aa24.85■■□□□ 1.57
COMMD4-219ENST00000567399 CTTNBP2Q8WZ74 1663 aa24.84■■□□□ 1.57
COMMD4-219ENST00000567399 TTBK1Q5TCY1 1321 aaPredicted RBP24.84■■□□□ 1.57
COMMD4-219ENST00000567399 KIF21BO75037 1637 aa24.83■■□□□ 1.57
COMMD4-219ENST00000567399 RANGAP1P46060 587 aaPredicted RBP24.79■■□□□ 1.56
COMMD4-219ENST00000567399 GOLGA3Q08378 1498 aa24.77■■□□□ 1.56
COMMD4-219ENST00000567399 UGGT2Q9NYU1 1516 aa24.75■■□□□ 1.55
COMMD4-219ENST00000567399 PTPRGP23470 1445 aa24.71■■□□□ 1.55
COMMD4-219ENST00000567399 TNIKQ9UKE5 1360 aa24.71■■□□□ 1.55
COMMD4-219ENST00000567399 DISP1Q96F81 1524 aa24.69■■□□□ 1.54
COMMD4-219ENST00000567399 P3H3Q8IVL6 736 aa24.68■■□□□ 1.54
COMMD4-219ENST00000567399 KIAA0556O60303 1618 aa24.64■■□□□ 1.54
COMMD4-219ENST00000567399 NPM1P06748 294 aaKnown RBP eCLIP24.63■■□□□ 1.53
COMMD4-219ENST00000567399 TRHP20396 242 aaPredicted RBP24.52■■□□□ 1.52
COMMD4-219ENST00000567399 UACAQ9BZF9 1416 aa24.52■■□□□ 1.52
COMMD4-219ENST00000567399 SAMD9Q5K651 1589 aa24.5■■□□□ 1.51
COMMD4-219ENST00000567399 EFCAB5A4FU69 1503 aa24.48■■□□□ 1.51
COMMD4-219ENST00000567399 ADCY10Q96PN6 1610 aa24.47■■□□□ 1.51
COMMD4-219ENST00000567399 FHOD3Q2V2M9 1422 aa24.46■■□□□ 1.51
COMMD4-219ENST00000567399 LOC105371045A0A1W2PR82 267 aa24.46■■□□□ 1.51
COMMD4-219ENST00000567399 PLB1Q6P1J6 1458 aa24.43■■□□□ 1.5
COMMD4-219ENST00000567399 ABCC2Q92887 1545 aa24.42■■□□□ 1.5
COMMD4-219ENST00000567399 UHRF1BP1LA0JNW5 1464 aa24.42■■□□□ 1.5
COMMD4-219ENST00000567399 ARHGAP35Q9NRY4 1499 aa24.38■■□□□ 1.49
COMMD4-219ENST00000567399 ARID3CA6NKF2 412 aa24.36■■□□□ 1.49
COMMD4-219ENST00000567399 ATP1B4Q9UN42 357 aaPredicted RBP24.36■■□□□ 1.49
COMMD4-219ENST00000567399 ABCA8O94911 1581 aa24.36■■□□□ 1.49
COMMD4-219ENST00000567399 CLIP1P30622 1438 aa24.35■■□□□ 1.49
COMMD4-219ENST00000567399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.34■■□□□ 1.49
COMMD4-219ENST00000567399 HNRNPUL2Q1KMD3 747 aaKnown RBP24.34■■□□□ 1.49
COMMD4-219ENST00000567399 FMN1Q68DA7 1419 aa24.31■■□□□ 1.48
COMMD4-219ENST00000567399 RAPGEF6Q8TEU7 1601 aa24.3■■□□□ 1.48
COMMD4-219ENST00000567399 KDM5BQ9UGL1 1544 aa24.3■■□□□ 1.48
COMMD4-219ENST00000567399 MAPKBP1O60336 1514 aa24.29■■□□□ 1.48
COMMD4-219ENST00000567399 ZCCHC11Q5TAX3 1644 aaKnown RBP24.27■■□□□ 1.48
COMMD4-219ENST00000567399 FAM69CQ0P6D2 419 aa24.26■■□□□ 1.47
COMMD4-219ENST00000567399 CEP162Q5TB80 1403 aa24.26■■□□□ 1.47
COMMD4-219ENST00000567399 ASXL2Q76L83 1435 aa24.26■■□□□ 1.47
COMMD4-219ENST00000567399 ATP10BO94823 1461 aa24.2■■□□□ 1.47
COMMD4-219ENST00000567399 ABCC10Q5T3U5 1492 aa24.19■■□□□ 1.46
COMMD4-219ENST00000567399 KCNH8Q96L42 1107 aa24.19■■□□□ 1.46
COMMD4-219ENST00000567399 NUP153P49790 1475 aaKnown RBP24.19■■□□□ 1.46
COMMD4-219ENST00000567399 PLEKHD1A6NEE1 506 aa24.15■■□□□ 1.46
COMMD4-219ENST00000567399 WDR7Q9Y4E6 1490 aa24.14■■□□□ 1.46
COMMD4-219ENST00000567399 HECW1Q76N89 1606 aa24.13■■□□□ 1.45
COMMD4-219ENST00000567399 DIP2BQ9P265 1576 aa24.12■■□□□ 1.45
COMMD4-219ENST00000567399 CDK11AQ9UQ88 783 aaPredicted RBP24.1■■□□□ 1.45
COMMD4-219ENST00000567399 CASKIN1Q8WXD9 1431 aa24.1■■□□□ 1.45
COMMD4-219ENST00000567399 KIF13AQ9H1H9 1805 aa24.09■■□□□ 1.45
COMMD4-219ENST00000567399 EPRSP07814 1512 aaKnown RBP24.09■■□□□ 1.45
COMMD4-219ENST00000567399 CDK13Q14004 1512 aaKnown RBP24.06■■□□□ 1.44
COMMD4-219ENST00000567399 PCF11O94913 1555 aaKnown RBP24.06■■□□□ 1.44
COMMD4-219ENST00000567399 FYCO1Q9BQS8 1478 aa24.04■■□□□ 1.44
COMMD4-219ENST00000567399 GLI2P10070 1586 aa24.03■■□□□ 1.44
COMMD4-219ENST00000567399 CCDC18Q5T9S5 1454 aa24■■□□□ 1.43
COMMD4-219ENST00000567399 TSPOAP1O95153 1857 aa23.98■■□□□ 1.43
COMMD4-219ENST00000567399 CD109Q6YHK3 1445 aa23.96■■□□□ 1.43
COMMD4-219ENST00000567399 VPS8Q8N3P4 1428 aa23.94■■□□□ 1.42
COMMD4-219ENST00000567399 LRRIQ1Q96JM4 1722 aa23.92■■□□□ 1.42
COMMD4-219ENST00000567399 MAP3K4Q9Y6R4 1608 aa23.92■■□□□ 1.42
COMMD4-219ENST00000567399 CFAP43Q8NDM7 1665 aa23.89■■□□□ 1.42
COMMD4-219ENST00000567399 TEX14Q8IWB6 1497 aa23.89■■□□□ 1.42
COMMD4-219ENST00000567399 APLP2Q06481 763 aa23.89■■□□□ 1.41
COMMD4-219ENST00000567399 TROQ12816 1431 aaPredicted RBP23.89■■□□□ 1.41
COMMD4-219ENST00000567399 ABCA9Q8IUA7 1624 aa23.86■■□□□ 1.41
COMMD4-219ENST00000567399 MTUS2Q5JR59 1369 aa23.85■■□□□ 1.41
COMMD4-219ENST00000567399 KIF14Q15058 1648 aa23.83■■□□□ 1.41
COMMD4-219ENST00000567399 MAGI3Q5TCQ9 1506 aa23.83■■□□□ 1.41
COMMD4-219ENST00000567399 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.82■■□□□ 1.4
COMMD4-219ENST00000567399 PPRC1Q5VV67 1664 aaKnown RBP23.8■■□□□ 1.4
COMMD4-219ENST00000567399 KDM6BO15054 1643 aa23.77■■□□□ 1.4
COMMD4-219ENST00000567399 TTC37Q6PGP7 1564 aa23.77■■□□□ 1.4
COMMD4-219ENST00000567399 TIAM1Q13009 1591 aa23.73■■□□□ 1.39
COMMD4-219ENST00000567399 EFCAB2Q5VUJ9 269 aa23.72■■□□□ 1.39
COMMD4-219ENST00000567399 PLCH2O75038 1416 aa23.72■■□□□ 1.39
COMMD4-219ENST00000567399 EHBP1L1Q8N3D4 1523 aa23.71■■□□□ 1.39
COMMD4-219ENST00000567399 PHLDB1Q86UU1 1377 aa23.71■■□□□ 1.39
COMMD4-219ENST00000567399 FANCAO15360 1455 aa23.7■■□□□ 1.38
COMMD4-219ENST00000567399 NEO1Q92859 1461 aa23.69■■□□□ 1.38
COMMD4-219ENST00000567399 MYO5CQ9NQX4 1742 aa23.68■■□□□ 1.38
COMMD4-219ENST00000567399 CCNB3Q8WWL7 1395 aa23.67■■□□□ 1.38
COMMD4-219ENST00000567399 ARHGAP5Q13017 1502 aa23.67■■□□□ 1.38
COMMD4-219ENST00000567399 MAP3K1Q13233 1512 aa23.67■■□□□ 1.38
COMMD4-219ENST00000567399 CFAP74Q9C0B2 1584 aa23.66■■□□□ 1.38
COMMD4-219ENST00000567399 AKNAQ7Z591 1439 aa23.66■■□□□ 1.38
COMMD4-219ENST00000567399 LRRC9Q6ZRR7 1453 aa23.65■■□□□ 1.38
COMMD4-219ENST00000567399 KANK4Q5T7N3 995 aaPredicted RBP23.65■■□□□ 1.38
COMMD4-219ENST00000567399 ZNF777Q9ULD5 760 aaPredicted RBP23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms