RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 CEP170Q5SW79 1584 aa17.52■□□□□ 0.39
GTF3C1-206ENST00000566779 FHAD1B1AJZ9 1412 aa17.5■□□□□ 0.39
GTF3C1-206ENST00000566779 PPP4R3CPQ6ZMV5 832 aa17.46■□□□□ 0.39
GTF3C1-206ENST00000566779 CUL7Q14999 1698 aa17.43■□□□□ 0.38
GTF3C1-206ENST00000566779 ERCC6L2Q5T890 1561 aa17.43■□□□□ 0.38
GTF3C1-206ENST00000566779 NUP160Q12769 1436 aa17.42■□□□□ 0.38
GTF3C1-206ENST00000566779 KIF27Q86VH2 1401 aa17.42■□□□□ 0.38
GTF3C1-206ENST00000566779 RUSC2Q8N2Y8 1516 aa17.39■□□□□ 0.37
GTF3C1-206ENST00000566779 EHMT2Q96KQ7 1210 aa17.39■□□□□ 0.37
GTF3C1-206ENST00000566779 SHROOM2Q13796 1616 aa17.39■□□□□ 0.37
GTF3C1-206ENST00000566779 TRHP20396 242 aaPredicted RBP17.34■□□□□ 0.37
GTF3C1-206ENST00000566779 IGF1RP08069 1367 aa17.3■□□□□ 0.36
GTF3C1-206ENST00000566779 PRG4Q92954 1404 aaPredicted RBP17.3■□□□□ 0.36
GTF3C1-206ENST00000566779 CARMIL1Q5VZK9 1371 aa17.25■□□□□ 0.35
GTF3C1-206ENST00000566779 JPH4Q96JJ6 628 aa17.22■□□□□ 0.35
GTF3C1-206ENST00000566779 KIAA0586Q9BVV6 1533 aa17.21■□□□□ 0.34
GTF3C1-206ENST00000566779 IQGAP2Q13576 1575 aa17.19■□□□□ 0.34
GTF3C1-206ENST00000566779 TTBK1Q5TCY1 1321 aaPredicted RBP17.19■□□□□ 0.34
GTF3C1-206ENST00000566779 CTTNBP2Q8WZ74 1663 aa17.18■□□□□ 0.34
GTF3C1-206ENST00000566779 NCBP3Q53F19 620 aaKnown RBP17.18■□□□□ 0.34
GTF3C1-206ENST00000566779 RAPGEF2Q9Y4G8 1499 aa17.15■□□□□ 0.34
GTF3C1-206ENST00000566779 ADCY10Q96PN6 1610 aa17.12■□□□□ 0.33
GTF3C1-206ENST00000566779 KIF13AQ9H1H9 1805 aa17.1■□□□□ 0.33
GTF3C1-206ENST00000566779 SLC4A1APQ9BWU0 796 aaKnown RBP17.1■□□□□ 0.33
GTF3C1-206ENST00000566779 CARMIL2Q6F5E8 1435 aa17.07■□□□□ 0.32
GTF3C1-206ENST00000566779 KIAA0556O60303 1618 aa17.03■□□□□ 0.32
GTF3C1-206ENST00000566779 NPM1P06748 294 aaKnown RBP eCLIP17.03■□□□□ 0.32
GTF3C1-206ENST00000566779 PTPRGP23470 1445 aa17.03■□□□□ 0.32
GTF3C1-206ENST00000566779 DISP1Q96F81 1524 aa17.01■□□□□ 0.31
GTF3C1-206ENST00000566779 TSPOAP1O95153 1857 aa17.01■□□□□ 0.31
GTF3C1-206ENST00000566779 TNIKQ9UKE5 1360 aa17.01■□□□□ 0.31
GTF3C1-206ENST00000566779 FAM9AQ8IZU1 332 aaPredicted RBP17■□□□□ 0.31
GTF3C1-206ENST00000566779 UGGT2Q9NYU1 1516 aa17■□□□□ 0.31
GTF3C1-206ENST00000566779 PRXQ9BXM0 1461 aa16.98■□□□□ 0.31
GTF3C1-206ENST00000566779 MAPKBP1O60336 1514 aa16.97■□□□□ 0.31
GTF3C1-206ENST00000566779 DIP2BQ9P265 1576 aa16.97■□□□□ 0.31
GTF3C1-206ENST00000566779 NPM3O75607 178 aaKnown RBP16.96■□□□□ 0.31
GTF3C1-206ENST00000566779 ABCC2Q92887 1545 aa16.92■□□□□ 0.3
GTF3C1-206ENST00000566779 GOLGA3Q08378 1498 aa16.92■□□□□ 0.3
GTF3C1-206ENST00000566779 ZCCHC11Q5TAX3 1644 aaKnown RBP16.92■□□□□ 0.3
GTF3C1-206ENST00000566779 UACAQ9BZF9 1416 aa16.91■□□□□ 0.3
GTF3C1-206ENST00000566779 FAM69CQ0P6D2 419 aa16.91■□□□□ 0.3
GTF3C1-206ENST00000566779 CSRNP3Q8WYN3 585 aa16.91■□□□□ 0.3
GTF3C1-206ENST00000566779 ABCC10Q5T3U5 1492 aa16.91■□□□□ 0.3
GTF3C1-206ENST00000566779 EEA1Q15075 1411 aa16.9■□□□□ 0.3
GTF3C1-206ENST00000566779 RANGAP1P46060 587 aaPredicted RBP16.9■□□□□ 0.3
GTF3C1-206ENST00000566779 P3H3Q8IVL6 736 aa16.86■□□□□ 0.29
GTF3C1-206ENST00000566779 UHRF1BP1LA0JNW5 1464 aa16.86■□□□□ 0.29
GTF3C1-206ENST00000566779 ASXL2Q76L83 1435 aa16.85■□□□□ 0.29
GTF3C1-206ENST00000566779 PLB1Q6P1J6 1458 aa16.85■□□□□ 0.29
GTF3C1-206ENST00000566779 KIF21BO75037 1637 aa16.85■□□□□ 0.29
GTF3C1-206ENST00000566779 MSH5O43196 834 aa16.83■□□□□ 0.28
GTF3C1-206ENST00000566779 SCAF1Q9H7N4 1312 aaKnown RBP16.82■□□□□ 0.28
GTF3C1-206ENST00000566779 CNKSR2Q8WXI2 1034 aa16.82■□□□□ 0.28
GTF3C1-206ENST00000566779 SAMD9Q5K651 1589 aa16.81■□□□□ 0.28
GTF3C1-206ENST00000566779 ABCA8O94911 1581 aa16.81■□□□□ 0.28
GTF3C1-206ENST00000566779 ARID3CA6NKF2 412 aa16.8■□□□□ 0.28
GTF3C1-206ENST00000566779 KDM6BO15054 1643 aa16.8■□□□□ 0.28
GTF3C1-206ENST00000566779 KDM5BQ9UGL1 1544 aa16.8■□□□□ 0.28
GTF3C1-206ENST00000566779 PPRC1Q5VV67 1664 aaKnown RBP16.77■□□□□ 0.28
GTF3C1-206ENST00000566779 RAPGEF6Q8TEU7 1601 aa16.75■□□□□ 0.27
GTF3C1-206ENST00000566779 GLI2P10070 1586 aa16.74■□□□□ 0.27
GTF3C1-206ENST00000566779 MAP3K4Q9Y6R4 1608 aa16.74■□□□□ 0.27
GTF3C1-206ENST00000566779 WDR7Q9Y4E6 1490 aa16.73■□□□□ 0.27
GTF3C1-206ENST00000566779 FHOD3Q2V2M9 1422 aa16.73■□□□□ 0.27
GTF3C1-206ENST00000566779 EPRSP07814 1512 aaKnown RBP16.73■□□□□ 0.27
GTF3C1-206ENST00000566779 UBTFP17480 764 aaKnown RBP16.71■□□□□ 0.27
GTF3C1-206ENST00000566779 KCNH8Q96L42 1107 aa16.69■□□□□ 0.26
GTF3C1-206ENST00000566779 EFCAB5A4FU69 1503 aa16.69■□□□□ 0.26
GTF3C1-206ENST00000566779 CFAP43Q8NDM7 1665 aa16.68■□□□□ 0.26
GTF3C1-206ENST00000566779 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.67■□□□□ 0.26
GTF3C1-206ENST00000566779 HNRNPUL2Q1KMD3 747 aaKnown RBP16.67■□□□□ 0.26
GTF3C1-206ENST00000566779 TEX14Q8IWB6 1497 aa16.64■□□□□ 0.25
GTF3C1-206ENST00000566779 ATP10BO94823 1461 aa16.62■□□□□ 0.25
GTF3C1-206ENST00000566779 NUP153P49790 1475 aaKnown RBP16.61■□□□□ 0.25
GTF3C1-206ENST00000566779 CD109Q6YHK3 1445 aa16.58■□□□□ 0.24
GTF3C1-206ENST00000566779 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
GTF3C1-206ENST00000566779 HECW1Q76N89 1606 aa16.56■□□□□ 0.24
GTF3C1-206ENST00000566779 ABCA9Q8IUA7 1624 aa16.56■□□□□ 0.24
GTF3C1-206ENST00000566779 CDK13Q14004 1512 aaKnown RBP16.55■□□□□ 0.24
GTF3C1-206ENST00000566779 ARHGAP35Q9NRY4 1499 aa16.54■□□□□ 0.24
GTF3C1-206ENST00000566779 MAGI3Q5TCQ9 1506 aa16.52■□□□□ 0.24
GTF3C1-206ENST00000566779 MAPK8IP2Q13387 824 aaPredicted RBP16.52■□□□□ 0.24
GTF3C1-206ENST00000566779 COL17A1Q9UMD9 1497 aaPredicted RBP16.52■□□□□ 0.23
GTF3C1-206ENST00000566779 LRRIQ1Q96JM4 1722 aa16.51■□□□□ 0.23
GTF3C1-206ENST00000566779 FMN1Q68DA7 1419 aa16.49■□□□□ 0.23
GTF3C1-206ENST00000566779 TTC37Q6PGP7 1564 aa16.49■□□□□ 0.23
GTF3C1-206ENST00000566779 PCF11O94913 1555 aaKnown RBP16.48■□□□□ 0.23
GTF3C1-206ENST00000566779 PLEKHD1A6NEE1 506 aa16.46■□□□□ 0.23
GTF3C1-206ENST00000566779 ZBTB22O15209 634 aa16.45■□□□□ 0.22
GTF3C1-206ENST00000566779 MYO5CQ9NQX4 1742 aa16.43■□□□□ 0.22
GTF3C1-206ENST00000566779 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.43■□□□□ 0.22
GTF3C1-206ENST00000566779 CFAP74Q9C0B2 1584 aa16.43■□□□□ 0.22
GTF3C1-206ENST00000566779 ADGRL1O94910 1474 aa16.42■□□□□ 0.22
GTF3C1-206ENST00000566779 KIF14Q15058 1648 aa16.41■□□□□ 0.22
GTF3C1-206ENST00000566779 CLIP1P30622 1438 aa16.41■□□□□ 0.22
GTF3C1-206ENST00000566779 NEO1Q92859 1461 aa16.38■□□□□ 0.21
GTF3C1-206ENST00000566779 ARAP3Q8WWN8 1544 aa16.38■□□□□ 0.21
GTF3C1-206ENST00000566779 FRMPD1Q5SYB0 1578 aa16.38■□□□□ 0.21
GTF3C1-206ENST00000566779 FANCAO15360 1455 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms