RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 HNRNPUL2Q1KMD3 747 aaKnown RBP9.34□□□□□ -0.91
CLN3-223ENST00000566472 CTTNBP2Q8WZ74 1663 aa9.34□□□□□ -0.91
CLN3-223ENST00000566472 KANK4Q5T7N3 995 aaPredicted RBP9.33□□□□□ -0.92
CLN3-223ENST00000566472 LRRC9Q6ZRR7 1453 aa9.33□□□□□ -0.92
CLN3-223ENST00000566472 PCF11O94913 1555 aaKnown RBP9.33□□□□□ -0.92
CLN3-223ENST00000566472 CASKIN1Q8WXD9 1431 aa9.32□□□□□ -0.92
CLN3-223ENST00000566472 GAPVD1Q14C86 1478 aa9.32□□□□□ -0.92
CLN3-223ENST00000566472 FMN1Q68DA7 1419 aa9.31□□□□□ -0.92
CLN3-223ENST00000566472 SAMD9Q5K651 1589 aa9.3□□□□□ -0.92
CLN3-223ENST00000566472 THOC2Q8NI27 1593 aaKnown RBP9.3□□□□□ -0.92
CLN3-223ENST00000566472 TARBP1Q13395 1621 aaKnown RBP9.3□□□□□ -0.92
CLN3-223ENST00000566472 MRC2Q9UBG0 1479 aa9.29□□□□□ -0.92
CLN3-223ENST00000566472 DHX57Q6P158 1386 aaKnown RBP9.29□□□□□ -0.92
CLN3-223ENST00000566472 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLN3-223ENST00000566472 KIF21AQ7Z4S6 1674 aa9.29□□□□□ -0.92
CLN3-223ENST00000566472 ZNF316A6NFI3 1004 aaPredicted RBP9.28□□□□□ -0.92
CLN3-223ENST00000566472 FHOD3Q2V2M9 1422 aa9.27□□□□□ -0.93
CLN3-223ENST00000566472 SNAPC4Q5SXM2 1469 aa9.26□□□□□ -0.93
CLN3-223ENST00000566472 DIEXFQ68CQ4 756 aaKnown RBP9.25□□□□□ -0.93
CLN3-223ENST00000566472 TDRD9Q8NDG6 1382 aaKnown RBP9.24□□□□□ -0.93
CLN3-223ENST00000566472 ADAMTS12P58397 1594 aa9.24□□□□□ -0.93
CLN3-223ENST00000566472 PHLDB1Q86UU1 1377 aa9.24□□□□□ -0.93
CLN3-223ENST00000566472 IFT140Q96RY7 1462 aa9.23□□□□□ -0.93
CLN3-223ENST00000566472 WDR62O43379 1518 aa9.23□□□□□ -0.93
CLN3-223ENST00000566472 PBRM1Q86U86 1689 aa9.23□□□□□ -0.93
CLN3-223ENST00000566472 GRIN2BQ13224 1484 aa9.22□□□□□ -0.93
CLN3-223ENST00000566472 SETD5Q9C0A6 1442 aa9.21□□□□□ -0.94
CLN3-223ENST00000566472 CCDC18Q5T9S5 1454 aa9.21□□□□□ -0.94
CLN3-223ENST00000566472 EHBP1L1Q8N3D4 1523 aa9.21□□□□□ -0.94
CLN3-223ENST00000566472 RAB3GAP2Q9H2M9 1393 aa9.19□□□□□ -0.94
CLN3-223ENST00000566472 IQGAP2Q13576 1575 aa9.19□□□□□ -0.94
CLN3-223ENST00000566472 FGD6Q6ZV73 1430 aa9.18□□□□□ -0.94
CLN3-223ENST00000566472 HECW1Q76N89 1606 aa9.18□□□□□ -0.94
CLN3-223ENST00000566472 UGGT2Q9NYU1 1516 aa9.18□□□□□ -0.94
CLN3-223ENST00000566472 DNAJC5BQ9UF47 199 aa9.18□□□□□ -0.94
CLN3-223ENST00000566472 P3H3Q8IVL6 736 aa9.17□□□□□ -0.94
CLN3-223ENST00000566472 ARHGEF11O15085 1522 aa9.16□□□□□ -0.94
CLN3-223ENST00000566472 MAPKBP1O60336 1514 aa9.16□□□□□ -0.94
CLN3-223ENST00000566472 MTUS2Q5JR59 1369 aa9.16□□□□□ -0.94
CLN3-223ENST00000566472 SUPT6HQ7KZ85 1726 aaKnown RBP9.15□□□□□ -0.94
CLN3-223ENST00000566472 CENPBP07199 599 aaPredicted RBP9.15□□□□□ -0.94
CLN3-223ENST00000566472 NCOA2Q15596 1464 aa9.15□□□□□ -0.95
CLN3-223ENST00000566472 MYOM3Q5VTT5 1437 aa9.14□□□□□ -0.95
CLN3-223ENST00000566472 TIMELESSQ9UNS1 1208 aa9.14□□□□□ -0.95
CLN3-223ENST00000566472 KIAA0586Q9BVV6 1533 aa9.14□□□□□ -0.95
CLN3-223ENST00000566472 TCOF1Q13428 1488 aaKnown RBP9.13□□□□□ -0.95
CLN3-223ENST00000566472 FAM50AQ14320 339 aaKnown RBP9.12□□□□□ -0.95
CLN3-223ENST00000566472 ATP1B4Q9UN42 357 aaPredicted RBP9.12□□□□□ -0.95
CLN3-223ENST00000566472 MAGI1Q96QZ7 1491 aaPredicted RBP9.12□□□□□ -0.95
CLN3-223ENST00000566472 HFM1A2PYH4 1435 aa9.12□□□□□ -0.95
CLN3-223ENST00000566472 AKNAQ7Z591 1439 aa9.12□□□□□ -0.95
CLN3-223ENST00000566472 LRRIQ1Q96JM4 1722 aa9.11□□□□□ -0.95
CLN3-223ENST00000566472 ACIN1Q9UKV3 1341 aaKnown RBP9.11□□□□□ -0.95
CLN3-223ENST00000566472 EIF4G3O43432 1585 aaKnown RBP9.11□□□□□ -0.95
CLN3-223ENST00000566472 EPRSP07814 1512 aaKnown RBP9.1□□□□□ -0.95
CLN3-223ENST00000566472 ZNF608Q9ULD9 1512 aaPredicted RBP9.1□□□□□ -0.95
CLN3-223ENST00000566472 GRIN2AQ12879 1464 aa9.1□□□□□ -0.95
CLN3-223ENST00000566472 KIAA0556O60303 1618 aa9.1□□□□□ -0.95
CLN3-223ENST00000566472 ITGAEP38570 1179 aa9.1□□□□□ -0.95
CLN3-223ENST00000566472 MIA2Q96PC5 1412 aa9.1□□□□□ -0.95
CLN3-223ENST00000566472 PTPN23Q9H3S7 1636 aa9.09□□□□□ -0.95
CLN3-223ENST00000566472 MAGI3Q5TCQ9 1506 aa9.08□□□□□ -0.96
CLN3-223ENST00000566472 ERCC6Q03468 1493 aa9.08□□□□□ -0.96
CLN3-223ENST00000566472 UACAQ9BZF9 1416 aa9.07□□□□□ -0.96
CLN3-223ENST00000566472 DISP1Q96F81 1524 aa9.07□□□□□ -0.96
CLN3-223ENST00000566472 SYNJ2O15056 1496 aa9.07□□□□□ -0.96
CLN3-223ENST00000566472 SCAF1Q9H7N4 1312 aaKnown RBP9.06□□□□□ -0.96
CLN3-223ENST00000566472 NUP160Q12769 1436 aa9.05□□□□□ -0.96
CLN3-223ENST00000566472 NAIPQ13075 1403 aa9.05□□□□□ -0.96
CLN3-223ENST00000566472 PTPRKQ15262 1439 aa9.05□□□□□ -0.96
CLN3-223ENST00000566472 GCC2Q8IWJ2 1684 aa9.04□□□□□ -0.96
CLN3-223ENST00000566472 NEUROD1Q13562 356 aa9.04□□□□□ -0.96
CLN3-223ENST00000566472 RAPGEF6Q8TEU7 1601 aa9.04□□□□□ -0.96
CLN3-223ENST00000566472 MIER1Q8N108 512 aa9.03□□□□□ -0.96
CLN3-223ENST00000566472 CDK13Q14004 1512 aaKnown RBP9.03□□□□□ -0.96
CLN3-223ENST00000566472 NUP153P49790 1475 aaKnown RBP9.02□□□□□ -0.96
CLN3-223ENST00000566472 CEP170Q5SW79 1584 aa9.02□□□□□ -0.97
CLN3-223ENST00000566472 CARMIL2Q6F5E8 1435 aa9.01□□□□□ -0.97
CLN3-223ENST00000566472 ROCK1Q13464 1354 aa9□□□□□ -0.97
CLN3-223ENST00000566472 CDK11AQ9UQ88 783 aaPredicted RBP9□□□□□ -0.97
CLN3-223ENST00000566472 TROQ12816 1431 aaPredicted RBP8.99□□□□□ -0.97
CLN3-223ENST00000566472 ADCY10Q96PN6 1610 aa8.99□□□□□ -0.97
CLN3-223ENST00000566472 DNMT1P26358 1616 aaKnown RBP8.98□□□□□ -0.97
CLN3-223ENST00000566472 PPP1R15AO75807 674 aaPredicted RBP8.97□□□□□ -0.97
CLN3-223ENST00000566472 CHMP7Q8WUX9 453 aaPredicted RBP8.97□□□□□ -0.97
CLN3-223ENST00000566472 ITSN2Q9NZM3 1697 aa8.97□□□□□ -0.97
CLN3-223ENST00000566472 TONSLQ96HA7 1378 aa8.97□□□□□ -0.97
CLN3-223ENST00000566472 DAPK1P53355 1430 aa8.97□□□□□ -0.97
CLN3-223ENST00000566472 SIN3AQ96ST3 1273 aa8.96□□□□□ -0.98
CLN3-223ENST00000566472 ABCA8O94911 1581 aa8.95□□□□□ -0.98
CLN3-223ENST00000566472 ABCC5O15440 1437 aa8.95□□□□□ -0.98
CLN3-223ENST00000566472 ADGRL2O95490 1459 aa8.94□□□□□ -0.98
CLN3-223ENST00000566472 PELP1Q8IZL8 1130 aaKnown RBP8.93□□□□□ -0.98
CLN3-223ENST00000566472 GTF3C3Q9Y5Q9 886 aa8.93□□□□□ -0.98
CLN3-223ENST00000566472 KDM5BQ9UGL1 1544 aa8.92□□□□□ -0.98
CLN3-223ENST00000566472 CAMSAP2Q08AD1 1489 aa8.92□□□□□ -0.98
CLN3-223ENST00000566472 PLB1Q6P1J6 1458 aa8.92□□□□□ -0.98
CLN3-223ENST00000566472 JPH4Q96JJ6 628 aa8.92□□□□□ -0.98
CLN3-223ENST00000566472 GPATCH8Q9UKJ3 1502 aaKnown RBP8.91□□□□□ -0.98
CLN3-223ENST00000566472 DENND4BO75064 1496 aaPredicted RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms