RNA–Protein interactions for RNA: ENST00000566466.1

SMPD3-207, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-207ENST00000566466 PLPPR3Q6T4P5 718 aa15.32■□□□□ 0.04
SMPD3-207ENST00000566466 GOLGA3Q08378 1498 aa15.31■□□□□ 0.04
SMPD3-207ENST00000566466 KIAA0586Q9BVV6 1533 aa15.31■□□□□ 0.04
SMPD3-207ENST00000566466 SHROOM2Q13796 1616 aa15.3■□□□□ 0.04
SMPD3-207ENST00000566466 OSCARQ8IYS5 282 aa15.29■□□□□ 0.04
SMPD3-207ENST00000566466 CTTNBP2Q8WZ74 1663 aa15.26■□□□□ 0.03
SMPD3-207ENST00000566466 IQGAP2Q13576 1575 aa15.25■□□□□ 0.03
SMPD3-207ENST00000566466 ERCC6L2Q5T890 1561 aa15.25■□□□□ 0.03
SMPD3-207ENST00000566466 UGGT2Q9NYU1 1516 aa15.22■□□□□ 0.03
SMPD3-207ENST00000566466 DISP1Q96F81 1524 aa15.21■□□□□ 0.03
SMPD3-207ENST00000566466 EHMT2Q96KQ7 1210 aa15.2■□□□□ 0.02
SMPD3-207ENST00000566466 LOC105371045A0A1W2PR82 267 aa15.19■□□□□ 0.02
SMPD3-207ENST00000566466 TNIKQ9UKE5 1360 aa15.18■□□□□ 0.02
SMPD3-207ENST00000566466 ARHGEF11O15085 1522 aa15.17■□□□□ 0.02
SMPD3-207ENST00000566466 SAMD9Q5K651 1589 aa15.17■□□□□ 0.02
SMPD3-207ENST00000566466 JPH4Q96JJ6 628 aa15.16■□□□□ 0.02
SMPD3-207ENST00000566466 PRG4Q92954 1404 aaPredicted RBP15.16■□□□□ 0.02
SMPD3-207ENST00000566466 KIAA0556O60303 1618 aa15.15■□□□□ 0.02
SMPD3-207ENST00000566466 DNAJC5Q9H3Z4 198 aa15.14■□□□□ 0.01
SMPD3-207ENST00000566466 RIMBP3CA6NJZ7 1639 aa15.14■□□□□ 0.01
SMPD3-207ENST00000566466 RIMBP3BA6NNM3 1639 aa15.14■□□□□ 0.01
SMPD3-207ENST00000566466 RIMBP3Q9UFD9 1639 aa15.14■□□□□ 0.01
SMPD3-207ENST00000566466 ARAP1Q96P48 1450 aa15.12■□□□□ 0.01
SMPD3-207ENST00000566466 ARHGAP35Q9NRY4 1499 aa15.12■□□□□ 0.01
SMPD3-207ENST00000566466 UBTFP17480 764 aaKnown RBP15.11■□□□□ 0.01
SMPD3-207ENST00000566466 EFCAB5A4FU69 1503 aa15.07■□□□□ 0
SMPD3-207ENST00000566466 CEP162Q5TB80 1403 aa15.07■□□□□ 0
SMPD3-207ENST00000566466 FHOD3Q2V2M9 1422 aa15.05■□□□□ -0
SMPD3-207ENST00000566466 CLIP1P30622 1438 aa15.04■□□□□ -0
SMPD3-207ENST00000566466 CARMIL2Q6F5E8 1435 aa15.02■□□□□ -0
SMPD3-207ENST00000566466 RANGAP1P46060 587 aaPredicted RBP14.99□□□□□ -0.01
SMPD3-207ENST00000566466 ABCA8O94911 1581 aa14.98□□□□□ -0.01
SMPD3-207ENST00000566466 P3H3Q8IVL6 736 aa14.98□□□□□ -0.01
SMPD3-207ENST00000566466 PLB1Q6P1J6 1458 aa14.97□□□□□ -0.01
SMPD3-207ENST00000566466 PTPRGP23470 1445 aa14.97□□□□□ -0.01
SMPD3-207ENST00000566466 ADCY10Q96PN6 1610 aa14.95□□□□□ -0.02
SMPD3-207ENST00000566466 UHRF1BP1LA0JNW5 1464 aa14.93□□□□□ -0.02
SMPD3-207ENST00000566466 ABCC2Q92887 1545 aa14.92□□□□□ -0.02
SMPD3-207ENST00000566466 PCF11O94913 1555 aaKnown RBP14.92□□□□□ -0.02
SMPD3-207ENST00000566466 UACAQ9BZF9 1416 aa14.92□□□□□ -0.02
SMPD3-207ENST00000566466 NUP153P49790 1475 aaKnown RBP14.91□□□□□ -0.02
SMPD3-207ENST00000566466 RAPGEF6Q8TEU7 1601 aa14.9□□□□□ -0.02
SMPD3-207ENST00000566466 CYB5RLQ6IPT4 315 aa14.89□□□□□ -0.03
SMPD3-207ENST00000566466 FMN1Q68DA7 1419 aa14.89□□□□□ -0.03
SMPD3-207ENST00000566466 LRRIQ1Q96JM4 1722 aa14.87□□□□□ -0.03
SMPD3-207ENST00000566466 TTBK1Q5TCY1 1321 aaPredicted RBP14.87□□□□□ -0.03
SMPD3-207ENST00000566466 KDM5BQ9UGL1 1544 aa14.87□□□□□ -0.03
SMPD3-207ENST00000566466 VPS8Q8N3P4 1428 aa14.86□□□□□ -0.03
SMPD3-207ENST00000566466 CASKIN1Q8WXD9 1431 aa14.86□□□□□ -0.03
SMPD3-207ENST00000566466 ATP10BO94823 1461 aa14.83□□□□□ -0.03
SMPD3-207ENST00000566466 FYCO1Q9BQS8 1478 aa14.83□□□□□ -0.03
SMPD3-207ENST00000566466 HECW1Q76N89 1606 aa14.82□□□□□ -0.04
SMPD3-207ENST00000566466 EPRSP07814 1512 aaKnown RBP14.82□□□□□ -0.04
SMPD3-207ENST00000566466 CDK13Q14004 1512 aaKnown RBP14.82□□□□□ -0.04
SMPD3-207ENST00000566466 ZCCHC11Q5TAX3 1644 aaKnown RBP14.81□□□□□ -0.04
SMPD3-207ENST00000566466 MAGI3Q5TCQ9 1506 aa14.79□□□□□ -0.04
SMPD3-207ENST00000566466 MAPKBP1O60336 1514 aa14.78□□□□□ -0.04
SMPD3-207ENST00000566466 FOXD1Q16676 465 aa14.78□□□□□ -0.04
SMPD3-207ENST00000566466 CFAP43Q8NDM7 1665 aa14.74□□□□□ -0.05
SMPD3-207ENST00000566466 ARID3CA6NKF2 412 aa14.74□□□□□ -0.05
SMPD3-207ENST00000566466 CCDC18Q5T9S5 1454 aa14.73□□□□□ -0.05
SMPD3-207ENST00000566466 ASXL2Q76L83 1435 aa14.73□□□□□ -0.05
SMPD3-207ENST00000566466 TIAM1Q13009 1591 aa14.72□□□□□ -0.05
SMPD3-207ENST00000566466 MAP3K1Q13233 1512 aa14.71□□□□□ -0.06
SMPD3-207ENST00000566466 WDR7Q9Y4E6 1490 aa14.7□□□□□ -0.06
SMPD3-207ENST00000566466 DIP2BQ9P265 1576 aa14.68□□□□□ -0.06
SMPD3-207ENST00000566466 ABCC10Q5T3U5 1492 aa14.66□□□□□ -0.06
SMPD3-207ENST00000566466 KIF14Q15058 1648 aa14.66□□□□□ -0.06
SMPD3-207ENST00000566466 TROQ12816 1431 aaPredicted RBP14.66□□□□□ -0.06
SMPD3-207ENST00000566466 KANK4Q5T7N3 995 aaPredicted RBP14.65□□□□□ -0.06
SMPD3-207ENST00000566466 LRRC9Q6ZRR7 1453 aa14.64□□□□□ -0.07
SMPD3-207ENST00000566466 EHBP1L1Q8N3D4 1523 aa14.63□□□□□ -0.07
SMPD3-207ENST00000566466 ATP1B4Q9UN42 357 aaPredicted RBP14.63□□□□□ -0.07
SMPD3-207ENST00000566466 GLI2P10070 1586 aa14.63□□□□□ -0.07
SMPD3-207ENST00000566466 KIF13AQ9H1H9 1805 aa14.62□□□□□ -0.07
SMPD3-207ENST00000566466 TTC37Q6PGP7 1564 aa14.62□□□□□ -0.07
SMPD3-207ENST00000566466 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.61□□□□□ -0.07
SMPD3-207ENST00000566466 ABCA9Q8IUA7 1624 aa14.6□□□□□ -0.07
SMPD3-207ENST00000566466 NPM1P06748 294 aaKnown RBP eCLIP14.6□□□□□ -0.07
SMPD3-207ENST00000566466 MAP3K4Q9Y6R4 1608 aa14.59□□□□□ -0.07
SMPD3-207ENST00000566466 PPRC1Q5VV67 1664 aaKnown RBP14.58□□□□□ -0.08
SMPD3-207ENST00000566466 PLEKHD1A6NEE1 506 aa14.56□□□□□ -0.08
SMPD3-207ENST00000566466 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.56□□□□□ -0.08
SMPD3-207ENST00000566466 HNRNPUL2Q1KMD3 747 aaKnown RBP14.56□□□□□ -0.08
SMPD3-207ENST00000566466 NCOA2Q15596 1464 aa14.56□□□□□ -0.08
SMPD3-207ENST00000566466 MTUS2Q5JR59 1369 aa14.55□□□□□ -0.08
SMPD3-207ENST00000566466 GPATCH8Q9UKJ3 1502 aaKnown RBP14.52□□□□□ -0.08
SMPD3-207ENST00000566466 PHLDB1Q86UU1 1377 aa14.52□□□□□ -0.08
SMPD3-207ENST00000566466 CDK11AQ9UQ88 783 aaPredicted RBP14.52□□□□□ -0.09
SMPD3-207ENST00000566466 SUPT6HQ7KZ85 1726 aaKnown RBP14.52□□□□□ -0.09
SMPD3-207ENST00000566466 ADRA2BP18089 450 aa14.51□□□□□ -0.09
SMPD3-207ENST00000566466 FAM69CQ0P6D2 419 aa14.51□□□□□ -0.09
SMPD3-207ENST00000566466 KCNH8Q96L42 1107 aa14.51□□□□□ -0.09
SMPD3-207ENST00000566466 CDC42BPAQ5VT25 1732 aa14.5□□□□□ -0.09
SMPD3-207ENST00000566466 PREX2Q70Z35 1606 aa14.5□□□□□ -0.09
SMPD3-207ENST00000566466 PLCH2O75038 1416 aa14.49□□□□□ -0.09
SMPD3-207ENST00000566466 ARAP3Q8WWN8 1544 aa14.49□□□□□ -0.09
SMPD3-207ENST00000566466 CD109Q6YHK3 1445 aa14.49□□□□□ -0.09
SMPD3-207ENST00000566466 PPP6R1Q9UPN7 881 aa14.48□□□□□ -0.09
SMPD3-207ENST00000566466 CDC42BPBQ9Y5S2 1711 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms