RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CUL7Q14999 1698 aa25.81■■□□□ 1.72
CLN3-222ENST00000566083 RUSC2Q8N2Y8 1516 aa25.79■■□□□ 1.72
CLN3-222ENST00000566083 KIAA0586Q9BVV6 1533 aa25.78■■□□□ 1.72
CLN3-222ENST00000566083 CARMIL1Q5VZK9 1371 aa25.72■■□□□ 1.71
CLN3-222ENST00000566083 NPM1P06748 294 aaKnown RBP eCLIP25.69■■□□□ 1.7
CLN3-222ENST00000566083 CARMIL2Q6F5E8 1435 aa25.57■■□□□ 1.68
CLN3-222ENST00000566083 PTPRGP23470 1445 aa25.53■■□□□ 1.68
CLN3-222ENST00000566083 MAPKBP1O60336 1514 aa25.52■■□□□ 1.68
CLN3-222ENST00000566083 RAPGEF2Q9Y4G8 1499 aa25.5■■□□□ 1.67
CLN3-222ENST00000566083 IQGAP2Q13576 1575 aa25.5■■□□□ 1.67
CLN3-222ENST00000566083 TNIKQ9UKE5 1360 aa25.5■■□□□ 1.67
CLN3-222ENST00000566083 ABCC10Q5T3U5 1492 aa25.49■■□□□ 1.67
CLN3-222ENST00000566083 ADCY10Q96PN6 1610 aa25.48■■□□□ 1.67
CLN3-222ENST00000566083 FAM69CQ0P6D2 419 aa25.48■■□□□ 1.67
CLN3-222ENST00000566083 KIF13AQ9H1H9 1805 aa25.47■■□□□ 1.67
CLN3-222ENST00000566083 AEBP2Q6ZN18 517 aaPredicted RBP25.37■■□□□ 1.65
CLN3-222ENST00000566083 DIP2BQ9P265 1576 aa25.37■■□□□ 1.65
CLN3-222ENST00000566083 TTBK1Q5TCY1 1321 aaPredicted RBP25.36■■□□□ 1.65
CLN3-222ENST00000566083 ABCC2Q92887 1545 aa25.35■■□□□ 1.65
CLN3-222ENST00000566083 UGGT2Q9NYU1 1516 aa25.35■■□□□ 1.65
CLN3-222ENST00000566083 UHRF1BP1LA0JNW5 1464 aa25.34■■□□□ 1.65
CLN3-222ENST00000566083 DISP1Q96F81 1524 aa25.34■■□□□ 1.65
CLN3-222ENST00000566083 UACAQ9BZF9 1416 aa25.32■■□□□ 1.64
CLN3-222ENST00000566083 PLB1Q6P1J6 1458 aa25.28■■□□□ 1.64
CLN3-222ENST00000566083 GOLGA3Q08378 1498 aa25.24■■□□□ 1.63
CLN3-222ENST00000566083 PRXQ9BXM0 1461 aa25.24■■□□□ 1.63
CLN3-222ENST00000566083 ASXL2Q76L83 1435 aa25.23■■□□□ 1.63
CLN3-222ENST00000566083 KIAA0556O60303 1618 aa25.23■■□□□ 1.63
CLN3-222ENST00000566083 KDM5BQ9UGL1 1544 aa25.2■■□□□ 1.62
CLN3-222ENST00000566083 CTTNBP2Q8WZ74 1663 aa25.2■■□□□ 1.62
CLN3-222ENST00000566083 FAM9AQ8IZU1 332 aaPredicted RBP25.19■■□□□ 1.62
CLN3-222ENST00000566083 GLI2P10070 1586 aa25.17■■□□□ 1.62
CLN3-222ENST00000566083 KDM6BO15054 1643 aa25.14■■□□□ 1.61
CLN3-222ENST00000566083 TSPOAP1O95153 1857 aa25.13■■□□□ 1.61
CLN3-222ENST00000566083 CSRNP3Q8WYN3 585 aa25.12■■□□□ 1.61
CLN3-222ENST00000566083 EEA1Q15075 1411 aa25.08■■□□□ 1.61
CLN3-222ENST00000566083 EPRSP07814 1512 aaKnown RBP25.07■■□□□ 1.6
CLN3-222ENST00000566083 ZCCHC11Q5TAX3 1644 aaKnown RBP25.06■■□□□ 1.6
CLN3-222ENST00000566083 TEX14Q8IWB6 1497 aa25.02■■□□□ 1.6
CLN3-222ENST00000566083 WDR7Q9Y4E6 1490 aa25.02■■□□□ 1.6
CLN3-222ENST00000566083 ABCA8O94911 1581 aa25■■□□□ 1.59
CLN3-222ENST00000566083 MAP3K4Q9Y6R4 1608 aa24.98■■□□□ 1.59
CLN3-222ENST00000566083 PPRC1Q5VV67 1664 aaKnown RBP24.97■■□□□ 1.59
CLN3-222ENST00000566083 P3H3Q8IVL6 736 aa24.89■■□□□ 1.58
CLN3-222ENST00000566083 KCNH8Q96L42 1107 aa24.89■■□□□ 1.58
CLN3-222ENST00000566083 CD109Q6YHK3 1445 aa24.88■■□□□ 1.57
CLN3-222ENST00000566083 SAMD9Q5K651 1589 aa24.87■■□□□ 1.57
CLN3-222ENST00000566083 MAGI3Q5TCQ9 1506 aa24.86■■□□□ 1.57
CLN3-222ENST00000566083 CFAP43Q8NDM7 1665 aa24.85■■□□□ 1.57
CLN3-222ENST00000566083 KDM4FA0A1W2PPD8 638 aa24.84■■□□□ 1.57
CLN3-222ENST00000566083 COL17A1Q9UMD9 1497 aaPredicted RBP24.83■■□□□ 1.56
CLN3-222ENST00000566083 ATP10BO94823 1461 aa24.82■■□□□ 1.56
CLN3-222ENST00000566083 KIF21BO75037 1637 aa24.76■■□□□ 1.55
CLN3-222ENST00000566083 RAPGEF6Q8TEU7 1601 aa24.76■■□□□ 1.55
CLN3-222ENST00000566083 ARID3CA6NKF2 412 aa24.75■■□□□ 1.55
CLN3-222ENST00000566083 PHLDB1Q86UU1 1377 aa24.74■■□□□ 1.55
CLN3-222ENST00000566083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.74■■□□□ 1.55
CLN3-222ENST00000566083 HNRNPUL2Q1KMD3 747 aaKnown RBP24.74■■□□□ 1.55
CLN3-222ENST00000566083 RANGAP1P46060 587 aaPredicted RBP24.72■■□□□ 1.55
CLN3-222ENST00000566083 EFCAB5A4FU69 1503 aa24.72■■□□□ 1.55
CLN3-222ENST00000566083 FHOD3Q2V2M9 1422 aa24.69■■□□□ 1.54
CLN3-222ENST00000566083 CHIC1Q5VXU3 224 aa24.68■■□□□ 1.54
CLN3-222ENST00000566083 NUP153P49790 1475 aaKnown RBP24.67■■□□□ 1.54
CLN3-222ENST00000566083 ADGRL1O94910 1474 aa24.66■■□□□ 1.54
CLN3-222ENST00000566083 ARAP3Q8WWN8 1544 aa24.66■■□□□ 1.54
CLN3-222ENST00000566083 ABCA9Q8IUA7 1624 aa24.66■■□□□ 1.54
CLN3-222ENST00000566083 PLEKHD1A6NEE1 506 aa24.66■■□□□ 1.54
CLN3-222ENST00000566083 UBTFP17480 764 aaKnown RBP24.64■■□□□ 1.54
CLN3-222ENST00000566083 NEO1Q92859 1461 aa24.6■■□□□ 1.53
CLN3-222ENST00000566083 FMN1Q68DA7 1419 aa24.55■■□□□ 1.52
CLN3-222ENST00000566083 CDK11AQ9UQ88 783 aaPredicted RBP24.48■■□□□ 1.51
CLN3-222ENST00000566083 RAPGEF3O95398 923 aa24.46■■□□□ 1.51
CLN3-222ENST00000566083 EHMT2Q96KQ7 1210 aa24.46■■□□□ 1.51
CLN3-222ENST00000566083 ARHGAP35Q9NRY4 1499 aa24.43■■□□□ 1.5
CLN3-222ENST00000566083 CFAP74Q9C0B2 1584 aa24.42■■□□□ 1.5
CLN3-222ENST00000566083 ATP1B4Q9UN42 357 aaPredicted RBP24.42■■□□□ 1.5
CLN3-222ENST00000566083 FANCAO15360 1455 aa24.42■■□□□ 1.5
CLN3-222ENST00000566083 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.42■■□□□ 1.5
CLN3-222ENST00000566083 HECW1Q76N89 1606 aa24.41■■□□□ 1.5
CLN3-222ENST00000566083 DENND4BO75064 1496 aaPredicted RBP24.41■■□□□ 1.5
CLN3-222ENST00000566083 AKNAQ7Z591 1439 aa24.41■■□□□ 1.5
CLN3-222ENST00000566083 CDK13Q14004 1512 aaKnown RBP24.39■■□□□ 1.49
CLN3-222ENST00000566083 PLCH2O75038 1416 aa24.34■■□□□ 1.49
CLN3-222ENST00000566083 TTC37Q6PGP7 1564 aa24.34■■□□□ 1.49
CLN3-222ENST00000566083 FRMPD1Q5SYB0 1578 aa24.33■■□□□ 1.49
CLN3-222ENST00000566083 ARID4BQ4LE39 1312 aaPredicted RBP24.32■■□□□ 1.48
CLN3-222ENST00000566083 CLIP1P30622 1438 aa24.3■■□□□ 1.48
CLN3-222ENST00000566083 EFCAB2Q5VUJ9 269 aa24.3■■□□□ 1.48
CLN3-222ENST00000566083 MAGI2Q86UL8 1455 aa24.29■■□□□ 1.48
CLN3-222ENST00000566083 RICTORQ6R327 1708 aa24.28■■□□□ 1.48
CLN3-222ENST00000566083 TROQ12816 1431 aaPredicted RBP24.27■■□□□ 1.48
CLN3-222ENST00000566083 ARHGEF40Q8TER5 1519 aa24.27■■□□□ 1.48
CLN3-222ENST00000566083 HECW2Q9P2P5 1572 aa24.26■■□□□ 1.47
CLN3-222ENST00000566083 ZMYM4Q5VZL5 1548 aa24.26■■□□□ 1.47
CLN3-222ENST00000566083 ADAMTSL3P82987 1691 aa24.25■■□□□ 1.47
CLN3-222ENST00000566083 SCAPERQ9BY12 1400 aa24.25■■□□□ 1.47
CLN3-222ENST00000566083 POGZQ7Z3K3 1410 aa24.24■■□□□ 1.47
CLN3-222ENST00000566083 KIF14Q15058 1648 aa24.23■■□□□ 1.47
CLN3-222ENST00000566083 CASKIN1Q8WXD9 1431 aa24.23■■□□□ 1.47
CLN3-222ENST00000566083 PTPRMP28827 1452 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms