RNA–Protein interactions for RNA: ENST00000564587.5

COMMD4-210, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-210ENST00000564587 RANGAP1P46060 587 aaPredicted RBP24.25■■□□□ 1.47
COMMD4-210ENST00000564587 ARAP1Q96P48 1450 aa24.25■■□□□ 1.47
COMMD4-210ENST00000564587 EFCAB5A4FU69 1503 aa24.24■■□□□ 1.47
COMMD4-210ENST00000564587 SNAPC4Q5SXM2 1469 aa24.21■■□□□ 1.47
COMMD4-210ENST00000564587 APLP2Q06481 763 aa24.19■■□□□ 1.46
COMMD4-210ENST00000564587 PCGF6Q9BYE7 350 aa24.16■■□□□ 1.46
COMMD4-210ENST00000564587 SYNJ2O15056 1496 aa24.15■■□□□ 1.46
COMMD4-210ENST00000564587 GRIN2AQ12879 1464 aa24.13■■□□□ 1.45
COMMD4-210ENST00000564587 IQGAP2Q13576 1575 aa24.09■■□□□ 1.45
COMMD4-210ENST00000564587 CHMP7Q8WUX9 453 aaPredicted RBP24.08■■□□□ 1.45
COMMD4-210ENST00000564587 SAMD9Q5K651 1589 aa24.08■■□□□ 1.44
COMMD4-210ENST00000564587 KIAA0586Q9BVV6 1533 aa24.07■■□□□ 1.44
COMMD4-210ENST00000564587 FMN1Q68DA7 1419 aa24.03■■□□□ 1.44
COMMD4-210ENST00000564587 MAP3K1Q13233 1512 aa24.01■■□□□ 1.43
COMMD4-210ENST00000564587 UGGT2Q9NYU1 1516 aa24■■□□□ 1.43
COMMD4-210ENST00000564587 PPARGC1BQ86YN6 1023 aaKnown RBP23.99■■□□□ 1.43
COMMD4-210ENST00000564587 FHOD3Q2V2M9 1422 aa23.98■■□□□ 1.43
COMMD4-210ENST00000564587 NUP160Q12769 1436 aa23.97■■□□□ 1.43
COMMD4-210ENST00000564587 FYCO1Q9BQS8 1478 aa23.94■■□□□ 1.42
COMMD4-210ENST00000564587 CASKIN1Q8WXD9 1431 aa23.94■■□□□ 1.42
COMMD4-210ENST00000564587 P3H3Q8IVL6 736 aa23.94■■□□□ 1.42
COMMD4-210ENST00000564587 OSCARQ8IYS5 282 aa23.94■■□□□ 1.42
COMMD4-210ENST00000564587 FBLN2P98095 1184 aa23.92■■□□□ 1.42
COMMD4-210ENST00000564587 CEP170Q5SW79 1584 aa23.91■■□□□ 1.42
COMMD4-210ENST00000564587 PCF11O94913 1555 aaKnown RBP23.88■■□□□ 1.41
COMMD4-210ENST00000564587 TIAM1Q13009 1591 aa23.86■■□□□ 1.41
COMMD4-210ENST00000564587 KIAA0556O60303 1618 aa23.83■■□□□ 1.41
COMMD4-210ENST00000564587 CFAP43Q8NDM7 1665 aa23.83■■□□□ 1.4
COMMD4-210ENST00000564587 CARMIL2Q6F5E8 1435 aa23.81■■□□□ 1.4
COMMD4-210ENST00000564587 DISP1Q96F81 1524 aa23.8■■□□□ 1.4
COMMD4-210ENST00000564587 TTBK1Q5TCY1 1321 aaPredicted RBP23.8■■□□□ 1.4
COMMD4-210ENST00000564587 CHD1O14646 1710 aa23.79■■□□□ 1.4
COMMD4-210ENST00000564587 JPH4Q96JJ6 628 aa23.78■■□□□ 1.4
COMMD4-210ENST00000564587 KANK4Q5T7N3 995 aaPredicted RBP23.77■■□□□ 1.4
COMMD4-210ENST00000564587 LRRC9Q6ZRR7 1453 aa23.76■■□□□ 1.39
COMMD4-210ENST00000564587 ATP1B4Q9UN42 357 aaPredicted RBP23.75■■□□□ 1.39
COMMD4-210ENST00000564587 CCDC18Q5T9S5 1454 aa23.74■■□□□ 1.39
COMMD4-210ENST00000564587 HECW1Q76N89 1606 aa23.73■■□□□ 1.39
COMMD4-210ENST00000564587 RRBP1Q9P2E9 1410 aaKnown RBP23.64■■□□□ 1.37
COMMD4-210ENST00000564587 SHROOM2Q13796 1616 aa23.62■■□□□ 1.37
COMMD4-210ENST00000564587 RAPGEF6Q8TEU7 1601 aa23.62■■□□□ 1.37
COMMD4-210ENST00000564587 MTUS2Q5JR59 1369 aa23.61■■□□□ 1.37
COMMD4-210ENST00000564587 EPRSP07814 1512 aaKnown RBP23.6■■□□□ 1.37
COMMD4-210ENST00000564587 LRRIQ1Q96JM4 1722 aa23.6■■□□□ 1.37
COMMD4-210ENST00000564587 TRHP20396 242 aaPredicted RBP23.6■■□□□ 1.37
COMMD4-210ENST00000564587 PRG4Q92954 1404 aaPredicted RBP23.59■■□□□ 1.37
COMMD4-210ENST00000564587 EHBP1L1Q8N3D4 1523 aa23.59■■□□□ 1.37
COMMD4-210ENST00000564587 CLASP1Q7Z460 1538 aa23.56■■□□□ 1.36
COMMD4-210ENST00000564587 HRCP23327 699 aa23.56■■□□□ 1.36
COMMD4-210ENST00000564587 AEBP2Q6ZN18 517 aaPredicted RBP23.56■■□□□ 1.36
COMMD4-210ENST00000564587 CCNB3Q8WWL7 1395 aa23.55■■□□□ 1.36
COMMD4-210ENST00000564587 RIMBP3CA6NJZ7 1639 aa23.54■■□□□ 1.36
COMMD4-210ENST00000564587 RIMBP3BA6NNM3 1639 aa23.54■■□□□ 1.36
COMMD4-210ENST00000564587 RIMBP3Q9UFD9 1639 aa23.54■■□□□ 1.36
COMMD4-210ENST00000564587 CDK11AQ9UQ88 783 aaPredicted RBP23.53■■□□□ 1.36
COMMD4-210ENST00000564587 SUPT6HQ7KZ85 1726 aaKnown RBP23.52■■□□□ 1.36
COMMD4-210ENST00000564587 NUP153P49790 1475 aaKnown RBP23.51■■□□□ 1.35
COMMD4-210ENST00000564587 CYB5RLQ6IPT4 315 aa23.51■■□□□ 1.35
COMMD4-210ENST00000564587 PTPRGP23470 1445 aa23.5■■□□□ 1.35
COMMD4-210ENST00000564587 ABCA8O94911 1581 aa23.48■■□□□ 1.35
COMMD4-210ENST00000564587 PHLDB1Q86UU1 1377 aa23.48■■□□□ 1.35
COMMD4-210ENST00000564587 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.48■■□□□ 1.35
COMMD4-210ENST00000564587 ZEB1P37275 1124 aaPredicted RBP23.47■■□□□ 1.35
COMMD4-210ENST00000564587 PLB1Q6P1J6 1458 aa23.46■■□□□ 1.35
COMMD4-210ENST00000564587 CDK13Q14004 1512 aaKnown RBP23.45■■□□□ 1.34
COMMD4-210ENST00000564587 NCOA2Q15596 1464 aa23.44■■□□□ 1.34
COMMD4-210ENST00000564587 ARHGEF11O15085 1522 aa23.43■■□□□ 1.34
COMMD4-210ENST00000564587 HNRNPUL2Q1KMD3 747 aaKnown RBP23.42■■□□□ 1.34
COMMD4-210ENST00000564587 MAGI3Q5TCQ9 1506 aa23.41■■□□□ 1.34
COMMD4-210ENST00000564587 MYOM3Q5VTT5 1437 aa23.4■■□□□ 1.34
COMMD4-210ENST00000564587 FGD6Q6ZV73 1430 aa23.38■■□□□ 1.33
COMMD4-210ENST00000564587 UACAQ9BZF9 1416 aa23.37■■□□□ 1.33
COMMD4-210ENST00000564587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.37■■□□□ 1.33
COMMD4-210ENST00000564587 TROQ12816 1431 aaPredicted RBP23.36■■□□□ 1.33
COMMD4-210ENST00000564587 MIA2Q96PC5 1412 aa23.33■■□□□ 1.32
COMMD4-210ENST00000564587 ATP10BO94823 1461 aa23.32■■□□□ 1.32
COMMD4-210ENST00000564587 PLEKHD1A6NEE1 506 aa23.31■■□□□ 1.32
COMMD4-210ENST00000564587 FAM50AQ14320 339 aaKnown RBP23.31■■□□□ 1.32
COMMD4-210ENST00000564587 ARID3CA6NKF2 412 aa23.3■■□□□ 1.32
COMMD4-210ENST00000564587 ERCC6L2Q5T890 1561 aa23.3■■□□□ 1.32
COMMD4-210ENST00000564587 ADCY10Q96PN6 1610 aa23.3■■□□□ 1.32
COMMD4-210ENST00000564587 ABCC2Q92887 1545 aa23.29■■□□□ 1.32
COMMD4-210ENST00000564587 CCER1Q8TC90 406 aaPredicted RBP23.29■■□□□ 1.32
COMMD4-210ENST00000564587 UHRF1BP1LA0JNW5 1464 aa23.29■■□□□ 1.32
COMMD4-210ENST00000564587 TCOF1Q13428 1488 aaKnown RBP23.25■■□□□ 1.31
COMMD4-210ENST00000564587 PTPN23Q9H3S7 1636 aa23.25■■□□□ 1.31
COMMD4-210ENST00000564587 ITSN2Q9NZM3 1697 aa23.2■■□□□ 1.3
COMMD4-210ENST00000564587 KIF14Q15058 1648 aa23.2■■□□□ 1.3
COMMD4-210ENST00000564587 ITGAEP38570 1179 aa23.19■■□□□ 1.3
COMMD4-210ENST00000564587 KDM5BQ9UGL1 1544 aa23.15■■□□□ 1.3
COMMD4-210ENST00000564587 SETD5Q9C0A6 1442 aa23.15■■□□□ 1.3
COMMD4-210ENST00000564587 CLSPNQ9HAW4 1339 aa23.12■■□□□ 1.29
COMMD4-210ENST00000564587 GPATCH8Q9UKJ3 1502 aaKnown RBP23.12■■□□□ 1.29
COMMD4-210ENST00000564587 ABCC10Q5T3U5 1492 aa23.11■■□□□ 1.29
COMMD4-210ENST00000564587 CFDP1Q9UEE9 299 aaPredicted RBP23.09■■□□□ 1.29
COMMD4-210ENST00000564587 ZCCHC11Q5TAX3 1644 aaKnown RBP23.08■■□□□ 1.29
COMMD4-210ENST00000564587 RAB3GAP2Q9H2M9 1393 aa23.06■■□□□ 1.28
COMMD4-210ENST00000564587 AKNAQ7Z591 1439 aa23.06■■□□□ 1.28
COMMD4-210ENST00000564587 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
COMMD4-210ENST00000564587 HFM1A2PYH4 1435 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms