RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 RUSC2Q8N2Y8 1516 aa22.63■■□□□ 1.21
CLK3-216ENST00000564468 JPH4Q96JJ6 628 aa22.61■■□□□ 1.21
CLK3-216ENST00000564468 KIAA0586Q9BVV6 1533 aa22.6■■□□□ 1.21
CLK3-216ENST00000564468 RAPGEF2Q9Y4G8 1499 aa22.56■■□□□ 1.2
CLK3-216ENST00000564468 ERCC6L2Q5T890 1561 aa22.55■■□□□ 1.2
CLK3-216ENST00000564468 PRG4Q92954 1404 aaPredicted RBP22.55■■□□□ 1.2
CLK3-216ENST00000564468 IQGAP2Q13576 1575 aa22.46■■□□□ 1.19
CLK3-216ENST00000564468 EEA1Q15075 1411 aa22.45■■□□□ 1.18
CLK3-216ENST00000564468 PRXQ9BXM0 1461 aa22.41■■□□□ 1.18
CLK3-216ENST00000564468 CTTNBP2Q8WZ74 1663 aa22.41■■□□□ 1.18
CLK3-216ENST00000564468 CSRNP3Q8WYN3 585 aa22.4■■□□□ 1.18
CLK3-216ENST00000564468 CARMIL2Q6F5E8 1435 aa22.4■■□□□ 1.18
CLK3-216ENST00000564468 CHIC1Q5VXU3 224 aa22.39■■□□□ 1.17
CLK3-216ENST00000564468 UGGT2Q9NYU1 1516 aa22.32■■□□□ 1.16
CLK3-216ENST00000564468 NPM1P06748 294 aaKnown RBP eCLIP22.32■■□□□ 1.16
CLK3-216ENST00000564468 TNIKQ9UKE5 1360 aa22.3■■□□□ 1.16
CLK3-216ENST00000564468 PTPRGP23470 1445 aa22.29■■□□□ 1.16
CLK3-216ENST00000564468 DISP1Q96F81 1524 aa22.26■■□□□ 1.15
CLK3-216ENST00000564468 FAM9AQ8IZU1 332 aaPredicted RBP22.25■■□□□ 1.15
CLK3-216ENST00000564468 GOLGA3Q08378 1498 aa22.24■■□□□ 1.15
CLK3-216ENST00000564468 FAM69CQ0P6D2 419 aa22.24■■□□□ 1.15
CLK3-216ENST00000564468 KIAA0556O60303 1618 aa22.24■■□□□ 1.15
CLK3-216ENST00000564468 ADCY10Q96PN6 1610 aa22.23■■□□□ 1.15
CLK3-216ENST00000564468 TTBK1Q5TCY1 1321 aaPredicted RBP22.2■■□□□ 1.14
CLK3-216ENST00000564468 KIF21BO75037 1637 aa22.2■■□□□ 1.14
CLK3-216ENST00000564468 ABCC10Q5T3U5 1492 aa22.15■■□□□ 1.14
CLK3-216ENST00000564468 KIF13AQ9H1H9 1805 aa22.15■■□□□ 1.14
CLK3-216ENST00000564468 UACAQ9BZF9 1416 aa22.14■■□□□ 1.13
CLK3-216ENST00000564468 MAPKBP1O60336 1514 aa22.13■■□□□ 1.13
CLK3-216ENST00000564468 UHRF1BP1LA0JNW5 1464 aa22.13■■□□□ 1.13
CLK3-216ENST00000564468 ABCC2Q92887 1545 aa22.1■■□□□ 1.13
CLK3-216ENST00000564468 SAMD9Q5K651 1589 aa22.05■■□□□ 1.12
CLK3-216ENST00000564468 UBTFP17480 764 aaKnown RBP22.02■■□□□ 1.12
CLK3-216ENST00000564468 KDM5BQ9UGL1 1544 aa22.01■■□□□ 1.11
CLK3-216ENST00000564468 P3H3Q8IVL6 736 aa22■■□□□ 1.11
CLK3-216ENST00000564468 DIP2BQ9P265 1576 aa21.99■■□□□ 1.11
CLK3-216ENST00000564468 PLB1Q6P1J6 1458 aa21.99■■□□□ 1.11
CLK3-216ENST00000564468 ABCA8O94911 1581 aa21.99■■□□□ 1.11
CLK3-216ENST00000564468 ZCCHC11Q5TAX3 1644 aaKnown RBP21.98■■□□□ 1.11
CLK3-216ENST00000564468 KDM4FA0A1W2PPD8 638 aa21.97■■□□□ 1.11
CLK3-216ENST00000564468 EFCAB5A4FU69 1503 aa21.96■■□□□ 1.11
CLK3-216ENST00000564468 RANGAP1P46060 587 aaPredicted RBP21.96■■□□□ 1.11
CLK3-216ENST00000564468 ASXL2Q76L83 1435 aa21.96■■□□□ 1.11
CLK3-216ENST00000564468 KDM6BO15054 1643 aa21.95■■□□□ 1.1
CLK3-216ENST00000564468 EHMT2Q96KQ7 1210 aa21.94■■□□□ 1.1
CLK3-216ENST00000564468 TSPOAP1O95153 1857 aa21.89■■□□□ 1.09
CLK3-216ENST00000564468 RAPGEF6Q8TEU7 1601 aa21.88■■□□□ 1.09
CLK3-216ENST00000564468 GLI2P10070 1586 aa21.88■■□□□ 1.09
CLK3-216ENST00000564468 FHOD3Q2V2M9 1422 aa21.88■■□□□ 1.09
CLK3-216ENST00000564468 WDR7Q9Y4E6 1490 aa21.84■■□□□ 1.09
CLK3-216ENST00000564468 EPRSP07814 1512 aaKnown RBP21.83■■□□□ 1.09
CLK3-216ENST00000564468 ATP10BO94823 1461 aa21.8■■□□□ 1.08
CLK3-216ENST00000564468 ARHGAP35Q9NRY4 1499 aa21.77■■□□□ 1.08
CLK3-216ENST00000564468 MAP3K4Q9Y6R4 1608 aa21.77■■□□□ 1.08
CLK3-216ENST00000564468 FMN1Q68DA7 1419 aa21.77■■□□□ 1.08
CLK3-216ENST00000564468 ARID3CA6NKF2 412 aa21.75■■□□□ 1.07
CLK3-216ENST00000564468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.75■■□□□ 1.07
CLK3-216ENST00000564468 HNRNPUL2Q1KMD3 747 aaKnown RBP21.75■■□□□ 1.07
CLK3-216ENST00000564468 ILDR1Q86SU0 546 aaPredicted RBP21.75■■□□□ 1.07
CLK3-216ENST00000564468 NUP153P49790 1475 aaKnown RBP21.75■■□□□ 1.07
CLK3-216ENST00000564468 KCNH8Q96L42 1107 aa21.74■■□□□ 1.07
CLK3-216ENST00000564468 CFAP43Q8NDM7 1665 aa21.74■■□□□ 1.07
CLK3-216ENST00000564468 PPRC1Q5VV67 1664 aaKnown RBP21.72■■□□□ 1.07
CLK3-216ENST00000564468 TEX14Q8IWB6 1497 aa21.71■■□□□ 1.07
CLK3-216ENST00000564468 HECW1Q76N89 1606 aa21.68■■□□□ 1.06
CLK3-216ENST00000564468 PLEKHD1A6NEE1 506 aa21.67■■□□□ 1.06
CLK3-216ENST00000564468 ADGRL1O94910 1474 aa21.66■■□□□ 1.06
CLK3-216ENST00000564468 CD109Q6YHK3 1445 aa21.66■■□□□ 1.06
CLK3-216ENST00000564468 ATP1B4Q9UN42 357 aaPredicted RBP21.64■■□□□ 1.05
CLK3-216ENST00000564468 CLIP1P30622 1438 aa21.63■■□□□ 1.05
CLK3-216ENST00000564468 MAGI3Q5TCQ9 1506 aa21.63■■□□□ 1.05
CLK3-216ENST00000564468 ABCA9Q8IUA7 1624 aa21.62■■□□□ 1.05
CLK3-216ENST00000564468 CDK11AQ9UQ88 783 aaPredicted RBP21.59■■□□□ 1.05
CLK3-216ENST00000564468 CDK13Q14004 1512 aaKnown RBP21.58■■□□□ 1.04
CLK3-216ENST00000564468 COL17A1Q9UMD9 1497 aaPredicted RBP21.58■■□□□ 1.04
CLK3-216ENST00000564468 CASKIN1Q8WXD9 1431 aa21.55■■□□□ 1.04
CLK3-216ENST00000564468 PCF11O94913 1555 aaKnown RBP21.53■■□□□ 1.04
CLK3-216ENST00000564468 LRRIQ1Q96JM4 1722 aa21.52■■□□□ 1.04
CLK3-216ENST00000564468 PHLDB1Q86UU1 1377 aa21.52■■□□□ 1.04
CLK3-216ENST00000564468 CCDC18Q5T9S5 1454 aa21.52■■□□□ 1.03
CLK3-216ENST00000564468 FYCO1Q9BQS8 1478 aa21.51■■□□□ 1.03
CLK3-216ENST00000564468 CEP162Q5TB80 1403 aa21.49■■□□□ 1.03
CLK3-216ENST00000564468 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLK3-216ENST00000564468 NEO1Q92859 1461 aa21.46■■□□□ 1.03
CLK3-216ENST00000564468 HECW2Q9P2P5 1572 aa21.46■■□□□ 1.03
CLK3-216ENST00000564468 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
CLK3-216ENST00000564468 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
CLK3-216ENST00000564468 TROQ12816 1431 aaPredicted RBP21.45■■□□□ 1.02
CLK3-216ENST00000564468 CFAP74Q9C0B2 1584 aa21.44■■□□□ 1.02
CLK3-216ENST00000564468 TTC37Q6PGP7 1564 aa21.44■■□□□ 1.02
CLK3-216ENST00000564468 KIF14Q15058 1648 aa21.44■■□□□ 1.02
CLK3-216ENST00000564468 MYO5CQ9NQX4 1742 aa21.41■■□□□ 1.02
CLK3-216ENST00000564468 FANCAO15360 1455 aa21.38■■□□□ 1.01
CLK3-216ENST00000564468 PLCH2O75038 1416 aa21.37■■□□□ 1.01
CLK3-216ENST00000564468 AKNAQ7Z591 1439 aa21.35■■□□□ 1.01
CLK3-216ENST00000564468 EFCAB2Q5VUJ9 269 aa21.32■■□□□ 1
CLK3-216ENST00000564468 DENND4BO75064 1496 aaPredicted RBP21.31■■□□□ 1
CLK3-216ENST00000564468 RAPGEF3O95398 923 aa21.29■■□□□ 1
CLK3-216ENST00000564468 RICTORQ6R327 1708 aa21.29■■□□□ 1
CLK3-216ENST00000564468 CDC42BPBQ9Y5S2 1711 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms