RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 KIF27Q86VH2 1401 aa27.1■■□□□ 1.93
USB1-208ENST00000563207 CUL7Q14999 1698 aa27.03■■□□□ 1.92
USB1-208ENST00000563207 KIAA0586Q9BVV6 1533 aa26.96■■□□□ 1.91
USB1-208ENST00000563207 CARMIL1Q5VZK9 1371 aa26.95■■□□□ 1.9
USB1-208ENST00000563207 KIF13AQ9H1H9 1805 aa26.86■■□□□ 1.89
USB1-208ENST00000563207 ADCY10Q96PN6 1610 aa26.85■■□□□ 1.89
USB1-208ENST00000563207 TTBK1Q5TCY1 1321 aaPredicted RBP26.8■■□□□ 1.88
USB1-208ENST00000563207 IQGAP2Q13576 1575 aa26.75■■□□□ 1.87
USB1-208ENST00000563207 NPM1P06748 294 aaKnown RBP eCLIP26.71■■□□□ 1.87
USB1-208ENST00000563207 PTPRGP23470 1445 aa26.71■■□□□ 1.87
USB1-208ENST00000563207 RAPGEF2Q9Y4G8 1499 aa26.7■■□□□ 1.87
USB1-208ENST00000563207 FAM69CQ0P6D2 419 aa26.69■■□□□ 1.86
USB1-208ENST00000563207 MAPKBP1O60336 1514 aa26.69■■□□□ 1.86
USB1-208ENST00000563207 ABCC10Q5T3U5 1492 aa26.68■■□□□ 1.86
USB1-208ENST00000563207 DISP1Q96F81 1524 aa26.65■■□□□ 1.86
USB1-208ENST00000563207 DIP2BQ9P265 1576 aa26.65■■□□□ 1.86
USB1-208ENST00000563207 CARMIL2Q6F5E8 1435 aa26.65■■□□□ 1.86
USB1-208ENST00000563207 TNIKQ9UKE5 1360 aa26.64■■□□□ 1.86
USB1-208ENST00000563207 UGGT2Q9NYU1 1516 aa26.57■■□□□ 1.84
USB1-208ENST00000563207 TSPOAP1O95153 1857 aa26.55■■□□□ 1.84
USB1-208ENST00000563207 ABCC2Q92887 1545 aa26.54■■□□□ 1.84
USB1-208ENST00000563207 KIAA0556O60303 1618 aa26.52■■□□□ 1.84
USB1-208ENST00000563207 CTTNBP2Q8WZ74 1663 aa26.52■■□□□ 1.84
USB1-208ENST00000563207 UACAQ9BZF9 1416 aa26.49■■□□□ 1.83
USB1-208ENST00000563207 PRXQ9BXM0 1461 aa26.49■■□□□ 1.83
USB1-208ENST00000563207 UHRF1BP1LA0JNW5 1464 aa26.48■■□□□ 1.83
USB1-208ENST00000563207 ASXL2Q76L83 1435 aa26.47■■□□□ 1.83
USB1-208ENST00000563207 AEBP2Q6ZN18 517 aaPredicted RBP26.42■■□□□ 1.82
USB1-208ENST00000563207 ZCCHC11Q5TAX3 1644 aaKnown RBP26.39■■□□□ 1.82
USB1-208ENST00000563207 KDM5BQ9UGL1 1544 aa26.39■■□□□ 1.81
USB1-208ENST00000563207 PLB1Q6P1J6 1458 aa26.37■■□□□ 1.81
USB1-208ENST00000563207 KDM6BO15054 1643 aa26.36■■□□□ 1.81
USB1-208ENST00000563207 PPRC1Q5VV67 1664 aaKnown RBP26.36■■□□□ 1.81
USB1-208ENST00000563207 GLI2P10070 1586 aa26.33■■□□□ 1.8
USB1-208ENST00000563207 CSRNP3Q8WYN3 585 aa26.32■■□□□ 1.8
USB1-208ENST00000563207 EPRSP07814 1512 aaKnown RBP26.3■■□□□ 1.8
USB1-208ENST00000563207 P3H3Q8IVL6 736 aa26.3■■□□□ 1.8
USB1-208ENST00000563207 GOLGA3Q08378 1498 aa26.29■■□□□ 1.8
USB1-208ENST00000563207 ABCA8O94911 1581 aa26.28■■□□□ 1.8
USB1-208ENST00000563207 FAM9AQ8IZU1 332 aaPredicted RBP26.26■■□□□ 1.79
USB1-208ENST00000563207 MAP3K4Q9Y6R4 1608 aa26.25■■□□□ 1.79
USB1-208ENST00000563207 COL17A1Q9UMD9 1497 aaPredicted RBP26.2■■□□□ 1.78
USB1-208ENST00000563207 ARID3CA6NKF2 412 aa26.2■■□□□ 1.78
USB1-208ENST00000563207 CHIC1Q5VXU3 224 aa26.2■■□□□ 1.78
USB1-208ENST00000563207 WDR7Q9Y4E6 1490 aa26.19■■□□□ 1.78
USB1-208ENST00000563207 RANGAP1P46060 587 aaPredicted RBP26.17■■□□□ 1.78
USB1-208ENST00000563207 KCNH8Q96L42 1107 aa26.16■■□□□ 1.78
USB1-208ENST00000563207 SAMD9Q5K651 1589 aa26.14■■□□□ 1.78
USB1-208ENST00000563207 KDM4FA0A1W2PPD8 638 aa26.13■■□□□ 1.77
USB1-208ENST00000563207 EEA1Q15075 1411 aa26.11■■□□□ 1.77
USB1-208ENST00000563207 ATP10BO94823 1461 aa26.08■■□□□ 1.77
USB1-208ENST00000563207 EHMT2Q96KQ7 1210 aa26.06■■□□□ 1.76
USB1-208ENST00000563207 TEX14Q8IWB6 1497 aa26.04■■□□□ 1.76
USB1-208ENST00000563207 CD109Q6YHK3 1445 aa26.04■■□□□ 1.76
USB1-208ENST00000563207 CFAP43Q8NDM7 1665 aa26.03■■□□□ 1.76
USB1-208ENST00000563207 FHOD3Q2V2M9 1422 aa26.02■■□□□ 1.76
USB1-208ENST00000563207 RAPGEF6Q8TEU7 1601 aa26.02■■□□□ 1.76
USB1-208ENST00000563207 KIF21BO75037 1637 aa25.99■■□□□ 1.75
USB1-208ENST00000563207 MAGI3Q5TCQ9 1506 aa25.97■■□□□ 1.75
USB1-208ENST00000563207 NUP153P49790 1475 aaKnown RBP25.94■■□□□ 1.74
USB1-208ENST00000563207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.91■■□□□ 1.74
USB1-208ENST00000563207 HNRNPUL2Q1KMD3 747 aaKnown RBP25.91■■□□□ 1.74
USB1-208ENST00000563207 ADGRL1O94910 1474 aa25.9■■□□□ 1.74
USB1-208ENST00000563207 ABCA9Q8IUA7 1624 aa25.88■■□□□ 1.73
USB1-208ENST00000563207 UBTFP17480 764 aaKnown RBP25.83■■□□□ 1.73
USB1-208ENST00000563207 EFCAB5A4FU69 1503 aa25.83■■□□□ 1.72
USB1-208ENST00000563207 ARAP3Q8WWN8 1544 aa25.78■■□□□ 1.72
USB1-208ENST00000563207 CDK13Q14004 1512 aaKnown RBP25.75■■□□□ 1.71
USB1-208ENST00000563207 RAPGEF3O95398 923 aa25.74■■□□□ 1.71
USB1-208ENST00000563207 ARHGAP35Q9NRY4 1499 aa25.73■■□□□ 1.71
USB1-208ENST00000563207 PLEKHD1A6NEE1 506 aa25.72■■□□□ 1.71
USB1-208ENST00000563207 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.68■■□□□ 1.7
USB1-208ENST00000563207 FRMPD1Q5SYB0 1578 aa25.67■■□□□ 1.7
USB1-208ENST00000563207 TTC37Q6PGP7 1564 aa25.67■■□□□ 1.7
USB1-208ENST00000563207 ATP1B4Q9UN42 357 aaPredicted RBP25.67■■□□□ 1.7
USB1-208ENST00000563207 NEO1Q92859 1461 aa25.66■■□□□ 1.7
USB1-208ENST00000563207 PHLDB1Q86UU1 1377 aa25.63■■□□□ 1.69
USB1-208ENST00000563207 LRRIQ1Q96JM4 1722 aa25.6■■□□□ 1.69
USB1-208ENST00000563207 FMN1Q68DA7 1419 aa25.59■■□□□ 1.69
USB1-208ENST00000563207 HECW1Q76N89 1606 aa25.58■■□□□ 1.69
USB1-208ENST00000563207 FANCAO15360 1455 aa25.58■■□□□ 1.69
USB1-208ENST00000563207 AKNAQ7Z591 1439 aa25.57■■□□□ 1.68
USB1-208ENST00000563207 RICTORQ6R327 1708 aa25.56■■□□□ 1.68
USB1-208ENST00000563207 KIF14Q15058 1648 aa25.53■■□□□ 1.68
USB1-208ENST00000563207 DENND4BO75064 1496 aaPredicted RBP25.52■■□□□ 1.68
USB1-208ENST00000563207 HECW2Q9P2P5 1572 aa25.52■■□□□ 1.68
USB1-208ENST00000563207 ADAMTSL3P82987 1691 aa25.48■■□□□ 1.67
USB1-208ENST00000563207 CFAP74Q9C0B2 1584 aa25.48■■□□□ 1.67
USB1-208ENST00000563207 PLCH2O75038 1416 aa25.47■■□□□ 1.67
USB1-208ENST00000563207 SIGLEC1Q9BZZ2 1709 aa25.46■■□□□ 1.67
USB1-208ENST00000563207 PCF11O94913 1555 aaKnown RBP25.45■■□□□ 1.66
USB1-208ENST00000563207 ARHGEF40Q8TER5 1519 aa25.44■■□□□ 1.66
USB1-208ENST00000563207 BCORL1Q5H9F3 1711 aa25.44■■□□□ 1.66
USB1-208ENST00000563207 MYO5CQ9NQX4 1742 aa25.44■■□□□ 1.66
USB1-208ENST00000563207 YEATS2Q9ULM3 1422 aa25.44■■□□□ 1.66
USB1-208ENST00000563207 ARID4BQ4LE39 1312 aaPredicted RBP25.43■■□□□ 1.66
USB1-208ENST00000563207 TROQ12816 1431 aaPredicted RBP25.42■■□□□ 1.66
USB1-208ENST00000563207 SCAPERQ9BY12 1400 aa25.42■■□□□ 1.66
USB1-208ENST00000563207 MADDQ8WXG6 1647 aa25.41■■□□□ 1.66
USB1-208ENST00000563207 CDK11AQ9UQ88 783 aaPredicted RBP25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms