RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 RIMBP3CA6NJZ7 1639 aa16.41■□□□□ 0.22
CLK3-208ENST00000562626 RIMBP3BA6NNM3 1639 aa16.41■□□□□ 0.22
CLK3-208ENST00000562626 RIMBP3Q9UFD9 1639 aa16.41■□□□□ 0.22
CLK3-208ENST00000562626 KIF21BO75037 1637 aa16.41■□□□□ 0.22
CLK3-208ENST00000562626 ERCC6L2Q5T890 1561 aa16.39■□□□□ 0.21
CLK3-208ENST00000562626 CSRNP3Q8WYN3 585 aa16.38■□□□□ 0.21
CLK3-208ENST00000562626 ARHGEF11O15085 1522 aa16.36■□□□□ 0.21
CLK3-208ENST00000562626 IQGAP2Q13576 1575 aa16.34■□□□□ 0.21
CLK3-208ENST00000562626 KIAA0586Q9BVV6 1533 aa16.32■□□□□ 0.2
CLK3-208ENST00000562626 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
CLK3-208ENST00000562626 EHMT2Q96KQ7 1210 aa16.26■□□□□ 0.19
CLK3-208ENST00000562626 ARAP1Q96P48 1450 aa16.26■□□□□ 0.19
CLK3-208ENST00000562626 PRG4Q92954 1404 aaPredicted RBP16.23■□□□□ 0.19
CLK3-208ENST00000562626 UGGT2Q9NYU1 1516 aa16.23■□□□□ 0.19
CLK3-208ENST00000562626 GOLGA3Q08378 1498 aa16.22■□□□□ 0.19
CLK3-208ENST00000562626 DISP1Q96F81 1524 aa16.21■□□□□ 0.19
CLK3-208ENST00000562626 KIAA0556O60303 1618 aa16.21■□□□□ 0.19
CLK3-208ENST00000562626 JPH4Q96JJ6 628 aa16.21■□□□□ 0.19
CLK3-208ENST00000562626 SAMD9Q5K651 1589 aa16.18■□□□□ 0.18
CLK3-208ENST00000562626 ILDR1Q86SU0 546 aaPredicted RBP16.17■□□□□ 0.18
CLK3-208ENST00000562626 ADCY10Q96PN6 1610 aa16.09■□□□□ 0.17
CLK3-208ENST00000562626 UBTFP17480 764 aaKnown RBP16.09■□□□□ 0.17
CLK3-208ENST00000562626 CYB5RLQ6IPT4 315 aa16.09■□□□□ 0.17
CLK3-208ENST00000562626 RANGAP1P46060 587 aaPredicted RBP16.07■□□□□ 0.16
CLK3-208ENST00000562626 CARMIL2Q6F5E8 1435 aa16.07■□□□□ 0.16
CLK3-208ENST00000562626 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
CLK3-208ENST00000562626 EFCAB5A4FU69 1503 aa16.05■□□□□ 0.16
CLK3-208ENST00000562626 ARHGAP35Q9NRY4 1499 aa16.04■□□□□ 0.16
CLK3-208ENST00000562626 TNIKQ9UKE5 1360 aa16.03■□□□□ 0.16
CLK3-208ENST00000562626 TTBK1Q5TCY1 1321 aaPredicted RBP16.03■□□□□ 0.16
CLK3-208ENST00000562626 P3H3Q8IVL6 736 aa16.03■□□□□ 0.16
CLK3-208ENST00000562626 FHOD3Q2V2M9 1422 aa16.02■□□□□ 0.16
CLK3-208ENST00000562626 PTPRGP23470 1445 aa16.02■□□□□ 0.15
CLK3-208ENST00000562626 LRRIQ1Q96JM4 1722 aa16.01■□□□□ 0.15
CLK3-208ENST00000562626 ABCA8O94911 1581 aa16■□□□□ 0.15
CLK3-208ENST00000562626 PLB1Q6P1J6 1458 aa15.98■□□□□ 0.15
CLK3-208ENST00000562626 RAPGEF6Q8TEU7 1601 aa15.97■□□□□ 0.15
CLK3-208ENST00000562626 ABCC2Q92887 1545 aa15.97■□□□□ 0.15
CLK3-208ENST00000562626 ZCCHC11Q5TAX3 1644 aaKnown RBP15.97■□□□□ 0.15
CLK3-208ENST00000562626 KIF13AQ9H1H9 1805 aa15.94■□□□□ 0.14
CLK3-208ENST00000562626 CLIP1P30622 1438 aa15.94■□□□□ 0.14
CLK3-208ENST00000562626 CEP162Q5TB80 1403 aa15.94■□□□□ 0.14
CLK3-208ENST00000562626 UACAQ9BZF9 1416 aa15.94■□□□□ 0.14
CLK3-208ENST00000562626 UHRF1BP1LA0JNW5 1464 aa15.93■□□□□ 0.14
CLK3-208ENST00000562626 PCF11O94913 1555 aaKnown RBP15.91■□□□□ 0.14
CLK3-208ENST00000562626 KDM5BQ9UGL1 1544 aa15.89■□□□□ 0.13
CLK3-208ENST00000562626 NUP153P49790 1475 aaKnown RBP15.88■□□□□ 0.13
CLK3-208ENST00000562626 MAPKBP1O60336 1514 aa15.85■□□□□ 0.13
CLK3-208ENST00000562626 HECW1Q76N89 1606 aa15.84■□□□□ 0.13
CLK3-208ENST00000562626 ATP10BO94823 1461 aa15.83■□□□□ 0.12
CLK3-208ENST00000562626 CDK13Q14004 1512 aaKnown RBP15.83■□□□□ 0.12
CLK3-208ENST00000562626 ARID3CA6NKF2 412 aa15.82■□□□□ 0.12
CLK3-208ENST00000562626 FMN1Q68DA7 1419 aa15.82■□□□□ 0.12
CLK3-208ENST00000562626 DIP2BQ9P265 1576 aa15.82■□□□□ 0.12
CLK3-208ENST00000562626 TSPOAP1O95153 1857 aa15.8■□□□□ 0.12
CLK3-208ENST00000562626 ASXL2Q76L83 1435 aa15.78■□□□□ 0.12
CLK3-208ENST00000562626 EPRSP07814 1512 aaKnown RBP15.78■□□□□ 0.12
CLK3-208ENST00000562626 CASKIN1Q8WXD9 1431 aa15.77■□□□□ 0.12
CLK3-208ENST00000562626 FYCO1Q9BQS8 1478 aa15.76■□□□□ 0.11
CLK3-208ENST00000562626 PPRC1Q5VV67 1664 aaKnown RBP15.75■□□□□ 0.11
CLK3-208ENST00000562626 CFAP43Q8NDM7 1665 aa15.75■□□□□ 0.11
CLK3-208ENST00000562626 MAGI3Q5TCQ9 1506 aa15.73■□□□□ 0.11
CLK3-208ENST00000562626 WDR7Q9Y4E6 1490 aa15.73■□□□□ 0.11
CLK3-208ENST00000562626 NPM1P06748 294 aaKnown RBP eCLIP15.73■□□□□ 0.11
CLK3-208ENST00000562626 MAP3K4Q9Y6R4 1608 aa15.72■□□□□ 0.11
CLK3-208ENST00000562626 ABCC10Q5T3U5 1492 aa15.72■□□□□ 0.11
CLK3-208ENST00000562626 VPS8Q8N3P4 1428 aa15.71■□□□□ 0.11
CLK3-208ENST00000562626 KIF14Q15058 1648 aa15.71■□□□□ 0.11
CLK3-208ENST00000562626 GLI2P10070 1586 aa15.7■□□□□ 0.1
CLK3-208ENST00000562626 ATP1B4Q9UN42 357 aaPredicted RBP15.7■□□□□ 0.1
CLK3-208ENST00000562626 TTC37Q6PGP7 1564 aa15.67■□□□□ 0.1
CLK3-208ENST00000562626 CCDC18Q5T9S5 1454 aa15.67■□□□□ 0.1
CLK3-208ENST00000562626 ABCA9Q8IUA7 1624 aa15.67■□□□□ 0.1
CLK3-208ENST00000562626 TIAM1Q13009 1591 aa15.66■□□□□ 0.1
CLK3-208ENST00000562626 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
CLK3-208ENST00000562626 HNRNPUL2Q1KMD3 747 aaKnown RBP15.64■□□□□ 0.09
CLK3-208ENST00000562626 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.63■□□□□ 0.09
CLK3-208ENST00000562626 CDC42BPAQ5VT25 1732 aa15.63■□□□□ 0.09
CLK3-208ENST00000562626 MYO5CQ9NQX4 1742 aa15.63■□□□□ 0.09
CLK3-208ENST00000562626 FAM69CQ0P6D2 419 aa15.62■□□□□ 0.09
CLK3-208ENST00000562626 CDC42BPBQ9Y5S2 1711 aa15.61■□□□□ 0.09
CLK3-208ENST00000562626 KCNH8Q96L42 1107 aa15.61■□□□□ 0.09
CLK3-208ENST00000562626 TROQ12816 1431 aaPredicted RBP15.6■□□□□ 0.09
CLK3-208ENST00000562626 EHBP1L1Q8N3D4 1523 aa15.57■□□□□ 0.08
CLK3-208ENST00000562626 PLEKHD1A6NEE1 506 aa15.56■□□□□ 0.08
CLK3-208ENST00000562626 PREX2Q70Z35 1606 aa15.55■□□□□ 0.08
CLK3-208ENST00000562626 MAP3K1Q13233 1512 aa15.55■□□□□ 0.08
CLK3-208ENST00000562626 SUPT6HQ7KZ85 1726 aaKnown RBP15.54■□□□□ 0.08
CLK3-208ENST00000562626 LRRC9Q6ZRR7 1453 aa15.52■□□□□ 0.08
CLK3-208ENST00000562626 CD109Q6YHK3 1445 aa15.52■□□□□ 0.08
CLK3-208ENST00000562626 KANK4Q5T7N3 995 aaPredicted RBP15.51■□□□□ 0.07
CLK3-208ENST00000562626 ITSN2Q9NZM3 1697 aa15.49■□□□□ 0.07
CLK3-208ENST00000562626 CDK11AQ9UQ88 783 aaPredicted RBP15.49■□□□□ 0.07
CLK3-208ENST00000562626 MTUS2Q5JR59 1369 aa15.49■□□□□ 0.07
CLK3-208ENST00000562626 KDM6BO15054 1643 aa15.48■□□□□ 0.07
CLK3-208ENST00000562626 COL17A1Q9UMD9 1497 aaPredicted RBP15.47■□□□□ 0.07
CLK3-208ENST00000562626 NCOA2Q15596 1464 aa15.46■□□□□ 0.07
CLK3-208ENST00000562626 RICTORQ6R327 1708 aa15.46■□□□□ 0.07
CLK3-208ENST00000562626 CFAP74Q9C0B2 1584 aa15.46■□□□□ 0.07
CLK3-208ENST00000562626 ARAP3Q8WWN8 1544 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms