RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 TRHP20396 242 aaPredicted RBP27.67■■■□□ 2.02
LMX1B-204ENST00000561065 JPH4Q96JJ6 628 aa27.65■■■□□ 2.02
LMX1B-204ENST00000561065 KIAA0586Q9BVV6 1533 aa27.64■■■□□ 2.01
LMX1B-204ENST00000561065 CARMIL1Q5VZK9 1371 aa27.62■■■□□ 2.01
LMX1B-204ENST00000561065 ADCY10Q96PN6 1610 aa27.47■■□□□ 1.99
LMX1B-204ENST00000561065 IQGAP2Q13576 1575 aa27.47■■□□□ 1.99
LMX1B-204ENST00000561065 KIF13AQ9H1H9 1805 aa27.44■■□□□ 1.98
LMX1B-204ENST00000561065 RAPGEF2Q9Y4G8 1499 aa27.42■■□□□ 1.98
LMX1B-204ENST00000561065 MAPKBP1O60336 1514 aa27.33■■□□□ 1.97
LMX1B-204ENST00000561065 DISP1Q96F81 1524 aa27.33■■□□□ 1.97
LMX1B-204ENST00000561065 CTTNBP2Q8WZ74 1663 aa27.33■■□□□ 1.97
LMX1B-204ENST00000561065 UGGT2Q9NYU1 1516 aa27.31■■□□□ 1.96
LMX1B-204ENST00000561065 CARMIL2Q6F5E8 1435 aa27.28■■□□□ 1.96
LMX1B-204ENST00000561065 PTPRGP23470 1445 aa27.27■■□□□ 1.96
LMX1B-204ENST00000561065 PRXQ9BXM0 1461 aa27.27■■□□□ 1.96
LMX1B-204ENST00000561065 DIP2BQ9P265 1576 aa27.26■■□□□ 1.96
LMX1B-204ENST00000561065 KIAA0556O60303 1618 aa27.26■■□□□ 1.95
LMX1B-204ENST00000561065 TNIKQ9UKE5 1360 aa27.26■■□□□ 1.95
LMX1B-204ENST00000561065 ABCC10Q5T3U5 1492 aa27.23■■□□□ 1.95
LMX1B-204ENST00000561065 TTBK1Q5TCY1 1321 aaPredicted RBP27.19■■□□□ 1.94
LMX1B-204ENST00000561065 ABCC2Q92887 1545 aa27.17■■□□□ 1.94
LMX1B-204ENST00000561065 UHRF1BP1LA0JNW5 1464 aa27.15■■□□□ 1.94
LMX1B-204ENST00000561065 NPM1P06748 294 aaKnown RBP eCLIP27.15■■□□□ 1.94
LMX1B-204ENST00000561065 UACAQ9BZF9 1416 aa27.11■■□□□ 1.93
LMX1B-204ENST00000561065 FAM69CQ0P6D2 419 aa27.09■■□□□ 1.93
LMX1B-204ENST00000561065 ZCCHC11Q5TAX3 1644 aaKnown RBP27.05■■□□□ 1.92
LMX1B-204ENST00000561065 TSPOAP1O95153 1857 aa27.04■■□□□ 1.92
LMX1B-204ENST00000561065 KDM5BQ9UGL1 1544 aa27.04■■□□□ 1.92
LMX1B-204ENST00000561065 ASXL2Q76L83 1435 aa27.03■■□□□ 1.92
LMX1B-204ENST00000561065 GOLGA3Q08378 1498 aa27.02■■□□□ 1.92
LMX1B-204ENST00000561065 PLB1Q6P1J6 1458 aa26.99■■□□□ 1.91
LMX1B-204ENST00000561065 EEA1Q15075 1411 aa26.98■■□□□ 1.91
LMX1B-204ENST00000561065 CSRNP3Q8WYN3 585 aa26.98■■□□□ 1.91
LMX1B-204ENST00000561065 ABCA8O94911 1581 aa26.98■■□□□ 1.91
LMX1B-204ENST00000561065 PPRC1Q5VV67 1664 aaKnown RBP26.97■■□□□ 1.91
LMX1B-204ENST00000561065 GLI2P10070 1586 aa26.96■■□□□ 1.91
LMX1B-204ENST00000561065 SAMD9Q5K651 1589 aa26.94■■□□□ 1.9
LMX1B-204ENST00000561065 KDM6BO15054 1643 aa26.9■■□□□ 1.9
LMX1B-204ENST00000561065 EPRSP07814 1512 aaKnown RBP26.9■■□□□ 1.9
LMX1B-204ENST00000561065 KIF21BO75037 1637 aa26.88■■□□□ 1.89
LMX1B-204ENST00000561065 MAP3K4Q9Y6R4 1608 aa26.88■■□□□ 1.89
LMX1B-204ENST00000561065 WDR7Q9Y4E6 1490 aa26.83■■□□□ 1.89
LMX1B-204ENST00000561065 FAM9AQ8IZU1 332 aaPredicted RBP26.83■■□□□ 1.89
LMX1B-204ENST00000561065 CHIC1Q5VXU3 224 aa26.79■■□□□ 1.88
LMX1B-204ENST00000561065 P3H3Q8IVL6 736 aa26.77■■□□□ 1.88
LMX1B-204ENST00000561065 RAPGEF6Q8TEU7 1601 aa26.73■■□□□ 1.87
LMX1B-204ENST00000561065 FHOD3Q2V2M9 1422 aa26.7■■□□□ 1.86
LMX1B-204ENST00000561065 CFAP43Q8NDM7 1665 aa26.7■■□□□ 1.86
LMX1B-204ENST00000561065 ATP10BO94823 1461 aa26.68■■□□□ 1.86
LMX1B-204ENST00000561065 COL17A1Q9UMD9 1497 aaPredicted RBP26.68■■□□□ 1.86
LMX1B-204ENST00000561065 EFCAB5A4FU69 1503 aa26.65■■□□□ 1.86
LMX1B-204ENST00000561065 TEX14Q8IWB6 1497 aa26.65■■□□□ 1.86
LMX1B-204ENST00000561065 ARID3CA6NKF2 412 aa26.64■■□□□ 1.85
LMX1B-204ENST00000561065 RANGAP1P46060 587 aaPredicted RBP26.64■■□□□ 1.85
LMX1B-204ENST00000561065 NUP153P49790 1475 aaKnown RBP26.63■■□□□ 1.85
LMX1B-204ENST00000561065 MAGI3Q5TCQ9 1506 aa26.6■■□□□ 1.85
LMX1B-204ENST00000561065 CD109Q6YHK3 1445 aa26.57■■□□□ 1.84
LMX1B-204ENST00000561065 AEBP2Q6ZN18 517 aaPredicted RBP26.57■■□□□ 1.84
LMX1B-204ENST00000561065 KCNH8Q96L42 1107 aa26.56■■□□□ 1.84
LMX1B-204ENST00000561065 ABCA9Q8IUA7 1624 aa26.55■■□□□ 1.84
LMX1B-204ENST00000561065 EHMT2Q96KQ7 1210 aa26.54■■□□□ 1.84
LMX1B-204ENST00000561065 ARHGAP35Q9NRY4 1499 aa26.48■■□□□ 1.83
LMX1B-204ENST00000561065 UBTFP17480 764 aaKnown RBP26.44■■□□□ 1.82
LMX1B-204ENST00000561065 CDK13Q14004 1512 aaKnown RBP26.43■■□□□ 1.82
LMX1B-204ENST00000561065 KDM4FA0A1W2PPD8 638 aa26.42■■□□□ 1.82
LMX1B-204ENST00000561065 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.38■■□□□ 1.81
LMX1B-204ENST00000561065 HNRNPUL2Q1KMD3 747 aaKnown RBP26.38■■□□□ 1.81
LMX1B-204ENST00000561065 HECW1Q76N89 1606 aa26.37■■□□□ 1.81
LMX1B-204ENST00000561065 ARAP3Q8WWN8 1544 aa26.37■■□□□ 1.81
LMX1B-204ENST00000561065 TTC37Q6PGP7 1564 aa26.36■■□□□ 1.81
LMX1B-204ENST00000561065 ADGRL1O94910 1474 aa26.36■■□□□ 1.81
LMX1B-204ENST00000561065 LRRIQ1Q96JM4 1722 aa26.34■■□□□ 1.81
LMX1B-204ENST00000561065 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.34■■□□□ 1.81
LMX1B-204ENST00000561065 FMN1Q68DA7 1419 aa26.34■■□□□ 1.81
LMX1B-204ENST00000561065 FRMPD1Q5SYB0 1578 aa26.31■■□□□ 1.8
LMX1B-204ENST00000561065 NEO1Q92859 1461 aa26.31■■□□□ 1.8
LMX1B-204ENST00000561065 PCF11O94913 1555 aaKnown RBP26.25■■□□□ 1.79
LMX1B-204ENST00000561065 PLEKHD1A6NEE1 506 aa26.25■■□□□ 1.79
LMX1B-204ENST00000561065 PHLDB1Q86UU1 1377 aa26.23■■□□□ 1.79
LMX1B-204ENST00000561065 CFAP74Q9C0B2 1584 aa26.22■■□□□ 1.79
LMX1B-204ENST00000561065 RICTORQ6R327 1708 aa26.22■■□□□ 1.79
LMX1B-204ENST00000561065 KIF14Q15058 1648 aa26.21■■□□□ 1.79
LMX1B-204ENST00000561065 FANCAO15360 1455 aa26.18■■□□□ 1.78
LMX1B-204ENST00000561065 RAPGEF3O95398 923 aa26.16■■□□□ 1.78
LMX1B-204ENST00000561065 MYO5CQ9NQX4 1742 aa26.15■■□□□ 1.78
LMX1B-204ENST00000561065 ATP1B4Q9UN42 357 aaPredicted RBP26.14■■□□□ 1.78
LMX1B-204ENST00000561065 AKNAQ7Z591 1439 aa26.14■■□□□ 1.77
LMX1B-204ENST00000561065 ARHGEF40Q8TER5 1519 aa26.12■■□□□ 1.77
LMX1B-204ENST00000561065 CASKIN1Q8WXD9 1431 aa26.12■■□□□ 1.77
LMX1B-204ENST00000561065 TROQ12816 1431 aaPredicted RBP26.11■■□□□ 1.77
LMX1B-204ENST00000561065 DENND4BO75064 1496 aaPredicted RBP26.1■■□□□ 1.77
LMX1B-204ENST00000561065 CLIP1P30622 1438 aa26.1■■□□□ 1.77
LMX1B-204ENST00000561065 PLCH2O75038 1416 aa26.09■■□□□ 1.77
LMX1B-204ENST00000561065 ZMYM4Q5VZL5 1548 aa26.08■■□□□ 1.77
LMX1B-204ENST00000561065 CCDC18Q5T9S5 1454 aa26.07■■□□□ 1.76
LMX1B-204ENST00000561065 FYCO1Q9BQS8 1478 aa26.07■■□□□ 1.76
LMX1B-204ENST00000561065 ADAMTSL3P82987 1691 aa26.04■■□□□ 1.76
LMX1B-204ENST00000561065 SIGLEC1Q9BZZ2 1709 aa26.03■■□□□ 1.76
LMX1B-204ENST00000561065 BCORL1Q5H9F3 1711 aa26.02■■□□□ 1.76
LMX1B-204ENST00000561065 CDC42BPBQ9Y5S2 1711 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms