RNA–Protein interactions for RNA: ENST00000560595.5

ETFA-215, Transcript of electron transfer flavoprotein subunit alpha, human

TSL 1 (best)

Gene ETFA, Length 917 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ETFA-215	ENST00000560595	PRX	Q9BXM0	1461 aa		34.27	■■■■□ 3.08
ETFA-215	ENST00000560595	ARAP1	Q96P48	1450 aa		34.27	■■■■□ 3.08
ETFA-215	ENST00000560595	KIAA0586	Q9BVV6	1533 aa		34.25	■■■■□ 3.07
ETFA-215	ENST00000560595	ERCC6L2	Q5T890	1561 aa		34.24	■■■■□ 3.07
ETFA-215	ENST00000560595	CSRNP3	Q8WYN3	585 aa		34.21	■■■■□ 3.07
ETFA-215	ENST00000560595	FAM9A	Q8IZU1	332 aa	Predicted RBP	34.16	■■■■□ 3.06
ETFA-215	ENST00000560595	JPH4	Q96JJ6	628 aa		34.16	■■■■□ 3.06
ETFA-215	ENST00000560595	IQGAP2	Q13576	1575 aa		34.15	■■■■□ 3.06
ETFA-215	ENST00000560595	CTTNBP2	Q8WZ74	1663 aa		34.14	■■■■□ 3.06
ETFA-215	ENST00000560595	PRG4	Q92954	1404 aa	Predicted RBP	34.13	■■■■□ 3.05
ETFA-215	ENST00000560595	CYB5RL	Q6IPT4	315 aa		34.11	■■■■□ 3.05
ETFA-215	ENST00000560595	KIF21B	O75037	1637 aa		34.02	■■■■□ 3.04
ETFA-215	ENST00000560595	UGGT2	Q9NYU1	1516 aa		33.94	■■■■□ 3.02
ETFA-215	ENST00000560595	DISP1	Q96F81	1524 aa		33.89	■■■■□ 3.02
ETFA-215	ENST00000560595	CARMIL2	Q6F5E8	1435 aa		33.87	■■■■□ 3.01
ETFA-215	ENST00000560595	KIAA0556	O60303	1618 aa		33.83	■■■■□ 3.01
ETFA-215	ENST00000560595	GOLGA3	Q08378	1498 aa		33.78	■■■■□ 3
ETFA-215	ENST00000560595	TNIK	Q9UKE5	1360 aa		33.75	■■■□□ 2.99
ETFA-215	ENST00000560595	EHMT2	Q96KQ7	1210 aa		33.72	■■■□□ 2.99
ETFA-215	ENST00000560595	PTPRG	P23470	1445 aa		33.71	■■■□□ 2.99
ETFA-215	ENST00000560595	ADCY10	Q96PN6	1610 aa		33.68	■■■□□ 2.98
ETFA-215	ENST00000560595	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.67	■■■□□ 2.98
ETFA-215	ENST00000560595	SAMD9	Q5K651	1589 aa		33.67	■■■□□ 2.98
ETFA-215	ENST00000560595	UBTF	P17480	764 aa	Known RBP	33.61	■■■□□ 2.97
ETFA-215	ENST00000560595	RANGAP1	P46060	587 aa	Predicted RBP	33.54	■■■□□ 2.96
ETFA-215	ENST00000560595	P3H3	Q8IVL6	736 aa		33.51	■■■□□ 2.95
ETFA-215	ENST00000560595	UACA	Q9BZF9	1416 aa		33.51	■■■□□ 2.95
ETFA-215	ENST00000560595	EFCAB5	A4FU69	1503 aa		33.5	■■■□□ 2.95
ETFA-215	ENST00000560595	UHRF1BP1L	A0JNW5	1464 aa		33.5	■■■□□ 2.95
ETFA-215	ENST00000560595	ABCC2	Q92887	1545 aa		33.49	■■■□□ 2.95
ETFA-215	ENST00000560595	PLB1	Q6P1J6	1458 aa		33.44	■■■□□ 2.94
ETFA-215	ENST00000560595	ABCA8	O94911	1581 aa		33.44	■■■□□ 2.94
ETFA-215	ENST00000560595	FHOD3	Q2V2M9	1422 aa		33.42	■■■□□ 2.94
ETFA-215	ENST00000560595	NPM1	P06748	294 aa	Known RBP eCLIP	33.4	■■■□□ 2.94
ETFA-215	ENST00000560595	MAPKBP1	O60336	1514 aa		33.39	■■■□□ 2.94
ETFA-215	ENST00000560595	TRH	P20396	242 aa	Predicted RBP	33.36	■■■□□ 2.93
ETFA-215	ENST00000560595	ARHGAP35	Q9NRY4	1499 aa		33.35	■■■□□ 2.93
ETFA-215	ENST00000560595	ZCCHC11	Q5TAX3	1644 aa	Known RBP	33.35	■■■□□ 2.93
ETFA-215	ENST00000560595	KDM5B	Q9UGL1	1544 aa		33.33	■■■□□ 2.93
ETFA-215	ENST00000560595	RAPGEF6	Q8TEU7	1601 aa		33.31	■■■□□ 2.92
ETFA-215	ENST00000560595	KIF13A	Q9H1H9	1805 aa		33.3	■■■□□ 2.92
ETFA-215	ENST00000560595	DIP2B	Q9P265	1576 aa		33.21	■■■□□ 2.91
ETFA-215	ENST00000560595	ASXL2	Q76L83	1435 aa		33.2	■■■□□ 2.91
ETFA-215	ENST00000560595	ABCC10	Q5T3U5	1492 aa		33.19	■■■□□ 2.9
ETFA-215	ENST00000560595	CLIP1	P30622	1438 aa		33.16	■■■□□ 2.9
ETFA-215	ENST00000560595	NUP153	P49790	1475 aa	Known RBP	33.15	■■■□□ 2.9
ETFA-215	ENST00000560595	LOC105371045	A0A1W2PR82	267 aa		33.14	■■■□□ 2.9
ETFA-215	ENST00000560595	FMN1	Q68DA7	1419 aa		33.13	■■■□□ 2.89
ETFA-215	ENST00000560595	ATP10B	O94823	1461 aa		33.12	■■■□□ 2.89
ETFA-215	ENST00000560595	ARID3C	A6NKF2	412 aa		33.11	■■■□□ 2.89
ETFA-215	ENST00000560595	WDR7	Q9Y4E6	1490 aa		33.07	■■■□□ 2.88
ETFA-215	ENST00000560595	FAM69C	Q0P6D2	419 aa		33.07	■■■□□ 2.88
ETFA-215	ENST00000560595	CEP162	Q5TB80	1403 aa		33.06	■■■□□ 2.88
ETFA-215	ENST00000560595	HECW1	Q76N89	1606 aa		33.04	■■■□□ 2.88
ETFA-215	ENST00000560595	EPRS	P07814	1512 aa	Known RBP	33.02	■■■□□ 2.88
ETFA-215	ENST00000560595	GLI2	P10070	1586 aa		33.02	■■■□□ 2.88
ETFA-215	ENST00000560595	PCF11	O94913	1555 aa	Known RBP	33	■■■□□ 2.87
ETFA-215	ENST00000560595	TSPOAP1	O95153	1857 aa		32.99	■■■□□ 2.87
ETFA-215	ENST00000560595	LRRIQ1	Q96JM4	1722 aa		32.97	■■■□□ 2.87
ETFA-215	ENST00000560595	CDK13	Q14004	1512 aa	Known RBP	32.96	■■■□□ 2.87
ETFA-215	ENST00000560595	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.92	■■■□□ 2.86
ETFA-215	ENST00000560595	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.92	■■■□□ 2.86
ETFA-215	ENST00000560595	MAP3K4	Q9Y6R4	1608 aa		32.91	■■■□□ 2.86
ETFA-215	ENST00000560595	CASKIN1	Q8WXD9	1431 aa		32.91	■■■□□ 2.86
ETFA-215	ENST00000560595	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.9	■■■□□ 2.86
ETFA-215	ENST00000560595	PPRC1	Q5VV67	1664 aa	Known RBP	32.88	■■■□□ 2.85
ETFA-215	ENST00000560595	FYCO1	Q9BQS8	1478 aa		32.86	■■■□□ 2.85
ETFA-215	ENST00000560595	KCNH8	Q96L42	1107 aa		32.86	■■■□□ 2.85
ETFA-215	ENST00000560595	CFAP43	Q8NDM7	1665 aa		32.85	■■■□□ 2.85
ETFA-215	ENST00000560595	ABCA9	Q8IUA7	1624 aa		32.79	■■■□□ 2.84
ETFA-215	ENST00000560595	PLEKHD1	A6NEE1	506 aa		32.78	■■■□□ 2.84
ETFA-215	ENST00000560595	CCDC18	Q5T9S5	1454 aa		32.78	■■■□□ 2.84
ETFA-215	ENST00000560595	CD109	Q6YHK3	1445 aa		32.72	■■■□□ 2.83
ETFA-215	ENST00000560595	TEX14	Q8IWB6	1497 aa		32.67	■■■□□ 2.82
ETFA-215	ENST00000560595	MAGI3	Q5TCQ9	1506 aa		32.67	■■■□□ 2.82
ETFA-215	ENST00000560595	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.66	■■■□□ 2.82
ETFA-215	ENST00000560595	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.66	■■■□□ 2.82	5e-9	■□□□□ 10.1
ETFA-215	ENST00000560595	TTC37	Q6PGP7	1564 aa		32.66	■■■□□ 2.82
ETFA-215	ENST00000560595	TRO	Q12816	1431 aa	Predicted RBP	32.65	■■■□□ 2.82
ETFA-215	ENST00000560595	VPS8	Q8N3P4	1428 aa		32.65	■■■□□ 2.82
ETFA-215	ENST00000560595	KIF14	Q15058	1648 aa		32.64	■■■□□ 2.82
ETFA-215	ENST00000560595	KDM6B	O15054	1643 aa		32.63	■■■□□ 2.81
ETFA-215	ENST00000560595	MYO5C	Q9NQX4	1742 aa		32.52	■■■□□ 2.8
ETFA-215	ENST00000560595	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.48	■■■□□ 2.79
ETFA-215	ENST00000560595	TIAM1	Q13009	1591 aa		32.47	■■■□□ 2.79
ETFA-215	ENST00000560595	CFAP74	Q9C0B2	1584 aa		32.45	■■■□□ 2.78
ETFA-215	ENST00000560595	NEO1	Q92859	1461 aa		32.44	■■■□□ 2.78
ETFA-215	ENST00000560595	EHBP1L1	Q8N3D4	1523 aa		32.42	■■■□□ 2.78
ETFA-215	ENST00000560595	MTUS2	Q5JR59	1369 aa		32.42	■■■□□ 2.78
ETFA-215	ENST00000560595	PLCH2	O75038	1416 aa		32.41	■■■□□ 2.78
ETFA-215	ENST00000560595	FANCA	O15360	1455 aa		32.4	■■■□□ 2.78
ETFA-215	ENST00000560595	CDC42BPA	Q5VT25	1732 aa		32.4	■■■□□ 2.78
ETFA-215	ENST00000560595	ARAP3	Q8WWN8	1544 aa		32.39	■■■□□ 2.78
ETFA-215	ENST00000560595	CDC42BPB	Q9Y5S2	1711 aa		32.39	■■■□□ 2.78
ETFA-215	ENST00000560595	PREX2	Q70Z35	1606 aa		32.38	■■■□□ 2.77
ETFA-215	ENST00000560595	PHLDB1	Q86UU1	1377 aa		32.37	■■■□□ 2.77
ETFA-215	ENST00000560595	MAP3K1	Q13233	1512 aa		32.35	■■■□□ 2.77
ETFA-215	ENST00000560595	AKNA	Q7Z591	1439 aa		32.33	■■■□□ 2.77
ETFA-215	ENST00000560595	ARHGAP5	Q13017	1502 aa		32.32	■■■□□ 2.76
ETFA-215	ENST00000560595	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.29	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms