RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CHIC1Q5VXU3 224 aa15.81■□□□□ 0.12
LDLR-211ENST00000560173 SHROOM2Q13796 1616 aa15.79■□□□□ 0.12
LDLR-211ENST00000560173 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
LDLR-211ENST00000560173 KIAA0586Q9BVV6 1533 aa15.75■□□□□ 0.11
LDLR-211ENST00000560173 PRXQ9BXM0 1461 aa15.74■□□□□ 0.11
LDLR-211ENST00000560173 EEA1Q15075 1411 aa15.73■□□□□ 0.11
LDLR-211ENST00000560173 ERCC6L2Q5T890 1561 aa15.73■□□□□ 0.11
LDLR-211ENST00000560173 JPH4Q96JJ6 628 aa15.7■□□□□ 0.1
LDLR-211ENST00000560173 PRG4Q92954 1404 aaPredicted RBP15.69■□□□□ 0.1
LDLR-211ENST00000560173 CSRNP3Q8WYN3 585 aa15.68■□□□□ 0.1
LDLR-211ENST00000560173 IQGAP2Q13576 1575 aa15.66■□□□□ 0.1
LDLR-211ENST00000560173 FAM9AQ8IZU1 332 aaPredicted RBP15.62■□□□□ 0.09
LDLR-211ENST00000560173 CTTNBP2Q8WZ74 1663 aa15.6■□□□□ 0.09
LDLR-211ENST00000560173 UGGT2Q9NYU1 1516 aa15.59■□□□□ 0.09
LDLR-211ENST00000560173 KIF13AQ9H1H9 1805 aa15.59■□□□□ 0.09
LDLR-211ENST00000560173 KIF21BO75037 1637 aa15.57■□□□□ 0.08
LDLR-211ENST00000560173 CARMIL2Q6F5E8 1435 aa15.56■□□□□ 0.08
LDLR-211ENST00000560173 DISP1Q96F81 1524 aa15.56■□□□□ 0.08
LDLR-211ENST00000560173 TNIKQ9UKE5 1360 aa15.52■□□□□ 0.08
LDLR-211ENST00000560173 KIAA0556O60303 1618 aa15.52■□□□□ 0.08
LDLR-211ENST00000560173 PTPRGP23470 1445 aa15.51■□□□□ 0.07
LDLR-211ENST00000560173 GOLGA3Q08378 1498 aa15.49■□□□□ 0.07
LDLR-211ENST00000560173 ADCY10Q96PN6 1610 aa15.46■□□□□ 0.07
LDLR-211ENST00000560173 SAMD9Q5K651 1589 aa15.44■□□□□ 0.06
LDLR-211ENST00000560173 TTBK1Q5TCY1 1321 aaPredicted RBP15.43■□□□□ 0.06
LDLR-211ENST00000560173 UHRF1BP1LA0JNW5 1464 aa15.41■□□□□ 0.06
LDLR-211ENST00000560173 UACAQ9BZF9 1416 aa15.41■□□□□ 0.06
LDLR-211ENST00000560173 ILDR1Q86SU0 546 aaPredicted RBP15.4■□□□□ 0.06
LDLR-211ENST00000560173 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
LDLR-211ENST00000560173 ABCC2Q92887 1545 aa15.39■□□□□ 0.05
LDLR-211ENST00000560173 UBTFP17480 764 aaKnown RBP15.39■□□□□ 0.05
LDLR-211ENST00000560173 EFCAB5A4FU69 1503 aa15.37■□□□□ 0.05
LDLR-211ENST00000560173 MAPKBP1O60336 1514 aa15.37■□□□□ 0.05
LDLR-211ENST00000560173 PLB1Q6P1J6 1458 aa15.36■□□□□ 0.05
LDLR-211ENST00000560173 NPM1P06748 294 aaKnown RBP eCLIP15.36■□□□□ 0.05
LDLR-211ENST00000560173 ABCA8O94911 1581 aa15.36■□□□□ 0.05
LDLR-211ENST00000560173 P3H3Q8IVL6 736 aa15.35■□□□□ 0.05
LDLR-211ENST00000560173 KDM4FA0A1W2PPD8 638 aa15.34■□□□□ 0.05
LDLR-211ENST00000560173 RANGAP1P46060 587 aaPredicted RBP15.34■□□□□ 0.05
LDLR-211ENST00000560173 FHOD3Q2V2M9 1422 aa15.34■□□□□ 0.05
LDLR-211ENST00000560173 ABCC10Q5T3U5 1492 aa15.33■□□□□ 0.05
LDLR-211ENST00000560173 KDM5BQ9UGL1 1544 aa15.33■□□□□ 0.05
LDLR-211ENST00000560173 KDM6BO15054 1643 aa15.32■□□□□ 0.04
LDLR-211ENST00000560173 DIP2BQ9P265 1576 aa15.32■□□□□ 0.04
LDLR-211ENST00000560173 FAM69CQ0P6D2 419 aa15.3■□□□□ 0.04
LDLR-211ENST00000560173 TSPOAP1O95153 1857 aa15.29■□□□□ 0.04
LDLR-211ENST00000560173 ARHGAP35Q9NRY4 1499 aa15.29■□□□□ 0.04
LDLR-211ENST00000560173 ZCCHC11Q5TAX3 1644 aaKnown RBP15.28■□□□□ 0.04
LDLR-211ENST00000560173 ASXL2Q76L83 1435 aa15.27■□□□□ 0.04
LDLR-211ENST00000560173 RAPGEF6Q8TEU7 1601 aa15.26■□□□□ 0.03
LDLR-211ENST00000560173 NUP153P49790 1475 aaKnown RBP15.22■□□□□ 0.03
LDLR-211ENST00000560173 ATP10BO94823 1461 aa15.21■□□□□ 0.03
LDLR-211ENST00000560173 WDR7Q9Y4E6 1490 aa15.2■□□□□ 0.02
LDLR-211ENST00000560173 FMN1Q68DA7 1419 aa15.2■□□□□ 0.02
LDLR-211ENST00000560173 CLIP1P30622 1438 aa15.19■□□□□ 0.02
LDLR-211ENST00000560173 EPRSP07814 1512 aaKnown RBP15.19■□□□□ 0.02
LDLR-211ENST00000560173 GLI2P10070 1586 aa15.19■□□□□ 0.02
LDLR-211ENST00000560173 ARID3CA6NKF2 412 aa15.18■□□□□ 0.02
LDLR-211ENST00000560173 CEP162Q5TB80 1403 aa15.14■□□□□ 0.01
LDLR-211ENST00000560173 HECW1Q76N89 1606 aa15.14■□□□□ 0.01
LDLR-211ENST00000560173 LOC105371045A0A1W2PR82 267 aa15.13■□□□□ 0.01
LDLR-211ENST00000560173 ADGRL1O94910 1474 aa15.13■□□□□ 0.01
LDLR-211ENST00000560173 PPRC1Q5VV67 1664 aaKnown RBP15.12■□□□□ 0.01
LDLR-211ENST00000560173 HECW2Q9P2P5 1572 aa15.11■□□□□ 0.01
LDLR-211ENST00000560173 MAP3K4Q9Y6R4 1608 aa15.11■□□□□ 0.01
LDLR-211ENST00000560173 CDK13Q14004 1512 aaKnown RBP15.11■□□□□ 0.01
LDLR-211ENST00000560173 PCF11O94913 1555 aaKnown RBP15.11■□□□□ 0.01
LDLR-211ENST00000560173 CASKIN1Q8WXD9 1431 aa15.1■□□□□ 0.01
LDLR-211ENST00000560173 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.09■□□□□ 0.01
LDLR-211ENST00000560173 HNRNPUL2Q1KMD3 747 aaKnown RBP15.09■□□□□ 0.01
LDLR-211ENST00000560173 KCNH8Q96L42 1107 aa15.09■□□□□ 0.01
LDLR-211ENST00000560173 FYCO1Q9BQS8 1478 aa15.08■□□□□ 0
LDLR-211ENST00000560173 CFAP43Q8NDM7 1665 aa15.06■□□□□ 0
LDLR-211ENST00000560173 ATP1B4Q9UN42 357 aaPredicted RBP15.06■□□□□ 0
LDLR-211ENST00000560173 PLEKHD1A6NEE1 506 aa15.05■□□□□ -0
LDLR-211ENST00000560173 ABCA9Q8IUA7 1624 aa15.05■□□□□ -0
LDLR-211ENST00000560173 LRRIQ1Q96JM4 1722 aa15.04■□□□□ -0
LDLR-211ENST00000560173 MAGI3Q5TCQ9 1506 aa15.04■□□□□ -0
LDLR-211ENST00000560173 CD109Q6YHK3 1445 aa15.04■□□□□ -0
LDLR-211ENST00000560173 CCDC18Q5T9S5 1454 aa15.03■□□□□ -0
LDLR-211ENST00000560173 TEX14Q8IWB6 1497 aa15.03■□□□□ -0
LDLR-211ENST00000560173 CDK11AQ9UQ88 783 aaPredicted RBP14.99□□□□□ -0.01
LDLR-211ENST00000560173 TROQ12816 1431 aaPredicted RBP14.99□□□□□ -0.01
LDLR-211ENST00000560173 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.98□□□□□ -0.01
LDLR-211ENST00000560173 TTC37Q6PGP7 1564 aa14.98□□□□□ -0.01
LDLR-211ENST00000560173 COL17A1Q9UMD9 1497 aaPredicted RBP14.97□□□□□ -0.01
LDLR-211ENST00000560173 VPS8Q8N3P4 1428 aa14.96□□□□□ -0.01
LDLR-211ENST00000560173 KIF14Q15058 1648 aa14.95□□□□□ -0.02
LDLR-211ENST00000560173 NEO1Q92859 1461 aa14.92□□□□□ -0.02
LDLR-211ENST00000560173 PHLDB1Q86UU1 1377 aa14.91□□□□□ -0.02
LDLR-211ENST00000560173 ARAP3Q8WWN8 1544 aa14.9□□□□□ -0.02
LDLR-211ENST00000560173 FBXO41Q8TF61 875 aa14.89□□□□□ -0.03
LDLR-211ENST00000560173 PLCH2O75038 1416 aa14.89□□□□□ -0.03
LDLR-211ENST00000560173 FANCAO15360 1455 aa14.89□□□□□ -0.03
LDLR-211ENST00000560173 MYO5CQ9NQX4 1742 aa14.87□□□□□ -0.03
LDLR-211ENST00000560173 CFAP74Q9C0B2 1584 aa14.87□□□□□ -0.03
LDLR-211ENST00000560173 MTUS2Q5JR59 1369 aa14.86□□□□□ -0.03
LDLR-211ENST00000560173 EHBP1L1Q8N3D4 1523 aa14.86□□□□□ -0.03
LDLR-211ENST00000560173 TIAM1Q13009 1591 aa14.85□□□□□ -0.03
LDLR-211ENST00000560173 AKNAQ7Z591 1439 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms