RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 FBLN2P98095 1184 aa19.52■□□□□ 0.72
HERC1-205ENST00000559886 CLIP1P30622 1438 aa19.5■□□□□ 0.71
HERC1-205ENST00000559886 CEP170Q5SW79 1584 aa19.48■□□□□ 0.71
HERC1-205ENST00000559886 NUP160Q12769 1436 aa19.48■□□□□ 0.71
HERC1-205ENST00000559886 IQGAP2Q13576 1575 aa19.46■□□□□ 0.71
HERC1-205ENST00000559886 KIAA0586Q9BVV6 1533 aa19.45■□□□□ 0.7
HERC1-205ENST00000559886 RANGAP1P46060 587 aaPredicted RBP19.45■□□□□ 0.7
HERC1-205ENST00000559886 ARHGAP35Q9NRY4 1499 aa19.41■□□□□ 0.7
HERC1-205ENST00000559886 EFCAB5A4FU69 1503 aa19.39■□□□□ 0.69
HERC1-205ENST00000559886 UGGT2Q9NYU1 1516 aa19.37■□□□□ 0.69
HERC1-205ENST00000559886 SAMD9Q5K651 1589 aa19.36■□□□□ 0.69
HERC1-205ENST00000559886 ARAP1Q96P48 1450 aa19.35■□□□□ 0.69
HERC1-205ENST00000559886 CLASP1Q7Z460 1538 aa19.3■□□□□ 0.68
HERC1-205ENST00000559886 JPH4Q96JJ6 628 aa19.29■□□□□ 0.68
HERC1-205ENST00000559886 VPS8Q8N3P4 1428 aa19.29■□□□□ 0.68
HERC1-205ENST00000559886 DISP1Q96F81 1524 aa19.27■□□□□ 0.68
HERC1-205ENST00000559886 SHROOM2Q13796 1616 aa19.27■□□□□ 0.68
HERC1-205ENST00000559886 P3H3Q8IVL6 736 aa19.27■□□□□ 0.68
HERC1-205ENST00000559886 FHOD3Q2V2M9 1422 aa19.27■□□□□ 0.67
HERC1-205ENST00000559886 KIAA0556O60303 1618 aa19.26■□□□□ 0.67
HERC1-205ENST00000559886 OSCARQ8IYS5 282 aa19.22■□□□□ 0.67
HERC1-205ENST00000559886 CARMIL2Q6F5E8 1435 aa19.22■□□□□ 0.67
HERC1-205ENST00000559886 FMN1Q68DA7 1419 aa19.19■□□□□ 0.66
HERC1-205ENST00000559886 PRG4Q92954 1404 aaPredicted RBP19.19■□□□□ 0.66
HERC1-205ENST00000559886 PCF11O94913 1555 aaKnown RBP19.14■□□□□ 0.65
HERC1-205ENST00000559886 CASKIN1Q8WXD9 1431 aa19.12■□□□□ 0.65
HERC1-205ENST00000559886 ERCC6L2Q5T890 1561 aa19.12■□□□□ 0.65
HERC1-205ENST00000559886 FYCO1Q9BQS8 1478 aa19.11■□□□□ 0.65
HERC1-205ENST00000559886 APLP2Q06481 763 aa19.06■□□□□ 0.64
HERC1-205ENST00000559886 PTPRGP23470 1445 aa19.05■□□□□ 0.64
HERC1-205ENST00000559886 RAPGEF6Q8TEU7 1601 aa19.04■□□□□ 0.64
HERC1-205ENST00000559886 TTBK1Q5TCY1 1321 aaPredicted RBP19.04■□□□□ 0.64
HERC1-205ENST00000559886 MAP3K1Q13233 1512 aa19.04■□□□□ 0.64
HERC1-205ENST00000559886 LRRIQ1Q96JM4 1722 aa19.03■□□□□ 0.64
HERC1-205ENST00000559886 HECW1Q76N89 1606 aa19.03■□□□□ 0.64
HERC1-205ENST00000559886 ATP1B4Q9UN42 357 aaPredicted RBP19.02■□□□□ 0.64
HERC1-205ENST00000559886 CFAP43Q8NDM7 1665 aa19.01■□□□□ 0.63
HERC1-205ENST00000559886 TIAM1Q13009 1591 aa19.01■□□□□ 0.63
HERC1-205ENST00000559886 PLB1Q6P1J6 1458 aa19.01■□□□□ 0.63
HERC1-205ENST00000559886 ABCA8O94911 1581 aa19.01■□□□□ 0.63
HERC1-205ENST00000559886 PPARGC1BQ86YN6 1023 aaKnown RBP18.98■□□□□ 0.63
HERC1-205ENST00000559886 NUP153P49790 1475 aaKnown RBP18.97■□□□□ 0.63
HERC1-205ENST00000559886 CCDC18Q5T9S5 1454 aa18.97■□□□□ 0.63
HERC1-205ENST00000559886 EPRSP07814 1512 aaKnown RBP18.96■□□□□ 0.63
HERC1-205ENST00000559886 UACAQ9BZF9 1416 aa18.94■□□□□ 0.62
HERC1-205ENST00000559886 KANK4Q5T7N3 995 aaPredicted RBP18.94■□□□□ 0.62
HERC1-205ENST00000559886 ARHGEF11O15085 1522 aa18.92■□□□□ 0.62
HERC1-205ENST00000559886 LRRC9Q6ZRR7 1453 aa18.92■□□□□ 0.62
HERC1-205ENST00000559886 CDK13Q14004 1512 aaKnown RBP18.91■□□□□ 0.62
HERC1-205ENST00000559886 ABCC2Q92887 1545 aa18.9■□□□□ 0.62
HERC1-205ENST00000559886 UHRF1BP1LA0JNW5 1464 aa18.89■□□□□ 0.61
HERC1-205ENST00000559886 ARID3CA6NKF2 412 aa18.87■□□□□ 0.61
HERC1-205ENST00000559886 RIMBP3CA6NJZ7 1639 aa18.86■□□□□ 0.61
HERC1-205ENST00000559886 RIMBP3BA6NNM3 1639 aa18.86■□□□□ 0.61
HERC1-205ENST00000559886 RIMBP3Q9UFD9 1639 aa18.86■□□□□ 0.61
HERC1-205ENST00000559886 ATP10BO94823 1461 aa18.86■□□□□ 0.61
HERC1-205ENST00000559886 MAGI3Q5TCQ9 1506 aa18.85■□□□□ 0.61
HERC1-205ENST00000559886 MTUS2Q5JR59 1369 aa18.84■□□□□ 0.61
HERC1-205ENST00000559886 EHBP1L1Q8N3D4 1523 aa18.83■□□□□ 0.61
HERC1-205ENST00000559886 ADCY10Q96PN6 1610 aa18.83■□□□□ 0.61
HERC1-205ENST00000559886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.81■□□□□ 0.6
HERC1-205ENST00000559886 HNRNPUL2Q1KMD3 747 aaKnown RBP18.81■□□□□ 0.6
HERC1-205ENST00000559886 CDK11AQ9UQ88 783 aaPredicted RBP18.81■□□□□ 0.6
HERC1-205ENST00000559886 KDM5BQ9UGL1 1544 aa18.8■□□□□ 0.6
HERC1-205ENST00000559886 TRIM26Q12899 539 aaPredicted RBP18.8■□□□□ 0.6
HERC1-205ENST00000559886 SUPT6HQ7KZ85 1726 aaKnown RBP18.78■□□□□ 0.6
HERC1-205ENST00000559886 ZCCHC11Q5TAX3 1644 aaKnown RBP18.78■□□□□ 0.6
HERC1-205ENST00000559886 TROQ12816 1431 aaPredicted RBP18.76■□□□□ 0.59
HERC1-205ENST00000559886 PLEKHD1A6NEE1 506 aa18.74■□□□□ 0.59
HERC1-205ENST00000559886 NCOA2Q15596 1464 aa18.73■□□□□ 0.59
HERC1-205ENST00000559886 PHLDB1Q86UU1 1377 aa18.72■□□□□ 0.59
HERC1-205ENST00000559886 CYB5RLQ6IPT4 315 aa18.71■□□□□ 0.59
HERC1-205ENST00000559886 KIF14Q15058 1648 aa18.69■□□□□ 0.58
HERC1-205ENST00000559886 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
HERC1-205ENST00000559886 RRBP1Q9P2E9 1410 aaKnown RBP18.67■□□□□ 0.58
HERC1-205ENST00000559886 NPM1P06748 294 aaKnown RBP eCLIP18.65■□□□□ 0.58
HERC1-205ENST00000559886 MYOM3Q5VTT5 1437 aa18.64■□□□□ 0.58
HERC1-205ENST00000559886 ABCC10Q5T3U5 1492 aa18.62■□□□□ 0.57
HERC1-205ENST00000559886 CCNB3Q8WWL7 1395 aa18.62■□□□□ 0.57
HERC1-205ENST00000559886 WDR7Q9Y4E6 1490 aa18.62■□□□□ 0.57
HERC1-205ENST00000559886 FGD6Q6ZV73 1430 aa18.61■□□□□ 0.57
HERC1-205ENST00000559886 ASXL2Q76L83 1435 aa18.61■□□□□ 0.57
HERC1-205ENST00000559886 ITSN2Q9NZM3 1697 aa18.59■□□□□ 0.57
HERC1-205ENST00000559886 CDC42BPAQ5VT25 1732 aa18.59■□□□□ 0.57
HERC1-205ENST00000559886 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.58■□□□□ 0.56
HERC1-205ENST00000559886 GPATCH8Q9UKJ3 1502 aaKnown RBP18.58■□□□□ 0.56
HERC1-205ENST00000559886 MIA2Q96PC5 1412 aa18.58■□□□□ 0.56
HERC1-205ENST00000559886 KCNH8Q96L42 1107 aa18.57■□□□□ 0.56
HERC1-205ENST00000559886 MAPKBP1O60336 1514 aa18.56■□□□□ 0.56
HERC1-205ENST00000559886 TTC37Q6PGP7 1564 aa18.56■□□□□ 0.56
HERC1-205ENST00000559886 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.56■□□□□ 0.56
HERC1-205ENST00000559886 PTPN23Q9H3S7 1636 aa18.56■□□□□ 0.56
HERC1-205ENST00000559886 TCOF1Q13428 1488 aaKnown RBP18.53■□□□□ 0.56
HERC1-205ENST00000559886 MYO5CQ9NQX4 1742 aa18.53■□□□□ 0.56
HERC1-205ENST00000559886 DNAJC5Q9H3Z4 198 aa18.52■□□□□ 0.56
HERC1-205ENST00000559886 PREX2Q70Z35 1606 aa18.52■□□□□ 0.56
HERC1-205ENST00000559886 CDC42BPBQ9Y5S2 1711 aa18.52■□□□□ 0.56
HERC1-205ENST00000559886 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
HERC1-205ENST00000559886 ABCA9Q8IUA7 1624 aa18.51■□□□□ 0.55
HERC1-205ENST00000559886 CFDP1Q9UEE9 299 aaPredicted RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms